Atomistry » Iron » PDB 7vp8-7w1p » 7vuw
Atomistry »
  Iron »
    PDB 7vp8-7w1p »
      7vuw »

Iron in PDB 7vuw: Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K

Enzymatic activity of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K

All present enzymatic activity of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K:
7.1.1.9;

Protein crystallography data

The structure of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K, PDB code: 7vuw was solved by A.Shimada, T.Tsukihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.92 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 182.076, 204.481, 177.68, 90, 90, 90
R / Rfree (%) 15.4 / 17.5

Other elements in 7vuw:

The structure of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K also contains other interesting chemical elements:

Copper (Cu) 6 atoms
Zinc (Zn) 2 atoms
Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K (pdb code 7vuw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K, PDB code: 7vuw:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7vuw

Go back to Iron Binding Sites List in 7vuw
Iron binding site 1 out of 4 in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:19.8
occ:1.00
 FE A:HEA601 0.0 19.8 1.0
NE2 A:HIS61 2.0 19.1 1.0
NC A:HEA601 2.0 18.2 1.0
NB A:HEA601 2.0 20.1 1.0
NA A:HEA601 2.0 18.7 1.0
NE2 A:HIS378 2.0 18.1 1.0
ND A:HEA601 2.0 19.8 1.0
CE1 A:HIS378 2.9 19.6 1.0
CE1 A:HIS61 3.0 22.4 1.0
C4A A:HEA601 3.0 18.3 1.0
C4C A:HEA601 3.0 18.3 1.0
CD2 A:HIS61 3.0 20.6 1.0
C1B A:HEA601 3.0 18.7 1.0
C1C A:HEA601 3.0 19.4 1.0
C4B A:HEA601 3.0 18.6 1.0
C1D A:HEA601 3.1 18.8 1.0
C1A A:HEA601 3.1 20.2 1.0
CD2 A:HIS378 3.1 21.7 1.0
C4D A:HEA601 3.1 20.0 1.0
CHD A:HEA601 3.4 20.0 1.0
CHB A:HEA601 3.4 20.1 1.0
CHC A:HEA601 3.5 18.7 1.0
CHA A:HEA601 3.5 20.2 1.0
ND1 A:HIS61 4.1 20.0 1.0
ND1 A:HIS378 4.1 18.5 1.0
CG A:HIS61 4.1 18.0 1.0
CG A:HIS378 4.2 17.3 1.0
C3A A:HEA601 4.2 19.7 1.0
C2C A:HEA601 4.2 17.9 1.0
C2A A:HEA601 4.2 19.9 1.0
C3B A:HEA601 4.3 18.1 1.0
C3C A:HEA601 4.3 17.8 1.0
C2B A:HEA601 4.3 19.6 1.0
C2D A:HEA601 4.3 18.8 1.0
C3D A:HEA601 4.3 18.9 1.0
CE2 A:PHE377 4.8 19.5 1.0

Iron binding site 2 out of 4 in 7vuw

Go back to Iron Binding Sites List in 7vuw
Iron binding site 2 out of 4 in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:19.1
occ:1.00
 FE A:HEA602 0.0 19.1 1.0
NC A:HEA602 2.0 18.1 1.0
NB A:HEA602 2.0 18.3 1.0
NA A:HEA602 2.0 18.5 1.0
ND A:HEA602 2.0 17.9 1.0
NE2 A:HIS376 2.1 17.7 1.0
C A:CYN606 2.1 14.4 1.0
C4A A:HEA602 3.0 18.5 1.0
C4C A:HEA602 3.0 16.9 1.0
C4B A:HEA602 3.0 18.9 1.0
CE1 A:HIS376 3.1 20.8 1.0
C4D A:HEA602 3.1 18.0 1.0
C1B A:HEA602 3.1 18.6 1.0
C1C A:HEA602 3.1 18.9 1.0
C1A A:HEA602 3.1 17.5 1.0
C1D A:HEA602 3.1 17.7 1.0
CD2 A:HIS376 3.1 18.0 1.0
N A:CYN606 3.2 25.3 1.0
CHC A:HEA602 3.4 18.6 1.0
CHD A:HEA602 3.5 18.6 1.0
CHB A:HEA602 3.5 18.5 1.0
CHA A:HEA602 3.5 21.0 1.0
ND1 A:HIS376 4.2 19.0 1.0
C3A A:HEA602 4.2 19.6 1.0
CG A:HIS376 4.2 17.9 1.0
C2A A:HEA602 4.3 18.4 1.0
C2C A:HEA602 4.3 17.2 1.0
C3B A:HEA602 4.3 18.4 1.0
C2D A:HEA602 4.3 19.1 1.0
C3D A:HEA602 4.3 17.2 1.0
C3C A:HEA602 4.3 16.9 1.0
C2B A:HEA602 4.3 18.0 1.0
CU A:CU603 4.9 19.7 1.0

Iron binding site 3 out of 4 in 7vuw

Go back to Iron Binding Sites List in 7vuw
Iron binding site 3 out of 4 in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe601

b:23.5
occ:1.00
 FE N:HEA601 0.0 23.5 1.0
NE2 N:HIS61 2.0 21.8 1.0
NC N:HEA601 2.0 23.2 1.0
ND N:HEA601 2.0 23.0 1.0
NB N:HEA601 2.0 23.6 1.0
NE2 N:HIS378 2.0 24.1 1.0
NA N:HEA601 2.0 25.3 1.0
CE1 N:HIS378 3.0 25.5 1.0
CE1 N:HIS61 3.0 25.9 1.0
CD2 N:HIS61 3.0 25.3 1.0
C1D N:HEA601 3.0 23.5 1.0
C4C N:HEA601 3.0 24.5 1.0
C4B N:HEA601 3.0 23.3 1.0
C1C N:HEA601 3.0 24.1 1.0
C1B N:HEA601 3.0 25.4 1.0
C4A N:HEA601 3.0 24.1 1.0
C4D N:HEA601 3.1 24.3 1.0
CD2 N:HIS378 3.1 23.7 1.0
C1A N:HEA601 3.1 23.2 1.0
CHB N:HEA601 3.4 25.9 1.0
CHD N:HEA601 3.4 23.8 1.0
CHC N:HEA601 3.4 22.1 1.0
CHA N:HEA601 3.5 28.3 1.0
ND1 N:HIS61 4.1 25.5 1.0
ND1 N:HIS378 4.1 24.2 1.0
CG N:HIS61 4.1 26.3 1.0
CG N:HIS378 4.2 22.5 1.0
C2D N:HEA601 4.2 22.1 1.0
C2C N:HEA601 4.2 22.4 1.0
C3A N:HEA601 4.2 23.6 1.0
C3C N:HEA601 4.2 25.8 1.0
C2B N:HEA601 4.3 24.1 1.0
C3B N:HEA601 4.3 21.8 1.0
C2A N:HEA601 4.3 22.8 1.0
C3D N:HEA601 4.3 23.3 1.0
CE2 N:PHE377 4.8 22.4 1.0

Iron binding site 4 out of 4 in 7vuw

Go back to Iron Binding Sites List in 7vuw
Iron binding site 4 out of 4 in the Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bovine Heart Cytochrome C Oxidase in the Cyanide-Bound Fully Oxidized State at 50 K within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe602

b:21.8
occ:1.00
 FE N:HEA602 0.0 21.8 1.0
NA N:HEA602 2.0 20.8 1.0
NC N:HEA602 2.0 21.1 1.0
ND N:HEA602 2.0 20.5 1.0
NB N:HEA602 2.0 20.0 1.0
NE2 N:HIS376 2.1 21.7 1.0
C N:CYN606 2.1 18.0 1.0
C4A N:HEA602 3.0 19.6 1.0
C4D N:HEA602 3.0 22.2 1.0
C1A N:HEA602 3.0 21.5 1.0
C4C N:HEA602 3.0 20.3 1.0
C1D N:HEA602 3.1 21.2 1.0
C4B N:HEA602 3.1 20.1 1.0
C1B N:HEA602 3.1 22.4 1.0
CE1 N:HIS376 3.1 24.4 1.0
C1C N:HEA602 3.1 20.4 1.0
CD2 N:HIS376 3.1 20.9 1.0
N N:CYN606 3.2 29.1 1.0
CHC N:HEA602 3.4 21.6 1.0
CHA N:HEA602 3.5 21.5 1.0
CHB N:HEA602 3.5 21.0 1.0
CHD N:HEA602 3.5 22.0 1.0
ND1 N:HIS376 4.2 23.1 1.0
C3A N:HEA602 4.2 20.7 1.0
C2D N:HEA602 4.2 22.2 1.0
C2A N:HEA602 4.2 21.2 1.0
C3D N:HEA602 4.2 21.4 1.0
CG N:HIS376 4.3 21.5 1.0
C3B N:HEA602 4.3 20.4 1.0
C2C N:HEA602 4.3 20.8 1.0
C3C N:HEA602 4.3 20.8 1.0
C2B N:HEA602 4.3 20.6 1.0
CU N:CU603 4.9 21.7 1.0

Reference:

A.Shimada, T.Tsukihara. Bovine Cytochrome C Oxidese in Cn-Bound Fully Oxidized State at 50 K To Be Published.
Page generated: Fri Aug 9 06:02:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy