Iron in PDB 7vvs: PLL9 Induced Tmftn Nanocage
Enzymatic activity of PLL9 Induced Tmftn Nanocage
All present enzymatic activity of PLL9 Induced Tmftn Nanocage:
1.16.3.2;
Protein crystallography data
The structure of PLL9 Induced Tmftn Nanocage, PDB code: 7vvs
was solved by
G.Zhao,
X.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.69 /
2.20
|
Space group
|
H 3 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
176.193,
176.193,
357.508,
90,
90,
120
|
R / Rfree (%)
|
18 /
22.7
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the PLL9 Induced Tmftn Nanocage
(pdb code 7vvs). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
PLL9 Induced Tmftn Nanocage, PDB code: 7vvs:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 1 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:28.9
occ:0.94
|
OE1
|
H:GLU52
|
2.0
|
27.0
|
1.0
|
ND1
|
H:HIS55
|
2.2
|
27.4
|
1.0
|
OE1
|
H:GLU19
|
2.2
|
28.4
|
1.0
|
O
|
H:HOH311
|
2.2
|
27.4
|
1.0
|
FE
|
H:FE202
|
2.8
|
52.6
|
0.6
|
CE1
|
H:HIS55
|
3.0
|
31.7
|
1.0
|
HE1
|
H:HIS55
|
3.1
|
38.0
|
1.0
|
CD
|
H:GLU19
|
3.1
|
30.4
|
1.0
|
CD
|
H:GLU52
|
3.1
|
26.4
|
1.0
|
CG
|
H:HIS55
|
3.3
|
29.9
|
1.0
|
OE2
|
H:GLU19
|
3.4
|
31.2
|
1.0
|
HB2
|
H:HIS55
|
3.5
|
27.6
|
1.0
|
HG11
|
H:VAL99
|
3.5
|
32.7
|
1.0
|
HB3
|
H:HIS55
|
3.6
|
27.6
|
1.0
|
OE2
|
H:GLU52
|
3.6
|
32.7
|
1.0
|
CB
|
H:HIS55
|
3.7
|
23.0
|
1.0
|
HA
|
H:GLU52
|
3.7
|
33.2
|
1.0
|
OE1
|
H:GLN129
|
4.0
|
25.7
|
1.0
|
NE2
|
H:HIS55
|
4.2
|
28.2
|
1.0
|
HB3
|
H:GLU52
|
4.3
|
30.7
|
1.0
|
CD2
|
H:HIS55
|
4.3
|
27.0
|
1.0
|
HB3
|
H:GLU19
|
4.4
|
25.3
|
1.0
|
CG
|
H:GLU52
|
4.4
|
28.7
|
1.0
|
CG1
|
H:VAL99
|
4.4
|
27.2
|
1.0
|
HA
|
H:GLU19
|
4.5
|
26.5
|
1.0
|
CG
|
H:GLU19
|
4.5
|
24.3
|
1.0
|
HG
|
H:SER22
|
4.5
|
34.9
|
1.0
|
CA
|
H:GLU52
|
4.6
|
27.7
|
1.0
|
CB
|
H:GLU52
|
4.6
|
25.6
|
1.0
|
HG12
|
H:VAL99
|
4.6
|
32.7
|
1.0
|
HG13
|
H:VAL99
|
4.7
|
32.7
|
1.0
|
OE2
|
H:GLU96
|
4.8
|
48.4
|
1.0
|
HB2
|
H:SER22
|
4.8
|
22.0
|
1.0
|
HG3
|
H:GLU19
|
4.8
|
29.1
|
1.0
|
CB
|
H:GLU19
|
4.9
|
21.1
|
1.0
|
OE1
|
H:GLU96
|
4.9
|
35.3
|
1.0
|
HG3
|
H:GLU52
|
4.9
|
34.5
|
1.0
|
HD1
|
H:PHE125
|
4.9
|
39.9
|
1.0
|
HG21
|
H:VAL99
|
4.9
|
31.9
|
1.0
|
HE2
|
H:HIS55
|
4.9
|
33.8
|
1.0
|
HE1
|
H:PHE125
|
5.0
|
41.2
|
1.0
|
|
Iron binding site 2 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 2 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe202
b:52.6
occ:0.57
|
OE2
|
H:GLU52
|
2.4
|
32.7
|
1.0
|
OE2
|
H:GLU96
|
2.4
|
48.4
|
1.0
|
OE1
|
H:GLU96
|
2.6
|
35.3
|
1.0
|
FE
|
H:FE201
|
2.8
|
28.9
|
0.9
|
CD
|
H:GLU96
|
2.8
|
44.7
|
1.0
|
OE1
|
H:GLU52
|
2.8
|
27.0
|
1.0
|
CD
|
H:GLU52
|
2.9
|
26.4
|
1.0
|
OE1
|
H:GLU132
|
3.2
|
48.0
|
1.0
|
HE1
|
H:HIS55
|
3.2
|
38.0
|
1.0
|
OE1
|
H:GLN129
|
3.4
|
25.7
|
1.0
|
HG3
|
H:GLU132
|
3.5
|
53.0
|
1.0
|
CD
|
H:GLU132
|
3.6
|
37.0
|
1.0
|
HE21
|
H:GLN48
|
3.8
|
44.2
|
1.0
|
CE1
|
H:HIS55
|
3.8
|
31.7
|
1.0
|
HE22
|
H:GLN129
|
3.8
|
31.5
|
1.0
|
HG11
|
H:VAL99
|
3.9
|
32.7
|
1.0
|
ND1
|
H:HIS55
|
3.9
|
27.4
|
1.0
|
CG
|
H:GLU132
|
4.0
|
44.1
|
1.0
|
O
|
H:HOH311
|
4.0
|
27.4
|
1.0
|
HH
|
H:TYR26
|
4.1
|
53.0
|
1.0
|
HB3
|
H:GLU132
|
4.1
|
36.3
|
1.0
|
HE2
|
H:TYR26
|
4.1
|
32.7
|
1.0
|
HE22
|
H:GLN48
|
4.2
|
44.2
|
1.0
|
CG
|
H:GLU96
|
4.3
|
34.3
|
1.0
|
NE2
|
H:GLN48
|
4.3
|
36.8
|
1.0
|
OE2
|
H:GLU132
|
4.3
|
47.3
|
1.0
|
CD
|
H:GLN129
|
4.3
|
25.4
|
1.0
|
HG3
|
H:GLU96
|
4.4
|
41.2
|
1.0
|
NE2
|
H:GLN129
|
4.4
|
26.3
|
1.0
|
CG
|
H:GLU52
|
4.4
|
28.7
|
1.0
|
HG21
|
H:VAL99
|
4.5
|
31.9
|
1.0
|
CB
|
H:GLU132
|
4.5
|
30.3
|
1.0
|
HB2
|
H:GLU132
|
4.6
|
36.3
|
1.0
|
HG2
|
H:GLU96
|
4.7
|
41.2
|
1.0
|
OE1
|
H:GLU19
|
4.7
|
28.4
|
1.0
|
HG3
|
H:GLU52
|
4.7
|
34.5
|
1.0
|
HA
|
H:GLU96
|
4.8
|
34.6
|
1.0
|
HG2
|
H:GLU52
|
4.8
|
34.5
|
1.0
|
CG1
|
H:VAL99
|
4.8
|
27.2
|
1.0
|
OH
|
H:TYR26
|
4.8
|
44.2
|
1.0
|
HB3
|
H:SER22
|
4.8
|
22.0
|
1.0
|
HG2
|
H:GLU132
|
4.9
|
53.0
|
1.0
|
HB
|
H:VAL99
|
4.9
|
32.8
|
1.0
|
HG12
|
H:VAL99
|
4.9
|
32.7
|
1.0
|
CE2
|
H:TYR26
|
4.9
|
27.3
|
1.0
|
HG
|
H:SER22
|
5.0
|
34.9
|
1.0
|
HA
|
H:GLU52
|
5.0
|
33.2
|
1.0
|
|
Iron binding site 3 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 3 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:35.4
occ:1.00
|
OE1
|
A:GLU19
|
2.1
|
30.4
|
1.0
|
OE1
|
A:GLU52
|
2.1
|
34.0
|
1.0
|
ND1
|
A:HIS55
|
2.2
|
31.1
|
1.0
|
O
|
A:HOH311
|
2.3
|
30.8
|
1.0
|
FE
|
A:FE202
|
2.8
|
51.7
|
0.4
|
CD
|
A:GLU19
|
3.1
|
32.2
|
1.0
|
CE1
|
A:HIS55
|
3.1
|
34.5
|
1.0
|
CD
|
A:GLU52
|
3.2
|
29.0
|
1.0
|
HE1
|
A:HIS55
|
3.2
|
41.4
|
1.0
|
OE2
|
A:GLU19
|
3.3
|
33.1
|
1.0
|
CG
|
A:HIS55
|
3.3
|
29.5
|
1.0
|
HB2
|
A:HIS55
|
3.4
|
29.5
|
1.0
|
OE2
|
A:GLU52
|
3.5
|
31.7
|
1.0
|
HB3
|
A:HIS55
|
3.6
|
29.5
|
1.0
|
HG11
|
A:VAL99
|
3.6
|
37.9
|
1.0
|
CB
|
A:HIS55
|
3.7
|
24.6
|
1.0
|
HA
|
A:GLU52
|
3.7
|
32.0
|
1.0
|
O
|
A:HOH301
|
3.9
|
41.5
|
1.0
|
OE1
|
A:GLN129
|
4.1
|
31.3
|
1.0
|
O
|
A:HOH306
|
4.2
|
41.9
|
1.0
|
NE2
|
A:HIS55
|
4.3
|
32.5
|
1.0
|
CD2
|
A:HIS55
|
4.4
|
30.6
|
1.0
|
HB3
|
A:GLU19
|
4.4
|
28.2
|
1.0
|
CG
|
A:GLU19
|
4.5
|
30.1
|
1.0
|
HB3
|
A:GLU52
|
4.5
|
29.1
|
1.0
|
CG
|
A:GLU52
|
4.5
|
25.3
|
1.0
|
CG1
|
A:VAL99
|
4.5
|
31.6
|
1.0
|
HA
|
A:GLU19
|
4.5
|
31.4
|
1.0
|
CA
|
A:GLU52
|
4.6
|
26.7
|
1.0
|
OE1
|
A:GLU132
|
4.6
|
51.0
|
1.0
|
HG12
|
A:VAL99
|
4.7
|
37.9
|
1.0
|
CB
|
A:GLU52
|
4.8
|
24.2
|
1.0
|
HG3
|
A:GLU19
|
4.8
|
36.1
|
1.0
|
HD1
|
A:PHE125
|
4.8
|
37.8
|
1.0
|
HG13
|
A:VAL99
|
4.8
|
37.9
|
1.0
|
HB2
|
A:SER22
|
4.8
|
28.7
|
1.0
|
CB
|
A:GLU19
|
4.9
|
23.5
|
1.0
|
HG3
|
A:GLU52
|
5.0
|
30.4
|
1.0
|
OE2
|
A:GLU132
|
5.0
|
54.1
|
1.0
|
|
Iron binding site 4 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 4 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:51.7
occ:0.40
|
OE2
|
A:GLU52
|
2.3
|
31.7
|
1.0
|
OE2
|
A:GLU132
|
2.3
|
54.1
|
1.0
|
O
|
A:HOH301
|
2.4
|
41.5
|
1.0
|
OE1
|
A:GLU96
|
2.7
|
39.2
|
1.0
|
FE
|
A:FE201
|
2.8
|
35.4
|
1.0
|
CD
|
A:GLU132
|
2.9
|
44.5
|
1.0
|
OE1
|
A:GLU132
|
3.0
|
51.0
|
1.0
|
CD
|
A:GLU52
|
3.1
|
29.0
|
1.0
|
OE1
|
A:GLU52
|
3.1
|
34.0
|
1.0
|
HE1
|
A:HIS55
|
3.1
|
41.4
|
1.0
|
OE2
|
A:GLU96
|
3.3
|
48.0
|
1.0
|
OE1
|
A:GLN129
|
3.3
|
31.3
|
1.0
|
CD
|
A:GLU96
|
3.4
|
43.8
|
1.0
|
CE1
|
A:HIS55
|
3.7
|
34.5
|
1.0
|
HE21
|
A:GLN48
|
3.8
|
39.1
|
1.0
|
HE22
|
A:GLN129
|
3.8
|
33.5
|
1.0
|
ND1
|
A:HIS55
|
3.9
|
31.1
|
1.0
|
O
|
A:HOH311
|
4.1
|
30.8
|
1.0
|
HG11
|
A:VAL99
|
4.1
|
37.9
|
1.0
|
CG
|
A:GLU132
|
4.1
|
51.0
|
1.0
|
HE22
|
A:GLN48
|
4.1
|
39.1
|
1.0
|
HB3
|
A:GLU132
|
4.2
|
44.2
|
1.0
|
CD
|
A:GLN129
|
4.2
|
33.1
|
1.0
|
NE2
|
A:GLN48
|
4.3
|
32.6
|
1.0
|
HG3
|
A:GLU132
|
4.3
|
61.2
|
1.0
|
HE2
|
A:TYR26
|
4.3
|
36.9
|
1.0
|
NE2
|
A:GLN129
|
4.4
|
27.9
|
1.0
|
HB2
|
A:GLU132
|
4.4
|
44.2
|
1.0
|
CB
|
A:GLU132
|
4.5
|
36.9
|
1.0
|
HH
|
A:TYR26
|
4.5
|
47.6
|
1.0
|
CG
|
A:GLU52
|
4.6
|
25.3
|
1.0
|
O
|
A:HOH306
|
4.7
|
41.9
|
1.0
|
HG21
|
A:VAL99
|
4.8
|
36.8
|
1.0
|
CG
|
A:GLU96
|
4.8
|
29.6
|
1.0
|
HG2
|
A:GLU52
|
4.8
|
30.4
|
1.0
|
OE1
|
A:GLU19
|
4.8
|
30.4
|
1.0
|
HG2
|
A:GLU132
|
4.9
|
61.2
|
1.0
|
HG3
|
A:GLU52
|
4.9
|
30.4
|
1.0
|
CG1
|
A:VAL99
|
4.9
|
31.6
|
1.0
|
HG3
|
A:GLU96
|
4.9
|
35.5
|
1.0
|
HG3
|
A:GLU128
|
4.9
|
45.5
|
1.0
|
HG12
|
A:VAL99
|
5.0
|
37.9
|
1.0
|
HA
|
A:GLU52
|
5.0
|
32.0
|
1.0
|
|
Iron binding site 5 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 5 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:35.0
occ:0.91
|
OE1
|
B:GLU19
|
2.1
|
29.8
|
1.0
|
OE1
|
B:GLU52
|
2.1
|
36.8
|
1.0
|
O
|
B:HOH309
|
2.2
|
31.6
|
1.0
|
ND1
|
B:HIS55
|
2.3
|
37.0
|
1.0
|
FE
|
B:FE202
|
2.6
|
53.4
|
0.5
|
CD
|
B:GLU52
|
3.0
|
36.4
|
1.0
|
CD
|
B:GLU19
|
3.0
|
33.5
|
1.0
|
CE1
|
B:HIS55
|
3.1
|
34.0
|
1.0
|
HE1
|
B:HIS55
|
3.2
|
40.7
|
1.0
|
OE2
|
B:GLU52
|
3.3
|
32.6
|
1.0
|
CG
|
B:HIS55
|
3.3
|
37.0
|
1.0
|
OE2
|
B:GLU19
|
3.4
|
29.8
|
1.0
|
HB3
|
B:HIS55
|
3.5
|
38.0
|
1.0
|
HB2
|
B:HIS55
|
3.5
|
38.0
|
1.0
|
HG11
|
B:VAL99
|
3.6
|
36.0
|
1.0
|
CB
|
B:HIS55
|
3.7
|
31.7
|
1.0
|
HA
|
B:GLU52
|
3.7
|
40.9
|
1.0
|
OE1
|
B:GLN129
|
4.0
|
35.7
|
1.0
|
HB3
|
B:GLU19
|
4.3
|
42.3
|
1.0
|
NE2
|
B:HIS55
|
4.3
|
39.6
|
1.0
|
HB3
|
B:GLU52
|
4.3
|
38.0
|
1.0
|
CG
|
B:GLU52
|
4.3
|
29.6
|
1.0
|
CG
|
B:GLU19
|
4.4
|
28.4
|
1.0
|
CD2
|
B:HIS55
|
4.4
|
37.3
|
1.0
|
CG1
|
B:VAL99
|
4.5
|
30.0
|
1.0
|
CA
|
B:GLU52
|
4.5
|
34.1
|
1.0
|
HA
|
B:GLU19
|
4.6
|
37.0
|
1.0
|
CB
|
B:GLU52
|
4.6
|
31.7
|
1.0
|
HG12
|
B:VAL99
|
4.7
|
36.0
|
1.0
|
OE1
|
B:GLU132
|
4.7
|
49.5
|
1.0
|
HG21
|
B:VAL99
|
4.8
|
31.2
|
1.0
|
HG3
|
B:GLU19
|
4.8
|
34.1
|
1.0
|
CB
|
B:GLU19
|
4.8
|
35.2
|
1.0
|
HG3
|
B:GLU52
|
4.8
|
35.5
|
1.0
|
OE2
|
B:GLU96
|
4.8
|
48.0
|
1.0
|
HB2
|
B:SER22
|
4.8
|
33.3
|
1.0
|
OE1
|
B:GLU96
|
4.9
|
40.9
|
1.0
|
HD1
|
B:PHE125
|
4.9
|
40.7
|
1.0
|
HG2
|
B:GLU52
|
4.9
|
35.5
|
1.0
|
HG13
|
B:VAL99
|
4.9
|
36.0
|
1.0
|
|
Iron binding site 6 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 6 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:53.4
occ:0.47
|
OE2
|
B:GLU52
|
2.4
|
32.6
|
1.0
|
OE1
|
B:GLU132
|
2.5
|
49.5
|
1.0
|
FE
|
B:FE201
|
2.6
|
35.0
|
0.9
|
OE1
|
B:GLU96
|
2.7
|
40.9
|
1.0
|
OE2
|
B:GLU96
|
2.9
|
48.0
|
1.0
|
HE1
|
B:HIS55
|
3.1
|
40.7
|
1.0
|
CD
|
B:GLU96
|
3.1
|
45.7
|
1.0
|
OE1
|
B:GLN129
|
3.1
|
35.7
|
1.0
|
CD
|
B:GLU52
|
3.1
|
36.4
|
1.0
|
OE1
|
B:GLU52
|
3.2
|
36.8
|
1.0
|
CD
|
B:GLU132
|
3.3
|
45.0
|
1.0
|
O
|
B:HOH309
|
3.6
|
31.6
|
1.0
|
CE1
|
B:HIS55
|
3.6
|
34.0
|
1.0
|
HE22
|
B:GLN129
|
3.6
|
41.0
|
1.0
|
ND1
|
B:HIS55
|
3.7
|
37.0
|
1.0
|
OE2
|
B:GLU132
|
3.8
|
55.2
|
1.0
|
HE21
|
B:GLN48
|
3.8
|
43.8
|
1.0
|
CD
|
B:GLN129
|
4.0
|
36.1
|
1.0
|
HG11
|
B:VAL99
|
4.1
|
36.0
|
1.0
|
HE22
|
B:GLN48
|
4.1
|
43.8
|
1.0
|
NE2
|
B:GLN129
|
4.2
|
34.1
|
1.0
|
HB2
|
B:GLU132
|
4.3
|
52.1
|
1.0
|
NE2
|
B:GLN48
|
4.3
|
36.5
|
1.0
|
HB3
|
B:GLU132
|
4.3
|
52.1
|
1.0
|
CG
|
B:GLU132
|
4.4
|
49.3
|
1.0
|
HE2
|
B:TYR26
|
4.5
|
32.0
|
1.0
|
OE1
|
B:GLU19
|
4.5
|
29.8
|
1.0
|
HH
|
B:TYR26
|
4.5
|
39.0
|
1.0
|
CG
|
B:GLU96
|
4.5
|
32.9
|
1.0
|
CB
|
B:GLU132
|
4.6
|
43.5
|
1.0
|
CG
|
B:GLU52
|
4.6
|
29.6
|
1.0
|
HG21
|
B:VAL99
|
4.6
|
31.2
|
1.0
|
HG3
|
B:GLU96
|
4.7
|
39.5
|
1.0
|
HG3
|
B:GLU132
|
4.7
|
59.2
|
1.0
|
HG12
|
B:VAL99
|
4.7
|
36.0
|
1.0
|
CG1
|
B:VAL99
|
4.8
|
30.0
|
1.0
|
HG2
|
B:GLU52
|
4.8
|
35.5
|
1.0
|
HG3
|
B:GLU52
|
4.9
|
35.5
|
1.0
|
NE2
|
B:HIS55
|
4.9
|
39.6
|
1.0
|
HB
|
B:VAL99
|
4.9
|
34.9
|
1.0
|
HA
|
B:GLN129
|
5.0
|
39.6
|
1.0
|
HA
|
B:GLU52
|
5.0
|
40.9
|
1.0
|
|
Iron binding site 7 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 7 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:35.6
occ:1.00
|
ND1
|
C:HIS55
|
2.1
|
33.6
|
1.0
|
OE1
|
C:GLU52
|
2.2
|
31.0
|
1.0
|
O
|
C:HOH318
|
2.3
|
32.2
|
1.0
|
OE1
|
C:GLU19
|
2.3
|
34.1
|
1.0
|
FE
|
C:FE202
|
2.7
|
49.6
|
0.5
|
CE1
|
C:HIS55
|
2.9
|
35.2
|
1.0
|
HE1
|
C:HIS55
|
3.0
|
42.3
|
1.0
|
CD
|
C:GLU52
|
3.1
|
35.2
|
1.0
|
O
|
C:HOH301
|
3.2
|
52.2
|
1.0
|
CD
|
C:GLU19
|
3.2
|
35.1
|
1.0
|
CG
|
C:HIS55
|
3.3
|
33.6
|
1.0
|
OE2
|
C:GLU52
|
3.4
|
35.4
|
1.0
|
OE2
|
C:GLU19
|
3.4
|
37.0
|
1.0
|
HB3
|
C:HIS55
|
3.5
|
31.1
|
1.0
|
HB2
|
C:HIS55
|
3.6
|
31.1
|
1.0
|
HG11
|
C:VAL99
|
3.6
|
42.0
|
1.0
|
HA
|
C:GLU52
|
3.6
|
38.3
|
1.0
|
CB
|
C:HIS55
|
3.7
|
25.9
|
1.0
|
OE1
|
C:GLN129
|
4.1
|
33.1
|
1.0
|
NE2
|
C:HIS55
|
4.1
|
32.6
|
1.0
|
HB3
|
C:GLU52
|
4.3
|
35.9
|
1.0
|
CD2
|
C:HIS55
|
4.3
|
34.5
|
1.0
|
HA
|
C:GLU19
|
4.4
|
32.3
|
1.0
|
CG
|
C:GLU52
|
4.4
|
34.4
|
1.0
|
CG1
|
C:VAL99
|
4.5
|
35.0
|
1.0
|
CA
|
C:GLU52
|
4.5
|
31.9
|
1.0
|
HB3
|
C:GLU19
|
4.5
|
32.8
|
1.0
|
CG
|
C:GLU19
|
4.6
|
31.1
|
1.0
|
HG12
|
C:VAL99
|
4.6
|
42.0
|
1.0
|
CB
|
C:GLU52
|
4.6
|
29.9
|
1.0
|
OE1
|
C:GLU96
|
4.8
|
46.6
|
1.0
|
HB2
|
C:SER22
|
4.8
|
33.6
|
1.0
|
HG13
|
C:VAL99
|
4.9
|
42.0
|
1.0
|
HE2
|
C:HIS55
|
4.9
|
39.2
|
1.0
|
HB3
|
C:SER22
|
4.9
|
33.6
|
1.0
|
OE2
|
C:GLU96
|
4.9
|
48.9
|
1.0
|
HG3
|
C:GLU19
|
4.9
|
37.2
|
1.0
|
HG21
|
C:VAL99
|
4.9
|
42.9
|
1.0
|
HD1
|
C:PHE125
|
5.0
|
41.1
|
1.0
|
CB
|
C:GLU19
|
5.0
|
27.3
|
1.0
|
HG3
|
C:GLU52
|
5.0
|
41.3
|
1.0
|
|
Iron binding site 8 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 8 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:49.6
occ:0.51
|
OE2
|
C:GLU52
|
2.4
|
35.4
|
1.0
|
OE1
|
C:GLU96
|
2.4
|
46.6
|
1.0
|
O
|
C:HOH301
|
2.5
|
52.2
|
1.0
|
FE
|
C:FE201
|
2.7
|
35.6
|
1.0
|
OE2
|
C:GLU96
|
2.8
|
48.9
|
1.0
|
CD
|
C:GLU96
|
2.9
|
46.6
|
1.0
|
OE1
|
C:GLU132
|
3.0
|
43.6
|
1.0
|
HE1
|
C:HIS55
|
3.0
|
42.3
|
1.0
|
OE1
|
C:GLU52
|
3.1
|
31.0
|
1.0
|
CD
|
C:GLU52
|
3.1
|
35.2
|
1.0
|
OE1
|
C:GLN129
|
3.3
|
33.1
|
1.0
|
HG3
|
C:GLU132
|
3.4
|
55.9
|
1.0
|
CD
|
C:GLU132
|
3.5
|
42.4
|
1.0
|
CE1
|
C:HIS55
|
3.7
|
35.2
|
1.0
|
HE22
|
C:GLN129
|
3.8
|
40.1
|
1.0
|
ND1
|
C:HIS55
|
3.8
|
33.6
|
1.0
|
HE21
|
C:GLN48
|
3.9
|
37.5
|
1.0
|
CG
|
C:GLU132
|
3.9
|
46.6
|
1.0
|
O
|
C:HOH318
|
3.9
|
32.2
|
1.0
|
HG11
|
C:VAL99
|
4.0
|
42.0
|
1.0
|
HB3
|
C:GLU132
|
4.0
|
48.3
|
1.0
|
CD
|
C:GLN129
|
4.2
|
32.2
|
1.0
|
HE22
|
C:GLN48
|
4.2
|
37.5
|
1.0
|
HH
|
C:TYR26
|
4.3
|
49.2
|
1.0
|
HE2
|
C:TYR26
|
4.3
|
38.2
|
1.0
|
NE2
|
C:GLN129
|
4.3
|
33.4
|
1.0
|
OE2
|
C:GLU132
|
4.3
|
49.1
|
1.0
|
NE2
|
C:GLN48
|
4.4
|
31.3
|
1.0
|
CG
|
C:GLU96
|
4.4
|
41.8
|
1.0
|
CB
|
C:GLU132
|
4.4
|
40.3
|
1.0
|
HB2
|
C:GLU132
|
4.4
|
48.3
|
1.0
|
HG3
|
C:GLU96
|
4.6
|
50.1
|
1.0
|
CG
|
C:GLU52
|
4.6
|
34.4
|
1.0
|
HG12
|
C:VAL99
|
4.6
|
42.0
|
1.0
|
CG1
|
C:VAL99
|
4.7
|
35.0
|
1.0
|
HG21
|
C:VAL99
|
4.7
|
42.9
|
1.0
|
HA
|
C:GLU96
|
4.7
|
41.1
|
1.0
|
HG2
|
C:GLU132
|
4.8
|
55.9
|
1.0
|
OE1
|
C:GLU19
|
4.8
|
34.1
|
1.0
|
HB
|
C:VAL99
|
4.8
|
44.6
|
1.0
|
HG2
|
C:GLU96
|
4.9
|
50.1
|
1.0
|
HG2
|
C:GLU52
|
4.9
|
41.3
|
1.0
|
HG3
|
C:GLU52
|
5.0
|
41.3
|
1.0
|
HB3
|
C:SER22
|
5.0
|
33.6
|
1.0
|
NE2
|
C:HIS55
|
5.0
|
32.6
|
1.0
|
OH
|
C:TYR26
|
5.0
|
41.0
|
1.0
|
|
Iron binding site 9 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 9 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:38.6
occ:1.00
|
ND1
|
D:HIS55
|
2.0
|
38.5
|
1.0
|
OE1
|
D:GLU52
|
2.0
|
37.2
|
1.0
|
OE1
|
D:GLU19
|
2.2
|
34.7
|
1.0
|
O
|
D:HOH304
|
2.3
|
32.1
|
1.0
|
FE
|
D:FE202
|
2.8
|
58.9
|
0.5
|
CE1
|
D:HIS55
|
2.8
|
48.0
|
1.0
|
HE1
|
D:HIS55
|
2.9
|
57.6
|
1.0
|
CD
|
D:GLU52
|
3.0
|
41.3
|
1.0
|
CD
|
D:GLU19
|
3.1
|
36.5
|
1.0
|
CG
|
D:HIS55
|
3.2
|
38.5
|
1.0
|
OE2
|
D:GLU52
|
3.4
|
36.1
|
1.0
|
OE2
|
D:GLU19
|
3.4
|
34.4
|
1.0
|
HB2
|
D:HIS55
|
3.5
|
37.1
|
1.0
|
HB3
|
D:HIS55
|
3.5
|
37.1
|
1.0
|
HG11
|
D:VAL99
|
3.6
|
43.9
|
1.0
|
CB
|
D:HIS55
|
3.6
|
30.9
|
1.0
|
HA
|
D:GLU52
|
3.6
|
35.9
|
1.0
|
NE2
|
D:HIS55
|
4.0
|
38.2
|
1.0
|
OE1
|
D:GLN129
|
4.1
|
38.8
|
1.0
|
CD2
|
D:HIS55
|
4.2
|
36.3
|
1.0
|
HB3
|
D:GLU52
|
4.3
|
37.5
|
1.0
|
CG
|
D:GLU52
|
4.4
|
34.6
|
1.0
|
HB3
|
D:GLU19
|
4.4
|
33.3
|
1.0
|
CG1
|
D:VAL99
|
4.5
|
36.6
|
1.0
|
CG
|
D:GLU19
|
4.5
|
32.2
|
1.0
|
CA
|
D:GLU52
|
4.5
|
29.9
|
1.0
|
HA
|
D:GLU19
|
4.6
|
37.2
|
1.0
|
OE2
|
D:GLU96
|
4.6
|
47.9
|
1.0
|
CB
|
D:GLU52
|
4.6
|
31.3
|
1.0
|
HG12
|
D:VAL99
|
4.7
|
43.9
|
1.0
|
HG13
|
D:VAL99
|
4.7
|
43.9
|
1.0
|
HE2
|
D:HIS55
|
4.8
|
45.8
|
1.0
|
OE1
|
D:GLU96
|
4.8
|
45.6
|
1.0
|
HG3
|
D:GLU19
|
4.8
|
38.7
|
1.0
|
HB2
|
D:SER22
|
4.8
|
36.6
|
1.0
|
HG3
|
D:GLU52
|
4.9
|
41.5
|
1.0
|
CB
|
D:GLU19
|
4.9
|
27.8
|
1.0
|
HG21
|
D:VAL99
|
4.9
|
48.6
|
1.0
|
HD1
|
D:PHE125
|
4.9
|
46.2
|
1.0
|
HG2
|
D:GLU52
|
4.9
|
41.5
|
1.0
|
HG3
|
D:GLU132
|
4.9
|
60.4
|
1.0
|
HE1
|
D:PHE125
|
5.0
|
44.9
|
1.0
|
|
Iron binding site 10 out
of 16 in 7vvs
Go back to
Iron Binding Sites List in 7vvs
Iron binding site 10 out
of 16 in the PLL9 Induced Tmftn Nanocage
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of PLL9 Induced Tmftn Nanocage within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:58.9
occ:0.53
|
OE2
|
D:GLU52
|
2.2
|
36.1
|
1.0
|
OE2
|
D:GLU96
|
2.4
|
47.9
|
1.0
|
OE1
|
D:GLU96
|
2.5
|
45.6
|
1.0
|
CD
|
D:GLU96
|
2.7
|
48.0
|
1.0
|
FE
|
D:FE201
|
2.8
|
38.6
|
1.0
|
CD
|
D:GLU52
|
3.0
|
41.3
|
1.0
|
HE1
|
D:HIS55
|
3.1
|
57.6
|
1.0
|
OE1
|
D:GLU52
|
3.1
|
37.2
|
1.0
|
HG3
|
D:GLU132
|
3.2
|
60.4
|
1.0
|
OE1
|
D:GLU132
|
3.3
|
48.2
|
1.0
|
OE1
|
D:GLN129
|
3.5
|
38.8
|
1.0
|
CD
|
D:GLU132
|
3.5
|
48.7
|
1.0
|
HE21
|
D:GLN48
|
3.6
|
49.2
|
1.0
|
CE1
|
D:HIS55
|
3.7
|
48.0
|
1.0
|
CG
|
D:GLU132
|
3.7
|
50.4
|
1.0
|
HE22
|
D:GLN129
|
3.8
|
43.3
|
1.0
|
HB3
|
D:GLU132
|
3.9
|
63.7
|
1.0
|
ND1
|
D:HIS55
|
3.9
|
38.5
|
1.0
|
HG11
|
D:VAL99
|
4.0
|
43.9
|
1.0
|
HE22
|
D:GLN48
|
4.0
|
49.2
|
1.0
|
O
|
D:HOH304
|
4.1
|
32.1
|
1.0
|
HE2
|
D:TYR26
|
4.1
|
42.6
|
1.0
|
HH
|
D:TYR26
|
4.1
|
51.5
|
1.0
|
NE2
|
D:GLN48
|
4.2
|
41.0
|
1.0
|
CG
|
D:GLU96
|
4.2
|
39.8
|
1.0
|
OE2
|
D:GLU132
|
4.2
|
56.4
|
1.0
|
CB
|
D:GLU132
|
4.2
|
53.1
|
1.0
|
HB2
|
D:GLU132
|
4.2
|
63.7
|
1.0
|
HG3
|
D:GLU96
|
4.4
|
47.8
|
1.0
|
CD
|
D:GLN129
|
4.4
|
38.3
|
1.0
|
NE2
|
D:GLN129
|
4.4
|
36.1
|
1.0
|
CG
|
D:GLU52
|
4.4
|
34.6
|
1.0
|
HG21
|
D:VAL99
|
4.6
|
48.6
|
1.0
|
HG2
|
D:GLU132
|
4.6
|
60.4
|
1.0
|
HG2
|
D:GLU96
|
4.6
|
47.8
|
1.0
|
HG2
|
D:GLU52
|
4.7
|
41.5
|
1.0
|
OE1
|
D:GLU19
|
4.7
|
34.7
|
1.0
|
HG3
|
D:GLU52
|
4.7
|
41.5
|
1.0
|
CG1
|
D:VAL99
|
4.8
|
36.6
|
1.0
|
HA
|
D:GLU96
|
4.9
|
50.7
|
1.0
|
OH
|
D:TYR26
|
5.0
|
42.9
|
1.0
|
HB
|
D:VAL99
|
5.0
|
46.4
|
1.0
|
HB3
|
D:SER22
|
5.0
|
36.6
|
1.0
|
NE2
|
D:HIS55
|
5.0
|
38.2
|
1.0
|
HA
|
D:GLU52
|
5.0
|
35.9
|
1.0
|
CE2
|
D:TYR26
|
5.0
|
35.5
|
1.0
|
HG12
|
D:VAL99
|
5.0
|
43.9
|
1.0
|
|
Reference:
G.Zhao,
X.Zhang.
PLL9 Induced Tmftn Nanocage To Be Published.
Page generated: Fri Aug 9 06:02:40 2024
|