Iron in PDB 7vb7: Matrix Arm of Active State Ci From Dq-Nadh Dataset
Enzymatic activity of Matrix Arm of Active State Ci From Dq-Nadh Dataset
All present enzymatic activity of Matrix Arm of Active State Ci From Dq-Nadh Dataset:
7.1.1.2;
Other elements in 7vb7:
The structure of Matrix Arm of Active State Ci From Dq-Nadh Dataset also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
28;
Binding sites:
The binding sites of Iron atom in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
(pdb code 7vb7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the
Matrix Arm of Active State Ci From Dq-Nadh Dataset, PDB code: 7vb7:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 1 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_01.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:13.2
occ:1.00
|
FE1
|
A:SF4501
|
0.0
|
13.2
|
1.0
|
SG
|
A:CYS382
|
2.3
|
8.9
|
1.0
|
S2
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S4
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S3
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
FE3
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE2
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE4
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
CB
|
A:CYS382
|
3.5
|
8.9
|
1.0
|
CB
|
A:CYS385
|
3.7
|
10.7
|
1.0
|
N
|
A:CYS382
|
3.8
|
8.9
|
1.0
|
S1
|
A:SF4501
|
3.9
|
13.2
|
1.0
|
CA
|
A:CYS382
|
4.1
|
8.9
|
1.0
|
N
|
A:ILE424
|
4.3
|
10.1
|
1.0
|
CB
|
A:THR423
|
4.4
|
10.2
|
1.0
|
O
|
A:CYS382
|
4.4
|
8.9
|
1.0
|
SG
|
A:CYS385
|
4.5
|
10.7
|
1.0
|
CB
|
A:ILE424
|
4.5
|
10.1
|
1.0
|
N
|
A:CYS425
|
4.7
|
11.6
|
1.0
|
C
|
A:CYS382
|
4.7
|
8.9
|
1.0
|
SG
|
A:CYS379
|
4.8
|
11.3
|
1.0
|
CG1
|
A:ILE424
|
4.8
|
10.1
|
1.0
|
CB
|
A:GLN381
|
4.8
|
9.7
|
1.0
|
N
|
A:GLN381
|
4.8
|
9.7
|
1.0
|
SG
|
A:CYS425
|
4.8
|
11.6
|
1.0
|
C
|
A:GLN381
|
4.8
|
9.7
|
1.0
|
CG2
|
A:THR423
|
4.9
|
10.2
|
1.0
|
CD1
|
A:ILE424
|
4.9
|
10.1
|
1.0
|
CA
|
A:ILE424
|
4.9
|
10.1
|
1.0
|
|
Iron binding site 2 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 2 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_02.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:13.2
occ:1.00
|
FE2
|
A:SF4501
|
0.0
|
13.2
|
1.0
|
SG
|
A:CYS425
|
2.3
|
11.6
|
1.0
|
S4
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S3
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S1
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
FE4
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE1
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE3
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
CB
|
A:CYS425
|
3.6
|
11.6
|
1.0
|
S2
|
A:SF4501
|
3.9
|
13.2
|
1.0
|
N
|
A:CYS425
|
3.9
|
11.6
|
1.0
|
CB
|
A:LEU427
|
4.1
|
14.1
|
1.0
|
CA
|
A:CYS425
|
4.1
|
11.6
|
1.0
|
CG
|
A:PRO223
|
4.2
|
12.9
|
1.0
|
CD1
|
A:ILE205
|
4.3
|
15.6
|
1.0
|
C
|
A:CYS425
|
4.4
|
11.6
|
1.0
|
O
|
A:CYS425
|
4.4
|
11.6
|
1.0
|
CD
|
A:PRO223
|
4.6
|
12.9
|
1.0
|
N
|
A:LEU427
|
4.6
|
14.1
|
1.0
|
SG
|
A:CYS379
|
4.7
|
11.3
|
1.0
|
SG
|
A:CYS382
|
4.8
|
8.9
|
1.0
|
SG
|
A:CYS385
|
4.9
|
10.7
|
1.0
|
CA
|
A:LEU427
|
4.9
|
14.1
|
1.0
|
|
Iron binding site 3 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 3 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_03.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:13.2
occ:1.00
|
FE3
|
A:SF4501
|
0.0
|
13.2
|
1.0
|
SG
|
A:CYS385
|
2.3
|
10.7
|
1.0
|
S4
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S1
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S2
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
FE1
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE2
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE4
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
CB
|
A:CYS385
|
2.8
|
10.7
|
1.0
|
OG
|
A:SER378
|
3.7
|
13.2
|
1.0
|
S3
|
A:SF4501
|
3.9
|
13.2
|
1.0
|
CD2
|
A:LEU427
|
4.1
|
14.1
|
1.0
|
CB
|
A:LEU427
|
4.2
|
14.1
|
1.0
|
CA
|
A:CYS385
|
4.3
|
10.7
|
1.0
|
N
|
A:CYS379
|
4.4
|
11.3
|
1.0
|
CB
|
A:SER378
|
4.4
|
13.2
|
1.0
|
SG
|
A:CYS382
|
4.5
|
8.9
|
1.0
|
CA
|
A:SER378
|
4.6
|
13.2
|
1.0
|
CG
|
A:LEU427
|
4.6
|
14.1
|
1.0
|
SG
|
A:CYS425
|
4.7
|
11.6
|
1.0
|
SG
|
A:CYS379
|
4.8
|
11.3
|
1.0
|
N
|
A:GLY380
|
4.8
|
10.3
|
1.0
|
C
|
A:CYS385
|
4.8
|
10.7
|
1.0
|
CD1
|
A:LEU427
|
4.9
|
14.1
|
1.0
|
N
|
A:GLY428
|
4.9
|
14.9
|
1.0
|
C
|
A:SER378
|
5.0
|
13.2
|
1.0
|
|
Iron binding site 4 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 4 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_04.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:13.2
occ:1.00
|
FE4
|
A:SF4501
|
0.0
|
13.2
|
1.0
|
SG
|
A:CYS379
|
2.3
|
11.3
|
1.0
|
S1
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S2
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
S3
|
A:SF4501
|
2.3
|
13.2
|
1.0
|
FE2
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE1
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
FE3
|
A:SF4501
|
2.7
|
13.2
|
1.0
|
CB
|
A:CYS379
|
3.4
|
11.3
|
1.0
|
N
|
A:CYS379
|
3.8
|
11.3
|
1.0
|
N
|
A:GLN381
|
3.8
|
9.7
|
1.0
|
N
|
A:GLY380
|
3.9
|
10.3
|
1.0
|
S4
|
A:SF4501
|
3.9
|
13.2
|
1.0
|
CA
|
A:CYS379
|
4.0
|
11.3
|
1.0
|
CB
|
A:GLN381
|
4.0
|
9.7
|
1.0
|
C
|
A:CYS379
|
4.2
|
11.3
|
1.0
|
CD
|
A:PRO223
|
4.2
|
12.9
|
1.0
|
CA
|
A:GLN381
|
4.5
|
9.7
|
1.0
|
N
|
A:CYS382
|
4.6
|
8.9
|
1.0
|
C
|
A:GLY380
|
4.7
|
10.3
|
1.0
|
CG
|
A:PRO223
|
4.7
|
12.9
|
1.0
|
OE1
|
A:GLN381
|
4.8
|
9.7
|
1.0
|
SG
|
A:CYS425
|
4.8
|
11.6
|
1.0
|
OG
|
A:SER378
|
4.8
|
13.2
|
1.0
|
CA
|
A:GLY380
|
4.8
|
10.3
|
1.0
|
SG
|
A:CYS382
|
4.8
|
8.9
|
1.0
|
SG
|
A:CYS385
|
4.8
|
10.7
|
1.0
|
C
|
A:SER378
|
4.9
|
13.2
|
1.0
|
|
Iron binding site 5 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 5 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_05.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:10.0
occ:1.00
|
FE1
|
B:SF4301
|
0.0
|
10.0
|
1.0
|
SG
|
B:CYS113
|
2.3
|
8.6
|
1.0
|
S3
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S2
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S4
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
FE3
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE2
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE4
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
CB
|
B:CYS113
|
3.4
|
8.6
|
1.0
|
CA
|
B:CYS113
|
3.8
|
8.6
|
1.0
|
N
|
B:ALA115
|
3.8
|
7.7
|
1.0
|
S1
|
B:SF4301
|
3.9
|
10.0
|
1.0
|
N
|
B:ILE114
|
4.0
|
7.8
|
1.0
|
C
|
B:CYS113
|
4.3
|
8.6
|
1.0
|
CA
|
B:ALA115
|
4.3
|
7.7
|
1.0
|
CB
|
B:ALA166
|
4.4
|
8.2
|
1.0
|
CE2
|
B:TYR145
|
4.5
|
8.4
|
1.0
|
N
|
B:CYS116
|
4.5
|
7.2
|
1.0
|
SG
|
B:CYS119
|
4.8
|
6.4
|
1.0
|
SG
|
B:CYS162
|
4.8
|
6.6
|
1.0
|
C
|
B:ILE114
|
4.8
|
7.8
|
1.0
|
SG
|
B:CYS116
|
4.9
|
7.2
|
1.0
|
C
|
B:ALA115
|
5.0
|
7.7
|
1.0
|
|
Iron binding site 6 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 6 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_06.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:10.0
occ:1.00
|
FE2
|
B:SF4301
|
0.0
|
10.0
|
1.0
|
SG
|
B:CYS116
|
2.3
|
7.2
|
1.0
|
S4
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S3
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S1
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
FE4
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE3
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE1
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
N
|
B:CYS116
|
3.4
|
7.2
|
1.0
|
CB
|
B:CYS116
|
3.5
|
7.2
|
1.0
|
N
|
B:LYS117
|
3.5
|
7.2
|
1.0
|
CA
|
B:CYS116
|
3.8
|
7.2
|
1.0
|
S2
|
B:SF4301
|
3.9
|
10.0
|
1.0
|
C
|
B:CYS116
|
4.0
|
7.2
|
1.0
|
N
|
B:LEU118
|
4.1
|
6.4
|
1.0
|
CD
|
B:PRO163
|
4.3
|
7.1
|
1.0
|
CA
|
B:LYS117
|
4.4
|
7.2
|
1.0
|
C
|
B:ALA115
|
4.5
|
7.7
|
1.0
|
N
|
B:ALA115
|
4.5
|
7.7
|
1.0
|
SG
|
B:CYS162
|
4.7
|
6.6
|
1.0
|
CA
|
B:ALA115
|
4.7
|
7.7
|
1.0
|
SG
|
B:CYS119
|
4.7
|
6.4
|
1.0
|
C
|
B:LYS117
|
4.7
|
7.2
|
1.0
|
CD1
|
B:ILE114
|
4.8
|
7.8
|
1.0
|
SG
|
B:CYS113
|
4.8
|
8.6
|
1.0
|
N
|
B:CYS119
|
4.8
|
6.4
|
1.0
|
CB
|
B:LEU118
|
4.9
|
6.4
|
1.0
|
CG
|
B:PRO163
|
5.0
|
7.1
|
1.0
|
|
Iron binding site 7 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 7 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_07.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:10.0
occ:1.00
|
FE3
|
B:SF4301
|
0.0
|
10.0
|
1.0
|
SG
|
B:CYS119
|
2.3
|
6.4
|
1.0
|
S1
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S2
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S4
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
FE1
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE2
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE4
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
CB
|
B:CYS119
|
3.4
|
6.4
|
1.0
|
S3
|
B:SF4301
|
3.9
|
10.0
|
1.0
|
OH
|
B:TYR145
|
3.9
|
8.4
|
1.0
|
N
|
B:CYS119
|
3.9
|
6.4
|
1.0
|
CE2
|
B:TYR145
|
4.0
|
8.4
|
1.0
|
CA
|
B:CYS119
|
4.3
|
6.4
|
1.0
|
CD1
|
B:ILE130
|
4.4
|
8.7
|
1.0
|
CZ
|
B:TYR145
|
4.4
|
8.4
|
1.0
|
CG2
|
B:ILE167
|
4.4
|
7.4
|
1.0
|
N
|
B:LYS117
|
4.6
|
7.2
|
1.0
|
N
|
B:LEU118
|
4.6
|
6.4
|
1.0
|
SG
|
B:CYS116
|
4.7
|
7.2
|
1.0
|
SG
|
B:CYS113
|
4.7
|
8.6
|
1.0
|
SG
|
B:CYS162
|
4.8
|
6.6
|
1.0
|
CA
|
B:LYS117
|
4.8
|
7.2
|
1.0
|
C
|
B:LYS117
|
5.0
|
7.2
|
1.0
|
|
Iron binding site 8 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 8 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_08.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:10.0
occ:1.00
|
FE4
|
B:SF4301
|
0.0
|
10.0
|
1.0
|
SG
|
B:CYS162
|
2.3
|
6.6
|
1.0
|
S2
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S3
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
S1
|
B:SF4301
|
2.3
|
10.0
|
1.0
|
FE2
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE3
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
FE1
|
B:SF4301
|
2.7
|
10.0
|
1.0
|
CB
|
B:CYS162
|
3.3
|
6.6
|
1.0
|
CB
|
B:ALA166
|
3.8
|
8.2
|
1.0
|
S4
|
B:SF4301
|
3.9
|
10.0
|
1.0
|
CA
|
B:CYS162
|
3.9
|
6.6
|
1.0
|
CD
|
B:PRO163
|
4.2
|
7.1
|
1.0
|
CG2
|
B:ILE167
|
4.2
|
7.4
|
1.0
|
N
|
B:ILE167
|
4.5
|
7.4
|
1.0
|
CG2
|
B:VAL164
|
4.5
|
7.8
|
1.0
|
SG
|
B:CYS116
|
4.6
|
7.2
|
1.0
|
N
|
B:ALA166
|
4.7
|
8.2
|
1.0
|
C
|
B:CYS162
|
4.7
|
6.6
|
1.0
|
N
|
B:PRO163
|
4.7
|
7.1
|
1.0
|
CA
|
B:ALA166
|
4.7
|
8.2
|
1.0
|
SG
|
B:CYS119
|
4.7
|
6.4
|
1.0
|
SG
|
B:CYS113
|
4.8
|
8.6
|
1.0
|
CB
|
B:ILE167
|
5.0
|
7.4
|
1.0
|
|
Iron binding site 9 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 9 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_09.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe302
b:6.8
occ:1.00
|
FE1
|
B:SF4302
|
0.0
|
6.8
|
1.0
|
SG
|
B:CYS123
|
2.3
|
5.6
|
1.0
|
S2
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
S3
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
S4
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
FE2
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
FE3
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
FE4
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
CB
|
B:CYS123
|
3.3
|
5.6
|
1.0
|
CA
|
B:CYS123
|
3.8
|
5.6
|
1.0
|
S1
|
B:SF4302
|
3.9
|
6.8
|
1.0
|
CD
|
B:PRO124
|
4.0
|
5.6
|
1.0
|
CD1
|
B:ILE128
|
4.3
|
7.2
|
1.0
|
CB
|
B:ALA127
|
4.4
|
6.3
|
1.0
|
C
|
B:CYS123
|
4.5
|
5.6
|
1.0
|
N
|
B:PRO124
|
4.5
|
5.6
|
1.0
|
CG1
|
B:ILE128
|
4.5
|
7.2
|
1.0
|
SG
|
B:CYS155
|
4.7
|
5.6
|
1.0
|
SG
|
B:CYS152
|
4.8
|
5.4
|
1.0
|
SG
|
B:CYS158
|
4.8
|
5.6
|
1.0
|
N
|
B:ALA125
|
4.9
|
5.5
|
1.0
|
N
|
B:ALA127
|
5.0
|
6.3
|
1.0
|
CB
|
B:CYS158
|
5.0
|
5.6
|
1.0
|
|
Iron binding site 10 out
of 28 in 7vb7
Go back to
Iron Binding Sites List in 7vb7
Iron binding site 10 out
of 28 in the Matrix Arm of Active State Ci From Dq-Nadh Dataset
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_10.jpg) Mono view
![](/pictures/FE/pdb/vb/7vb7-FE-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Matrix Arm of Active State Ci From Dq-Nadh Dataset within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe302
b:6.8
occ:1.00
|
FE2
|
B:SF4302
|
0.0
|
6.8
|
1.0
|
SG
|
B:CYS152
|
2.3
|
5.4
|
1.0
|
S1
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
S3
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
S4
|
B:SF4302
|
2.3
|
6.8
|
1.0
|
FE1
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
FE3
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
FE4
|
B:SF4302
|
2.7
|
6.8
|
1.0
|
CB
|
B:CYS152
|
3.5
|
5.4
|
1.0
|
NE2
|
B:HIS101
|
3.6
|
7.9
|
1.0
|
N
|
B:TYR154
|
3.7
|
5.5
|
1.0
|
S2
|
B:SF4302
|
3.9
|
6.8
|
1.0
|
CA
|
B:CYS152
|
3.9
|
5.4
|
1.0
|
CE1
|
B:HIS101
|
3.9
|
7.9
|
1.0
|
N
|
B:ILE153
|
4.0
|
5.3
|
1.0
|
CA
|
B:TYR154
|
4.2
|
5.5
|
1.0
|
C
|
B:CYS152
|
4.4
|
5.4
|
1.0
|
N
|
B:CYS155
|
4.5
|
5.6
|
1.0
|
C
|
B:ILE153
|
4.7
|
5.3
|
1.0
|
SG
|
B:CYS123
|
4.7
|
5.6
|
1.0
|
SG
|
B:CYS158
|
4.8
|
5.6
|
1.0
|
CD2
|
B:HIS101
|
4.8
|
7.9
|
1.0
|
SG
|
B:CYS155
|
4.9
|
5.6
|
1.0
|
CA
|
B:ILE153
|
4.9
|
5.3
|
1.0
|
C
|
B:TYR154
|
4.9
|
5.5
|
1.0
|
CB
|
B:ALA127
|
5.0
|
6.3
|
1.0
|
|
Reference:
J.Gu,
T.Liu,
R.Guo,
L.Zhang,
M.Yang.
The Coupling Mechanism of Mammalian Mitochondrial Complex I. Nat.Struct.Mol.Biol. V. 29 172 2022.
ISSN: ESSN 1545-9985
PubMed: 35145322
DOI: 10.1038/S41594-022-00722-W
Page generated: Fri Aug 9 05:26:15 2024
|