Iron in PDB 7vt2: Azumapecten Farreri Ferritin

All present enzymatic activity of Azumapecten Farreri Ferritin:
1.16.3.1;

The structure of Azumapecten Farreri Ferritin, PDB code: 7vt2 was solved by Z.Guanghua, Z.Chenxi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.68 / 2.40
Space group	P 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	161.535, 169.579, 198.374, 90, 95.73, 90
R / Rfree (%)	19 / 23

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 95;

Binding sites:

The binding sites of Iron atom in the Azumapecten Farreri Ferritin (pdb code 7vt2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 95 binding sites of Iron where determined in the Azumapecten Farreri Ferritin, PDB code: 7vt2:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:52.3 occ:1.00 OE1 A:GLU24 2.2 27.7 1.0 O A:HOH321 2.4 34.1 1.0 OE2 A:GLU59 2.5 32.6 1.0 ND1 A:HIS62 2.5 31.5 1.0 CD A:GLU24 3.1 25.6 1.0 OE2 A:GLU24 3.2 26.0 1.0 CD A:GLU59 3.3 28.7 1.0 CE1 A:HIS62 3.4 30.1 1.0 CG A:HIS62 3.4 28.9 1.0 OE1 A:GLU59 3.5 32.0 1.0 CB A:HIS62 3.7 24.5 1.0 OE1 A:GLN138 3.9 33.8 1.0 CG1 A:VAL107 3.9 21.0 1.0 O A:HOH394 3.9 29.5 1.0 CG A:GLU24 4.5 24.8 1.0 FE A:FE202 4.5 75.3 1.0 NE2 A:HIS62 4.6 37.9 1.0 CD2 A:HIS62 4.6 28.3 1.0 CG A:GLU59 4.7 24.4 1.0 CD A:GLN138 4.9 28.0 1.0 CA A:GLU59 4.9 23.6 1.0 CB A:GLU24 4.9 20.9 1.0

Iron binding site 2 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:75.3 occ:1.00 OD2 A:ASP141 2.9 38.4 1.0 OE1 A:GLU104 2.9 35.9 1.0 OE1 A:GLU59 3.0 32.0 1.0 O A:HOH321 3.0 34.1 1.0 OE1 A:GLN138 3.2 33.8 1.0 OE2 A:GLU104 3.3 31.8 1.0 CD A:GLU104 3.4 33.4 1.0 CG A:ASP141 3.7 33.4 1.0 NZ A:LYS55 4.0 37.8 1.0 CB A:ASP141 4.0 26.3 1.0 CE1 A:HIS62 4.2 30.1 1.0 CD A:GLU59 4.2 28.7 1.0 CD A:GLN138 4.2 28.0 1.0 OE2 A:GLU137 4.3 51.5 1.0 NE2 A:GLN138 4.5 24.2 1.0 FE A:FE201 4.5 52.3 1.0 ND1 A:HIS62 4.7 31.5 1.0 CG A:GLU104 4.7 27.6 1.0 OE2 A:GLU58 4.7 42.5 1.0 OD1 A:ASP141 4.7 41.6 1.0 OE2 A:GLU59 4.7 32.6 1.0 O A:HOH394 4.9 29.5 1.0 CG A:GLU137 4.9 38.7 1.0

Iron binding site 3 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ S:Fe201 b:55.2 occ:1.00 OE1 S:GLU59 2.0 36.8 1.0 OE1 S:GLU24 2.1 32.4 1.0 O S:HOH311 2.1 43.3 1.0 ND1 S:HIS62 2.5 31.5 1.0 CD S:GLU59 2.9 36.3 1.0 OE2 S:GLU59 3.1 41.6 1.0 CD S:GLU24 3.2 33.8 1.0 CE1 S:HIS62 3.3 29.7 1.0 OE2 S:GLU24 3.5 27.7 1.0 NE2 S:GLN138 3.5 47.9 1.0 CG S:HIS62 3.6 31.8 1.0 CB S:HIS62 4.0 27.2 1.0 CG1 S:VAL107 4.0 30.9 1.0 CG S:GLU59 4.3 33.4 1.0 NE2 S:HIS62 4.5 29.3 1.0 CG S:GLU24 4.5 27.4 1.0 CA S:GLU59 4.5 33.8 1.0 CB S:GLU59 4.6 30.9 1.0 CD2 S:HIS62 4.6 31.4 1.0 CB S:GLU24 4.7 26.3 1.0 FE S:FE202 4.8 95.3 1.0 CD S:GLN138 4.8 39.9 1.0 OE1 S:GLU104 4.9 41.1 1.0 CB S:VAL107 4.9 32.5 1.0

Iron binding site 4 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ S:Fe202 b:95.3 occ:1.00 OD2 S:ASP141 2.5 53.3 1.0 OE2 S:GLU59 2.7 41.6 1.0 O S:HOH311 3.3 43.3 1.0 OE2 S:GLU104 3.4 45.9 1.0 OE2 S:GLU58 3.5 41.2 1.0 CG S:ASP141 3.7 47.3 1.0 OE1 S:GLU104 3.7 41.1 1.0 CD S:GLU59 3.9 36.3 1.0 CD S:GLU104 3.9 42.2 1.0 OE2 S:GLU137 4.2 53.3 1.0 CE1 S:HIS62 4.2 29.7 1.0 NZ S:LYS55 4.2 50.4 1.0 OD1 S:ASP141 4.5 47.6 1.0 CB S:ASP141 4.6 32.3 1.0 CG S:GLU59 4.7 33.4 1.0 OE1 S:GLU59 4.7 36.8 1.0 CD S:GLU58 4.8 36.9 1.0 FE S:FE201 4.8 55.2 1.0 CB S:GLU58 4.8 28.9 1.0 NE2 S:GLN138 4.9 47.9 1.0 CE2 S:TYR31 5.0 38.5 1.0 ND1 S:HIS62 5.0 31.5 1.0

Iron binding site 5 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe201 b:51.7 occ:1.00 OE2 I:GLU59 2.3 25.8 1.0 OE1 I:GLU24 2.4 20.9 1.0 ND1 I:HIS62 2.6 29.1 1.0 CD I:GLU59 3.1 32.1 1.0 OE1 I:GLU59 3.1 36.0 1.0 CD I:GLU24 3.3 29.6 1.0 CE1 I:HIS62 3.5 30.9 1.0 OE2 I:GLU24 3.5 28.6 1.0 CG I:HIS62 3.7 32.4 1.0 OE1 I:GLN138 3.8 42.0 1.0 CG1 I:VAL107 3.9 20.7 1.0 CB I:HIS62 3.9 26.6 1.0 FE I:FE202 4.1 84.2 1.0 CG I:GLU59 4.5 28.1 1.0 O I:HOH333 4.7 33.1 1.0 NE2 I:HIS62 4.7 33.4 1.0 CG I:GLU24 4.7 29.3 1.0 CA I:GLU59 4.8 28.1 1.0 CD I:GLN138 4.8 32.3 1.0 CD2 I:HIS62 4.8 36.8 1.0 OE1 I:GLU104 4.8 29.5 1.0 CB I:GLU59 4.9 26.8 1.0 CB I:VAL107 4.9 25.3 1.0

Iron binding site 6 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:84.2 occ:1.00 OE1 I:GLU104 2.9 29.5 1.0 OE1 I:GLN138 2.9 42.0 1.0 O I:HOH305 3.0 43.2 1.0 OE1 I:GLU59 3.1 36.0 1.0 OD2 I:ASP141 3.1 42.3 1.0 CD I:GLU104 3.4 34.1 1.0 OE2 I:GLU104 3.5 34.7 1.0 CG I:ASP141 3.9 43.0 1.0 CD I:GLN138 3.9 32.3 1.0 OE2 I:GLU137 3.9 46.4 1.0 CB I:ASP141 4.0 31.7 1.0 CE1 I:HIS62 4.0 30.9 1.0 FE I:FE201 4.1 51.7 1.0 NE2 I:GLN138 4.2 27.6 1.0 CD I:GLU59 4.3 32.1 1.0 NZ I:LYS55 4.4 45.2 1.0 ND1 I:HIS62 4.5 29.1 1.0 CG I:GLU104 4.6 29.0 1.0 CG I:GLU137 4.7 38.0 1.0 CD I:GLU137 4.8 47.6 1.0 OE2 I:GLU59 4.8 25.8 1.0 OD1 I:ASP141 5.0 47.0 1.0 OE2 I:GLU58 5.0 50.0 1.0

Iron binding site 7 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe201 b:50.3 occ:1.00 OE2 O:GLU59 2.2 38.2 1.0 O O:HOH383 2.3 32.3 1.0 ND1 O:HIS62 2.4 33.3 1.0 OE1 O:GLU24 2.4 30.0 1.0 CD O:GLU59 2.9 35.9 1.0 OE1 O:GLU59 3.0 40.6 1.0 CE1 O:HIS62 3.2 37.3 1.0 CD O:GLU24 3.4 31.5 1.0 CG O:HIS62 3.4 34.4 1.0 OE2 O:GLU24 3.6 32.9 1.0 CB O:HIS62 3.8 29.5 1.0 O O:HOH399 3.9 34.3 1.0 OE1 O:GLN138 4.0 40.4 1.0 FE O:FE202 4.1 75.8 1.0 CG1 O:VAL107 4.1 23.5 1.0 CG O:GLU59 4.3 29.5 1.0 NE2 O:HIS62 4.4 38.8 1.0 CD2 O:HIS62 4.5 33.5 1.0 CA O:GLU59 4.6 30.0 1.0 CG O:GLU24 4.7 26.8 1.0 CB O:GLU59 4.7 27.0 1.0 OE1 O:GLU104 4.9 34.1 1.0 CD O:GLN138 4.9 33.5 1.0

Iron binding site 8 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe202 b:75.8 occ:1.00 OE1 O:GLU104 2.6 34.1 1.0 OE1 O:GLU59 2.8 40.6 1.0 OD2 O:ASP141 2.8 38.9 1.0 OE2 O:GLU104 3.0 31.5 1.0 CD O:GLU104 3.1 33.3 1.0 OE1 O:GLN138 3.3 40.4 1.0 CG O:ASP141 3.8 42.0 1.0 CD O:GLU59 4.0 35.9 1.0 OE1 O:GLU137 4.0 49.7 1.0 NZ O:LYS55 4.0 45.6 1.0 FE O:FE201 4.1 50.3 1.0 CE1 O:HIS62 4.1 37.3 1.0 CB O:ASP141 4.2 30.9 1.0 CD O:GLN138 4.3 33.5 1.0 CG O:GLU104 4.4 30.6 1.0 NE2 O:GLN138 4.5 30.9 1.0 OE2 O:GLU59 4.6 38.2 1.0 ND1 O:HIS62 4.6 33.3 1.0 OD1 O:ASP141 4.8 44.6 1.0 OE2 O:GLU58 4.9 36.8 1.0

Iron binding site 9 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ V:Fe201 b:58.2 occ:1.00 OE2 V:GLU59 2.2 34.0 1.0 OE1 V:GLU24 2.4 35.0 1.0 ND1 V:HIS62 2.5 41.7 1.0 O V:HOH341 2.5 30.6 1.0 CD V:GLU59 3.0 36.3 1.0 OE1 V:GLU59 3.2 40.7 1.0 CD V:GLU24 3.3 34.8 1.0 CE1 V:HIS62 3.4 40.5 1.0 OE2 V:GLU24 3.4 32.8 1.0 CG V:HIS62 3.6 34.9 1.0 OE1 V:GLN138 3.7 44.2 1.0 CB V:HIS62 3.9 33.1 1.0 CG1 V:VAL107 4.0 24.9 1.0 FE V:FE202 4.3 90.0 1.0 CG V:GLU59 4.4 30.2 1.0 NE2 V:HIS62 4.6 40.8 1.0 O V:HOH353 4.6 32.8 1.0 CD2 V:HIS62 4.7 34.9 1.0 CG V:GLU24 4.7 31.4 1.0 CA V:GLU59 4.7 31.4 1.0 CD V:GLN138 4.8 33.0 1.0 CB V:GLU59 4.8 26.1 1.0 OE1 V:GLU104 4.9 36.4 1.0

Iron binding site 10 out of 95 in the Azumapecten Farreri Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Azumapecten Farreri Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ V:Fe202 b:90.0 occ:1.00 OD1 V:ASP141 2.6 58.2 1.0 OE1 V:GLU59 2.6 40.7 1.0 OE2 V:GLU104 3.1 38.8 1.0 OE1 V:GLU104 3.5 36.4 1.0 CD V:GLU104 3.6 34.4 1.0 CD V:GLU59 3.8 36.3 1.0 CG V:ASP141 3.8 46.1 1.0 NZ V:LYS55 3.9 45.2 1.0 CE1 V:HIS62 4.0 40.5 1.0 OE2 V:GLU58 4.0 47.5 1.0 OE2 V:GLU137 4.1 56.5 1.0 OE1 V:GLN138 4.2 44.2 1.0 FE V:FE201 4.3 58.2 1.0 OE2 V:GLU59 4.5 34.0 1.0 CB V:ASP141 4.5 29.5 1.0 ND1 V:HIS62 4.5 41.7 1.0 OD2 V:ASP141 4.8 47.3 1.0 CG V:GLU59 4.8 30.2 1.0 CG V:GLU104 4.9 32.6 1.0

Z.Guanghua, Z.Chenxi. Structure of Azumapecten Farreri Ferritin at 2.4 Angstroms Resolution To Be Published.