Iron in PDB 7vd9: 2.29 A Structure of the Human Catalase

All present enzymatic activity of 2.29 A Structure of the Human Catalase:
1.11.1.6;

The binding sites of Iron atom in the 2.29 A Structure of the Human Catalase (pdb code 7vd9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the 2.29 A Structure of the Human Catalase, PDB code: 7vd9:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2.29 A Structure of the Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:7.8 occ:1.00 FE A:HEM601 0.0 7.8 1.0 OH A:TYR358 1.9 4.4 1.0 NB A:HEM601 2.0 4.5 1.0 NC A:HEM601 2.1 4.1 1.0 NA A:HEM601 2.1 3.9 1.0 ND A:HEM601 2.1 3.8 1.0 CZ A:TYR358 3.0 3.8 1.0 C1C A:HEM601 3.0 4.0 1.0 C4B A:HEM601 3.0 4.8 1.0 C4C A:HEM601 3.1 4.2 1.0 C1B A:HEM601 3.1 4.3 1.0 C1A A:HEM601 3.1 3.4 1.0 C1D A:HEM601 3.1 3.5 1.0 C4D A:HEM601 3.1 3.2 1.0 C4A A:HEM601 3.1 3.6 1.0 CHC A:HEM601 3.4 5.1 1.0 CHA A:HEM601 3.4 3.0 1.0 CHD A:HEM601 3.4 3.7 1.0 CHB A:HEM601 3.5 4.2 1.0 CE1 A:TYR358 3.7 4.3 1.0 CE2 A:TYR358 3.9 3.5 1.0 NE A:ARG354 4.2 4.8 1.0 C2C A:HEM601 4.2 4.6 1.0 C3C A:HEM601 4.3 4.6 1.0 C3B A:HEM601 4.3 5.6 1.0 C2B A:HEM601 4.3 4.7 1.0 C2A A:HEM601 4.3 3.9 1.0 C3A A:HEM601 4.3 4.0 1.0 C2D A:HEM601 4.3 3.5 1.0 C3D A:HEM601 4.3 3.1 1.0 CZ A:PHE161 4.4 5.1 1.0 NH2 A:ARG354 4.5 4.8 1.0 CZ A:ARG354 4.7 5.0 1.0 CG2 A:VAL74 4.7 3.4 1.0 CE1 A:PHE161 4.9 5.4 1.0 CE2 A:PHE161 4.9 5.8 1.0 CD2 A:HIS75 5.0 4.1 1.0

Iron binding site 2 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2.29 A Structure of the Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1201 b:7.2 occ:1.00 FE B:HEM1201 0.0 7.2 1.0 OH B:TYR358 1.9 4.1 1.0 NB B:HEM1201 2.0 4.7 1.0 NC B:HEM1201 2.1 3.8 1.0 ND B:HEM1201 2.1 3.7 1.0 NA B:HEM1201 2.1 3.8 1.0 CZ B:TYR358 3.0 3.8 1.0 C1C B:HEM1201 3.0 4.3 1.0 C4B B:HEM1201 3.0 4.8 1.0 C4C B:HEM1201 3.1 4.3 1.0 C1B B:HEM1201 3.1 4.3 1.0 C1A B:HEM1201 3.1 3.5 1.0 C1D B:HEM1201 3.1 3.3 1.0 C4D B:HEM1201 3.1 3.2 1.0 C4A B:HEM1201 3.1 3.8 1.0 CHC B:HEM1201 3.4 5.2 1.0 CHA B:HEM1201 3.4 2.9 1.0 CHD B:HEM1201 3.4 3.9 1.0 CHB B:HEM1201 3.5 4.5 1.0 CE1 B:TYR358 3.8 4.2 1.0 CE2 B:TYR358 3.9 3.4 1.0 NE B:ARG354 4.2 4.6 1.0 C2C B:HEM1201 4.2 4.6 1.0 C3C B:HEM1201 4.3 4.8 1.0 C3B B:HEM1201 4.3 5.3 1.0 C2B B:HEM1201 4.3 4.5 1.0 C2D B:HEM1201 4.3 3.7 1.0 C2A B:HEM1201 4.3 4.0 1.0 C3A B:HEM1201 4.3 4.1 1.0 C3D B:HEM1201 4.3 3.2 1.0 CZ B:PHE161 4.4 5.3 1.0 NH2 B:ARG354 4.5 4.7 1.0 CZ B:ARG354 4.7 4.7 1.0 CG2 B:VAL74 4.7 3.5 1.0 CE1 B:PHE161 5.0 5.3 1.0

Iron binding site 3 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of 2.29 A Structure of the Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:6.6 occ:1.00 FE C:HEM601 0.0 6.6 1.0 OH C:TYR358 1.9 4.7 1.0 NB C:HEM601 2.0 4.5 1.0 NC C:HEM601 2.1 4.1 1.0 ND C:HEM601 2.1 3.7 1.0 NA C:HEM601 2.1 3.9 1.0 CZ C:TYR358 3.0 4.0 1.0 C1C C:HEM601 3.0 4.3 1.0 C4B C:HEM601 3.0 4.9 1.0 C4C C:HEM601 3.1 4.3 1.0 C1B C:HEM601 3.1 4.5 1.0 C1A C:HEM601 3.1 3.3 1.0 C1D C:HEM601 3.1 3.5 1.0 C4D C:HEM601 3.1 3.2 1.0 C4A C:HEM601 3.1 3.8 1.0 CHC C:HEM601 3.4 5.2 1.0 CHA C:HEM601 3.4 3.0 1.0 CHD C:HEM601 3.4 3.8 1.0 CHB C:HEM601 3.5 4.6 1.0 CE1 C:TYR358 3.7 4.2 1.0 CE2 C:TYR358 3.9 3.6 1.0 NE C:ARG354 4.2 5.6 1.0 C2C C:HEM601 4.2 4.8 1.0 C3C C:HEM601 4.3 4.8 1.0 C3B C:HEM601 4.3 5.8 1.0 C2B C:HEM601 4.3 4.6 1.0 C3A C:HEM601 4.3 3.9 1.0 C2A C:HEM601 4.3 3.8 1.0 C2D C:HEM601 4.3 3.6 1.0 C3D C:HEM601 4.3 3.1 1.0 CZ C:PHE161 4.4 5.1 1.0 NH2 C:ARG354 4.5 5.0 1.0 CG2 C:VAL74 4.7 3.3 1.0 CZ C:ARG354 4.7 5.0 1.0 CE1 C:PHE161 4.9 5.3 1.0 CE2 C:PHE161 5.0 5.6 1.0 CD2 C:HIS75 5.0 4.2 1.0 NE2 C:HIS75 5.0 4.8 1.0

Iron binding site 4 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of 2.29 A Structure of the Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:6.9 occ:1.00 FE D:HEM601 0.0 6.9 1.0 OH D:TYR358 1.9 4.6 1.0 NB D:HEM601 2.0 4.5 1.0 NC D:HEM601 2.1 4.2 1.0 ND D:HEM601 2.1 3.8 1.0 NA D:HEM601 2.1 3.6 1.0 CZ D:TYR358 3.0 3.9 1.0 C1C D:HEM601 3.0 4.5 1.0 C4B D:HEM601 3.0 4.9 1.0 C4C D:HEM601 3.1 4.2 1.0 C1B D:HEM601 3.1 4.4 1.0 C1A D:HEM601 3.1 3.3 1.0 C1D D:HEM601 3.1 3.2 1.0 C4D D:HEM601 3.1 3.2 1.0 C4A D:HEM601 3.1 3.9 1.0 CHC D:HEM601 3.4 5.5 1.0 CHA D:HEM601 3.4 2.8 1.0 CHD D:HEM601 3.4 3.4 1.0 CHB D:HEM601 3.5 4.6 1.0 CE1 D:TYR358 3.7 4.5 1.0 CE2 D:TYR358 3.9 3.6 1.0 NE D:ARG354 4.2 4.9 1.0 C2C D:HEM601 4.2 4.7 1.0 C3C D:HEM601 4.3 4.7 1.0 C3B D:HEM601 4.3 5.8 1.0 C2B D:HEM601 4.3 4.7 1.0 C3A D:HEM601 4.3 4.2 1.0 C2A D:HEM601 4.3 3.9 1.0 C2D D:HEM601 4.3 3.3 1.0 C3D D:HEM601 4.3 3.0 1.0 CZ D:PHE161 4.4 5.3 1.0 NH2 D:ARG354 4.4 4.8 1.0 CZ D:ARG354 4.7 5.1 1.0 CG2 D:VAL74 4.7 3.5 1.0 CE1 D:PHE161 4.9 5.6 1.0 CE2 D:PHE161 5.0 5.6 1.0 CD2 D:HIS75 5.0 4.1 1.0

H.Fan, B.Wang, Y.Zhang, Y.Zhu, B.Song, H.Xu, Y.Zhai, M.Qiao, F.Sun. A Cryo-Electron Microscopy Support Film Formed By 2D Crystals of Hydrophobin Hfbi. Nat Commun V. 12 7257 2021.
ISSN: ESSN 2041-1723
PubMed: 34907237
DOI: 10.1038/S41467-021-27596-8