Iron in PDB 7vdn: High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form

The structure of High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form, PDB code: 7vdn was solved by N.Shibayama, A.Sato-Tomita, N.Ishimoto, S.Y.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.02 / 0.93
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.403, 30.702, 63.804, 90, 105.57, 90
R / Rfree (%)	18.7 / 21.1

The binding sites of Iron atom in the High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form (pdb code 7vdn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form, PDB code: 7vdn:

Iron binding site 1 out of 1 in the High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution Crystal Structure of Sperm Whale Myoglobin in the Carbonmonoxy Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:9.8 occ:1.00 FE A:HEM204 0.0 9.8 1.0 C A:CMO205 1.7 11.1 1.0 NB A:HEM204 2.0 9.2 1.0 ND A:HEM204 2.0 9.4 1.0 NC A:HEM204 2.0 9.3 1.0 NA A:HEM204 2.0 9.8 1.0 NE2 A:HIS93 2.1 9.7 1.0 O A:CMO205 2.9 13.7 1.0 C4A A:HEM204 3.0 10.2 1.0 C1D A:HEM204 3.0 9.9 1.0 C4C A:HEM204 3.0 9.7 1.0 C4B A:HEM204 3.1 9.1 1.0 CE1 A:HIS93 3.1 11.3 1.0 C1B A:HEM204 3.1 9.5 1.0 C1A A:HEM204 3.1 10.6 1.0 C4D A:HEM204 3.1 10.2 1.0 C1C A:HEM204 3.1 9.0 1.0 CD2 A:HIS93 3.1 9.7 1.0 CHB A:HEM204 3.4 9.8 1.0 CHC A:HEM204 3.5 9.8 1.0 CHD A:HEM204 3.5 10.0 1.0 CHA A:HEM204 3.5 11.0 1.0 ND1 A:HIS93 4.2 11.4 1.0 C3B A:HEM204 4.2 9.7 1.0 C3C A:HEM204 4.3 9.6 1.0 C3A A:HEM204 4.3 10.8 1.0 CG A:HIS93 4.3 10.1 1.0 C2B A:HEM204 4.3 9.7 1.0 C2D A:HEM204 4.3 11.0 1.0 C2A A:HEM204 4.3 11.1 1.0 C2C A:HEM204 4.3 9.5 1.0 C3D A:HEM204 4.3 11.2 1.0 NE2 A:HIS64 4.6 15.1 1.0 CG2 A:VAL68 4.9 13.3 1.0

A.Sato-Tomita, T.Matsushita, A.K.R.Ang, K.Kimura, R.Marumi, N.Happo, S.Y.Park, N.Shibayama, Y.C.Sasaki, K.Hayashi. Atomic Imaging of Protein Metal Sites Using X-Ray Fluorescence Holography To Be Published.