Iron in PDB 7vrj: Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum

The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum also contains other interesting chemical elements:

Magnesium	(Mg)	37 atoms
Calcium	(Ca)	6 atoms

The binding sites of Iron atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum (pdb code 7vrj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum, PDB code: 7vrj:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:41.5 occ:1.00 FE C:HEC501 0.0 41.5 1.0 ND C:HEC501 1.9 41.5 1.0 NA C:HEC501 2.0 41.5 1.0 NC C:HEC501 2.1 41.5 1.0 NB C:HEC501 2.1 41.5 1.0 NE2 C:HIS111 2.2 44.2 1.0 SD C:MET94 2.6 41.2 1.0 C4D C:HEC501 2.9 41.5 1.0 C1D C:HEC501 2.9 41.5 1.0 C1A C:HEC501 3.0 41.5 1.0 C4C C:HEC501 3.0 41.5 1.0 C4A C:HEC501 3.0 41.5 1.0 CD2 C:HIS111 3.0 44.2 1.0 C1B C:HEC501 3.1 41.5 1.0 C4B C:HEC501 3.1 41.5 1.0 C1C C:HEC501 3.1 41.5 1.0 CHA C:HEC501 3.3 41.5 1.0 CE1 C:HIS111 3.4 44.2 1.0 CHD C:HEC501 3.4 41.5 1.0 CHB C:HEC501 3.5 41.5 1.0 CHC C:HEC501 3.5 41.5 1.0 CE C:MET94 3.6 41.2 1.0 CG C:MET94 3.9 41.2 1.0 C3D C:HEC501 4.1 41.5 1.0 C2D C:HEC501 4.1 41.5 1.0 C2A C:HEC501 4.2 41.5 1.0 C3A C:HEC501 4.2 41.5 1.0 C3C C:HEC501 4.3 41.5 1.0 CG C:HIS111 4.3 44.2 1.0 C2C C:HEC501 4.3 41.5 1.0 C2B C:HEC501 4.3 41.5 1.0 C3B C:HEC501 4.3 41.5 1.0 ND1 C:HIS111 4.4 44.2 1.0 CB C:MET94 4.6 41.2 1.0

Iron binding site 2 out of 5 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe502 b:24.4 occ:1.00 FE C:HEC502 0.0 24.4 1.0 ND C:HEC502 1.9 24.4 1.0 NA C:HEC502 2.0 24.4 1.0 NC C:HEC502 2.1 24.4 1.0 NB C:HEC502 2.1 24.4 1.0 NE2 C:HIS158 2.4 22.4 1.0 SD C:MET130 2.5 26.5 1.0 C4D C:HEC502 2.9 24.4 1.0 C1D C:HEC502 2.9 24.4 1.0 C1A C:HEC502 3.0 24.4 1.0 C4C C:HEC502 3.0 24.4 1.0 C4A C:HEC502 3.0 24.4 1.0 C1B C:HEC502 3.1 24.4 1.0 C4B C:HEC502 3.1 24.4 1.0 C1C C:HEC502 3.1 24.4 1.0 CE1 C:HIS158 3.2 22.4 1.0 CHA C:HEC502 3.3 24.4 1.0 CHD C:HEC502 3.4 24.4 1.0 CHB C:HEC502 3.5 24.4 1.0 CD2 C:HIS158 3.5 22.4 1.0 CHC C:HEC502 3.5 24.4 1.0 CE C:MET130 3.6 26.5 1.0 CG C:MET130 3.6 26.5 1.0 C3D C:HEC502 4.1 24.4 1.0 C2D C:HEC502 4.1 24.4 1.0 C2A C:HEC502 4.2 24.4 1.0 C3A C:HEC502 4.2 24.4 1.0 C3C C:HEC502 4.3 24.4 1.0 C2C C:HEC502 4.3 24.4 1.0 C2B C:HEC502 4.3 24.4 1.0 C3B C:HEC502 4.3 24.4 1.0 ND1 C:HIS158 4.4 22.4 1.0 CB C:MET130 4.4 26.5 1.0 CG C:HIS158 4.6 22.4 1.0

Iron binding site 3 out of 5 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe503 b:8.8 occ:1.00 FE C:HEC503 0.0 8.8 1.0 ND C:HEC503 1.9 8.8 1.0 NA C:HEC503 2.0 8.8 1.0 NC C:HEC503 2.1 8.8 1.0 NB C:HEC503 2.1 8.8 1.0 NE2 C:HIS253 2.3 7.7 1.0 SD C:MET238 2.6 7.5 1.0 C4D C:HEC503 2.9 8.8 1.0 C1D C:HEC503 2.9 8.8 1.0 C1A C:HEC503 3.0 8.8 1.0 C4C C:HEC503 3.0 8.8 1.0 C4A C:HEC503 3.0 8.8 1.0 C1B C:HEC503 3.1 8.8 1.0 C4B C:HEC503 3.1 8.8 1.0 CD2 C:HIS253 3.1 7.7 1.0 C1C C:HEC503 3.1 8.8 1.0 CHA C:HEC503 3.3 8.8 1.0 CE1 C:HIS253 3.4 7.7 1.0 CHD C:HEC503 3.4 8.8 1.0 CHB C:HEC503 3.5 8.8 1.0 CG C:MET238 3.5 7.5 1.0 CHC C:HEC503 3.5 8.8 1.0 CE C:MET238 3.5 7.5 1.0 C3D C:HEC503 4.1 8.8 1.0 C2D C:HEC503 4.1 8.8 1.0 C2A C:HEC503 4.2 8.8 1.0 C3A C:HEC503 4.2 8.8 1.0 C3C C:HEC503 4.3 8.8 1.0 C2C C:HEC503 4.3 8.8 1.0 CG C:HIS253 4.3 7.7 1.0 C2B C:HEC503 4.3 8.8 1.0 C3B C:HEC503 4.3 8.8 1.0 ND1 C:HIS253 4.4 7.7 1.0 CB C:MET238 4.5 7.5 1.0

Iron binding site 4 out of 5 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe504 b:15.6 occ:1.00 FE C:HEC504 0.0 15.6 1.0 ND C:HEC504 1.9 15.6 1.0 NA C:HEC504 2.0 15.6 1.0 NC C:HEC504 2.1 15.6 1.0 NB C:HEC504 2.1 15.6 1.0 NE2 C:HIS313 2.3 13.9 1.0 NE2 C:HIS144 2.4 15.7 1.0 C4D C:HEC504 2.9 15.6 1.0 C1D C:HEC504 2.9 15.6 1.0 C1A C:HEC504 3.0 15.6 1.0 C4C C:HEC504 3.0 15.6 1.0 C4A C:HEC504 3.1 15.6 1.0 C4B C:HEC504 3.1 15.6 1.0 C1B C:HEC504 3.1 15.6 1.0 C1C C:HEC504 3.1 15.6 1.0 CE1 C:HIS144 3.2 15.7 1.0 CE1 C:HIS313 3.3 13.9 1.0 CHA C:HEC504 3.3 15.6 1.0 CD2 C:HIS313 3.3 13.9 1.0 CHD C:HEC504 3.4 15.6 1.0 CD2 C:HIS144 3.5 15.7 1.0 CHB C:HEC504 3.5 15.6 1.0 CHC C:HEC504 3.5 15.6 1.0 C3D C:HEC504 4.1 15.6 1.0 C2D C:HEC504 4.1 15.6 1.0 C2A C:HEC504 4.2 15.6 1.0 C3A C:HEC504 4.2 15.6 1.0 C3C C:HEC504 4.3 15.6 1.0 C2C C:HEC504 4.3 15.6 1.0 C2B C:HEC504 4.3 15.6 1.0 C3B C:HEC504 4.3 15.6 1.0 ND1 C:HIS144 4.4 15.7 1.0 ND1 C:HIS313 4.4 13.9 1.0 CG C:HIS313 4.5 13.9 1.0 CG C:HIS144 4.5 15.7 1.0 CB C:ALA274 4.7 12.7 1.0

Iron binding site 5 out of 5 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe401 b:18.8 occ:1.00 OE2 M:GLU233 2.1 25.3 1.0 OE1 M:GLU233 2.2 25.3 1.0 NE2 L:HIS195 2.3 14.9 1.0 NE2 L:HIS235 2.4 15.8 1.0 NE2 M:HIS218 2.4 12.9 1.0 NE2 M:HIS265 2.4 16.6 1.0 CD M:GLU233 2.4 25.3 1.0 CE1 L:HIS195 3.1 14.9 1.0 CE1 M:HIS265 3.1 16.6 1.0 CE1 L:HIS235 3.1 15.8 1.0 CE1 M:HIS218 3.3 12.9 1.0 CD2 M:HIS218 3.4 12.9 1.0 CD2 L:HIS195 3.4 14.9 1.0 CD2 L:HIS235 3.5 15.8 1.0 CD2 M:HIS265 3.5 16.6 1.0 CG M:GLU233 3.9 25.3 1.0 ND1 L:HIS195 4.3 14.9 1.0 ND1 M:HIS265 4.3 16.6 1.0 ND1 L:HIS235 4.3 15.8 1.0 ND1 M:HIS218 4.4 12.9 1.0 CG L:HIS195 4.5 14.9 1.0 CG M:HIS218 4.5 12.9 1.0 CG M:HIS265 4.5 16.6 1.0 CG L:HIS235 4.5 15.8 1.0 CG1 M:ILE222 4.6 15.6 1.0 CG1 L:ILE199 4.8 19.8 1.0 CB M:GLU233 4.9 25.3 1.0 CD1 L:ILE199 4.9 19.8 1.0 CD1 M:ILE222 5.0 15.6 1.0

K.Tani, K.Kobayashi, N.Hosogi, X.C.Ji, S.Nagashima, K.V.P.Nagashima, A.Izumida, K.Inoue, Y.Tsukatani, R.Kanno, M.Hall, L.J.Yu, I.Ishikawa, Y.Okura, M.T.Madigan, A.Mizoguchi, B.M.Humbel, Y.Kimura, Z.Y.Wang-Otomo. A Ca 2+ -Binding Motif Underlies the Unusual Properties of Certain Photosynthetic Bacterial Core Light-Harvesting Complexes. J.Biol.Chem. V. 298 01967 2022.
ISSN: ESSN 1083-351X
PubMed: 35460693
DOI: 10.1016/J.JBC.2022.101967