Iron in PDB 7vzg: Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)

The structure of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Calcium	(Ca)	2 atoms
Magnesium	(Mg)	26 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) (pdb code 7vzg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form), PDB code: 7vzg:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:35.6 occ:1.00 FE C:HEC301 0.0 35.6 1.0 NC C:HEC301 2.1 31.1 1.0 NB C:HEC301 2.2 34.9 1.0 NA C:HEC301 2.2 32.6 1.0 NE2 C:HIS129 2.2 4.0 1.0 ND C:HEC301 2.2 35.5 1.0 SD C:MET174 2.9 30.0 1.0 C4C C:HEC301 3.0 35.2 1.0 C1C C:HEC301 3.0 34.4 1.0 C4B C:HEC301 3.0 35.7 1.0 CE1 C:HIS129 3.1 4.0 1.0 C1B C:HEC301 3.1 36.9 1.0 C4A C:HEC301 3.1 36.6 1.0 CD2 C:HIS129 3.1 4.0 1.0 C1D C:HEC301 3.1 28.4 1.0 C4D C:HEC301 3.2 34.0 1.0 C1A C:HEC301 3.2 39.9 1.0 CHD C:HEC301 3.3 30.9 1.0 CHC C:HEC301 3.3 38.1 1.0 CHB C:HEC301 3.4 33.5 1.0 CHA C:HEC301 3.5 40.1 1.0 CG C:MET174 3.6 30.0 1.0 CE C:MET174 3.9 30.0 1.0 C3C C:HEC301 4.1 36.1 1.0 ND1 C:HIS129 4.2 4.0 1.0 CB C:MET174 4.2 30.0 1.0 C2C C:HEC301 4.2 34.3 1.0 C3B C:HEC301 4.2 30.6 1.0 CG C:HIS129 4.2 4.0 1.0 C2B C:HEC301 4.3 37.2 1.0 C2D C:HEC301 4.5 41.8 1.0 C2A C:HEC301 4.5 43.7 1.0 C3D C:HEC301 4.5 39.0 1.0 C3A C:HEC301 4.5 33.5 1.0 CA C:MET174 4.7 30.0 1.0 CZ C:PHE143 4.9 4.0 1.0

Iron binding site 2 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe917 b:38.6 occ:1.00 FE1 a:SF4917 0.0 38.6 1.0 S4 a:SF4917 2.2 38.6 1.0 S2 a:SF4917 2.3 38.6 1.0 S3 a:SF4917 2.3 38.6 1.0 SG A:CYS705 2.3 4.0 1.0 FE4 a:SF4917 2.7 38.6 1.0 FE2 a:SF4917 2.7 38.6 1.0 FE3 a:SF4917 2.7 38.6 1.0 CD2 a:LEU834 3.8 4.0 1.0 S1 a:SF4917 3.9 38.6 1.0 CB A:CYS705 3.9 4.0 1.0 CD1 a:LEU834 3.9 4.0 1.0 SG a:CYS705 4.3 4.0 1.0 CG A:LYS796 4.3 4.0 1.0 SG a:CYS696 4.4 4.0 1.0 SG A:CYS696 4.5 4.0 1.0 CG a:LEU834 4.5 4.0 1.0 N A:CYS705 4.7 4.0 1.0 CA A:CYS705 4.7 4.0 1.0 CD A:LYS796 4.7 4.0 1.0 CB A:CYS696 4.9 4.0 1.0 CE A:LYS796 4.9 4.0 1.0

Iron binding site 3 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe917 b:38.6 occ:1.00 FE2 a:SF4917 0.0 38.6 1.0 SG a:CYS705 2.2 4.0 1.0 S1 a:SF4917 2.3 38.6 1.0 S3 a:SF4917 2.3 38.6 1.0 S4 a:SF4917 2.3 38.6 1.0 FE4 a:SF4917 2.7 38.6 1.0 FE1 a:SF4917 2.7 38.6 1.0 FE3 a:SF4917 2.7 38.6 1.0 CD1 A:LEU834 3.7 4.0 1.0 CD2 A:LEU834 3.7 4.0 1.0 CB a:CYS705 3.8 4.0 1.0 S2 a:SF4917 3.9 38.6 1.0 SG A:CYS696 3.9 4.0 1.0 SG A:CYS705 4.4 4.0 1.0 CG A:LEU834 4.4 4.0 1.0 CG a:LYS796 4.6 4.0 1.0 CD a:LYS796 4.7 4.0 1.0 N a:CYS705 4.8 4.0 1.0 CA a:CYS705 4.9 4.0 1.0 SG a:CYS696 4.9 4.0 1.0 CG A:LYS796 5.0 4.0 1.0

Iron binding site 4 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe917 b:38.6 occ:1.00 FE3 a:SF4917 0.0 38.6 1.0 S2 a:SF4917 2.2 38.6 1.0 S1 a:SF4917 2.3 38.6 1.0 S4 a:SF4917 2.3 38.6 1.0 SG a:CYS696 2.3 4.0 1.0 FE4 a:SF4917 2.7 38.6 1.0 FE1 a:SF4917 2.7 38.6 1.0 FE2 a:SF4917 2.7 38.6 1.0 CB a:CYS696 3.1 4.0 1.0 SG a:CYS705 3.7 4.0 1.0 O a:GLY698 3.8 4.0 1.0 S3 a:SF4917 3.9 38.6 1.0 SG A:CYS696 4.3 4.0 1.0 C a:GLY698 4.3 4.0 1.0 N a:GLY698 4.3 4.0 1.0 CB a:CYS705 4.4 4.0 1.0 CD1 a:LEU834 4.4 4.0 1.0 CA a:GLY698 4.6 4.0 1.0 CA a:CYS696 4.6 4.0 1.0 CA A:GLY698 4.8 4.0 1.0 C A:GLY698 4.9 4.0 1.0 N A:PRO699 4.9 4.0 1.0 SG A:CYS705 4.9 4.0 1.0 CA a:CYS705 5.0 4.0 1.0

Iron binding site 5 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe917 b:38.6 occ:1.00 FE4 a:SF4917 0.0 38.6 1.0 SG A:CYS696 1.9 4.0 1.0 S1 a:SF4917 2.3 38.6 1.0 S2 a:SF4917 2.3 38.6 1.0 S3 a:SF4917 2.3 38.6 1.0 FE3 a:SF4917 2.7 38.6 1.0 FE2 a:SF4917 2.7 38.6 1.0 FE1 a:SF4917 2.7 38.6 1.0 CB A:CYS696 2.9 4.0 1.0 S4 a:SF4917 3.8 38.6 1.0 SG A:CYS705 3.9 4.0 1.0 O a:GLY698 4.1 4.0 1.0 N A:GLY698 4.2 4.0 1.0 CA A:GLY698 4.2 4.0 1.0 CA A:CYS696 4.4 4.0 1.0 CD1 A:LEU834 4.5 4.0 1.0 C a:GLY698 4.5 4.0 1.0 CB A:CYS705 4.6 4.0 1.0 C A:GLY698 4.6 4.0 1.0 SG a:CYS696 4.7 4.0 1.0 SG a:CYS705 4.7 4.0 1.0 CA A:CYS705 4.7 4.0 1.0 N a:PRO699 4.8 4.0 1.0 N A:CYS705 4.8 4.0 1.0 O A:GLY698 4.8 4.0 1.0 O A:PRO695 4.9 4.0 1.0 N A:ILE697 4.9 4.0 1.0 C A:CYS696 4.9 4.0 1.0

Iron binding site 6 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe202 b:35.6 occ:1.00 FE c:HEC202 0.0 35.6 1.0 NC c:HEC202 2.1 31.1 1.0 NA c:HEC202 2.1 32.6 1.0 NB c:HEC202 2.2 34.9 1.0 ND c:HEC202 2.2 35.5 1.0 NE2 c:HIS93 2.3 4.0 1.0 SD c:MET134 2.4 4.0 1.0 C4A c:HEC202 3.0 36.6 1.0 C1A c:HEC202 3.0 39.9 1.0 C4C c:HEC202 3.0 35.2 1.0 C4D c:HEC202 3.0 34.0 1.0 CE1 c:HIS93 3.0 4.0 1.0 C1B c:HEC202 3.0 36.9 1.0 C4B c:HEC202 3.1 35.7 1.0 C1D c:HEC202 3.1 28.4 1.0 C1C c:HEC202 3.2 34.4 1.0 CHA c:HEC202 3.2 40.1 1.0 CHB c:HEC202 3.3 33.5 1.0 CE c:MET134 3.3 4.0 1.0 CHD c:HEC202 3.3 30.9 1.0 CD2 c:HIS93 3.4 4.0 1.0 CG c:MET134 3.5 4.0 1.0 CHC c:HEC202 3.5 38.1 1.0 CB c:MET134 4.0 4.0 1.0 ND1 c:HIS93 4.2 4.0 1.0 C3C c:HEC202 4.2 36.1 1.0 C3A c:HEC202 4.2 33.5 1.0 C3D c:HEC202 4.3 39.0 1.0 C2A c:HEC202 4.3 43.7 1.0 C3B c:HEC202 4.3 30.6 1.0 C2B c:HEC202 4.3 37.2 1.0 C2D c:HEC202 4.4 41.8 1.0 CA c:MET134 4.4 4.0 1.0 CG c:HIS93 4.4 4.0 1.0 C2C c:HEC202 4.4 34.3 1.0 CD c:PRO135 5.0 4.0 1.0

Iron binding site 7 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:47.8 occ:1.00 FE1 B:SF4201 0.0 47.8 1.0 SG B:CYS86 1.8 30.0 1.0 S4 B:SF4201 2.3 47.8 1.0 S2 B:SF4201 2.3 47.8 1.0 S3 B:SF4201 2.3 47.8 1.0 FE2 B:SF4201 2.7 47.8 1.0 FE4 B:SF4201 2.7 47.8 1.0 FE3 B:SF4201 2.7 47.8 1.0 SG B:CYS89 3.4 30.0 1.0 CB B:CYS86 3.4 30.0 1.0 N B:CYS86 3.7 44.1 1.0 S1 B:SF4201 3.8 47.8 1.0 N B:GLY87 4.0 42.9 1.0 CA B:CYS86 4.0 44.1 1.0 SG B:CYS134 4.3 30.0 1.0 SG B:CYS83 4.3 30.0 1.0 N B:PHE88 4.4 43.0 1.0 C B:CYS86 4.5 44.1 1.0 N B:GLY85 4.6 44.2 1.0 CG1 B:ILE84 4.6 30.0 1.0 CD B:PRO135 4.7 30.0 1.0 N B:ILE84 4.8 44.5 1.0 C B:GLY85 4.8 44.2 1.0 CB B:PHE88 4.8 30.0 1.0 CA B:CYS134 4.8 47.0 1.0 CB B:CYS134 4.9 30.0 1.0 N B:CYS89 4.9 43.7 1.0 CG B:PRO135 4.9 30.0 1.0 CB B:CYS89 5.0 30.0 1.0 CA B:GLY85 5.0 44.2 1.0 CA B:PHE88 5.0 43.0 1.0

Iron binding site 8 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:47.8 occ:1.00 FE2 B:SF4201 0.0 47.8 1.0 SG B:CYS83 1.9 30.0 1.0 S1 B:SF4201 2.3 47.8 1.0 S3 B:SF4201 2.3 47.8 1.0 S4 B:SF4201 2.3 47.8 1.0 FE1 B:SF4201 2.7 47.8 1.0 FE4 B:SF4201 2.7 47.8 1.0 FE3 B:SF4201 2.7 47.8 1.0 CB B:CYS83 3.0 30.0 1.0 CA B:CYS83 3.5 48.2 1.0 N B:ILE84 3.7 44.5 1.0 SG B:CYS89 3.7 30.0 1.0 S2 B:SF4201 3.8 47.8 1.0 N B:GLY85 4.0 44.2 1.0 C B:CYS83 4.0 48.2 1.0 SG B:CYS86 4.3 30.0 1.0 SG B:CYS134 4.5 30.0 1.0 CD1 B:ILE78 4.7 30.0 1.0 CA B:GLY85 4.7 44.2 1.0 N B:CYS86 4.7 44.1 1.0 OG1 B:THR136 4.8 30.0 1.0 CA B:ILE84 4.8 44.5 1.0 C B:ILE84 4.8 44.5 1.0 N B:CYS83 4.8 48.2 1.0 CB B:ALA138 5.0 30.0 1.0 CB B:TYR115 5.0 30.0 1.0

Iron binding site 9 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:47.8 occ:1.00 FE3 B:SF4201 0.0 47.8 1.0 SG B:CYS134 1.9 30.0 1.0 S2 B:SF4201 2.2 47.8 1.0 S1 B:SF4201 2.3 47.8 1.0 S4 B:SF4201 2.3 47.8 1.0 FE4 B:SF4201 2.7 47.8 1.0 FE2 B:SF4201 2.7 47.8 1.0 FE1 B:SF4201 2.7 47.8 1.0 CB B:CYS134 3.0 30.0 1.0 CA B:CYS134 3.7 47.0 1.0 SG B:CYS89 3.9 30.0 1.0 OG1 B:THR136 3.9 30.0 1.0 S3 B:SF4201 3.9 47.8 1.0 SG B:CYS86 4.2 30.0 1.0 C B:CYS134 4.2 47.0 1.0 CB B:ALA138 4.4 30.0 1.0 SG B:CYS83 4.5 30.0 1.0 O B:CYS134 4.5 47.0 1.0 CG1 B:VAL139 4.6 30.0 1.0 N B:ALA138 4.6 46.0 1.0 CD B:PRO135 4.7 30.0 1.0 N B:PRO135 4.9 45.0 1.0 CA B:CYS83 4.9 48.2 1.0 CB B:CYS83 4.9 30.0 1.0 N B:ASP137 5.0 46.5 1.0

Iron binding site 10 out of 14 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:47.8 occ:1.00 FE4 B:SF4201 0.0 47.8 1.0 SG B:CYS89 1.3 30.0 1.0 S1 B:SF4201 2.3 47.8 1.0 S2 B:SF4201 2.3 47.8 1.0 S3 B:SF4201 2.3 47.8 1.0 FE3 B:SF4201 2.7 47.8 1.0 FE2 B:SF4201 2.7 47.8 1.0 FE1 B:SF4201 2.7 47.8 1.0 CB B:CYS89 2.8 30.0 1.0 S4 B:SF4201 3.9 47.8 1.0 CA B:CYS89 3.9 43.7 1.0 N B:CYS89 3.9 43.7 1.0 CD1 B:ILE78 4.1 30.0 1.0 SG B:CYS134 4.3 30.0 1.0 SG B:CYS86 4.3 30.0 1.0 SG B:CYS83 4.3 30.0 1.0 CB B:CYS134 4.7 30.0 1.0 C B:PHE88 4.7 43.0 1.0

S.Dong, G.Huang, C.Wang, J.Wang, S.F.Sui, X.Qin. Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C. Nat Commun V. 13 7745 2022.
ISSN: ESSN 2041-1723
PubMed: 36517472
DOI: 10.1038/S41467-022-35460-6