Atomistry » Iron » PDB 7vp8-7w1p » 7w0y
Atomistry »
  Iron »
    PDB 7vp8-7w1p »
      7w0y »

Iron in PDB 7w0y: Active State Ci From Q10-Nadh Dataset, Subclass 2

Enzymatic activity of Active State Ci From Q10-Nadh Dataset, Subclass 2

All present enzymatic activity of Active State Ci From Q10-Nadh Dataset, Subclass 2:
7.1.1.2;

Other elements in 7w0y:

The structure of Active State Ci From Q10-Nadh Dataset, Subclass 2 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Active State Ci From Q10-Nadh Dataset, Subclass 2 (pdb code 7w0y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Active State Ci From Q10-Nadh Dataset, Subclass 2, PDB code: 7w0y:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 1 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:23.2
occ:1.00
 FE1 A:SF4501 0.0 23.2 1.0
SG A:CYS382 2.3 19.2 1.0
S2 A:SF4501 2.3 19.6 1.0
S4 A:SF4501 2.3 17.7 1.0
S3 A:SF4501 2.3 14.5 1.0
FE3 A:SF4501 2.7 31.7 1.0
FE4 A:SF4501 2.7 13.0 1.0
FE2 A:SF4501 2.7 23.1 1.0
CB A:CYS382 3.5 4.9 1.0
CB A:CYS385 3.6 6.9 1.0
N A:CYS382 3.8 6.6 1.0
S1 A:SF4501 3.9 9.2 1.0
CA A:CYS382 4.2 2.7 1.0
N A:ILE424 4.3 16.6 1.0
CB A:ILE424 4.4 9.2 1.0
O A:CYS382 4.5 16.3 1.0
SG A:CYS385 4.5 26.7 1.0
CB A:THR423 4.6 9.2 1.0
C A:CYS382 4.7 1.9 1.0
SG A:CYS379 4.8 28.2 1.0
N A:CYS425 4.8 21.2 1.0
SG A:CYS425 4.8 24.4 1.0
N A:GLN381 4.8 8.7 1.0
CG1 A:ILE424 4.9 13.2 1.0
CA A:CYS385 4.9 9.7 1.0
CB A:GLN381 4.9 4.9 1.0
CD1 A:ILE424 4.9 11.7 1.0
N A:CYS385 4.9 10.5 1.0
CA A:ILE424 4.9 14.5 1.0
C A:GLN381 4.9 13.4 1.0

Iron binding site 2 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 2 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:23.1
occ:1.00
 FE2 A:SF4501 0.0 23.1 1.0
SG A:CYS425 2.3 24.4 1.0
S4 A:SF4501 2.3 17.7 1.0
S1 A:SF4501 2.3 9.2 1.0
S3 A:SF4501 2.3 14.5 1.0
FE4 A:SF4501 2.7 13.0 1.0
FE3 A:SF4501 2.7 31.7 1.0
FE1 A:SF4501 2.7 23.2 1.0
CB A:CYS425 3.5 12.7 1.0
S2 A:SF4501 3.9 19.6 1.0
N A:CYS425 3.9 21.2 1.0
CB A:LEU427 4.1 7.8 1.0
CA A:CYS425 4.2 14.6 1.0
CD1 A:ILE205 4.3 21.8 1.0
CG A:PRO223 4.4 19.8 1.0
C A:CYS425 4.5 18.8 1.0
N A:LEU427 4.6 17.5 1.0
O A:CYS425 4.6 21.8 1.0
SG A:CYS379 4.7 28.2 1.0
SG A:CYS385 4.7 26.7 1.0
CD A:PRO223 4.8 14.3 1.0
CB A:CYS385 4.8 6.9 1.0
SG A:CYS382 4.8 19.2 1.0
CA A:LEU427 4.9 12.8 1.0
N A:GLY428 5.0 15.6 1.0

Iron binding site 3 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 3 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:31.7
occ:1.00
 FE3 A:SF4501 0.0 31.7 1.0
SG A:CYS385 2.3 26.7 1.0
S4 A:SF4501 2.3 17.7 1.0
S2 A:SF4501 2.3 19.6 1.0
S1 A:SF4501 2.3 9.2 1.0
CB A:CYS385 2.6 6.9 1.0
FE1 A:SF4501 2.7 23.2 1.0
FE4 A:SF4501 2.7 13.0 1.0
FE2 A:SF4501 2.7 23.1 1.0
OG A:SER378 3.6 17.1 1.0
S3 A:SF4501 3.9 14.5 1.0
CA A:CYS385 4.1 9.7 1.0
CB A:SER378 4.4 7.2 1.0
CB A:LEU427 4.4 7.8 1.0
N A:CYS379 4.5 16.3 1.0
SG A:CYS382 4.5 19.2 1.0
CD2 A:LEU427 4.5 14.7 1.0
CA A:SER378 4.7 6.0 1.0
C A:CYS385 4.7 11.1 1.0
SG A:CYS425 4.7 24.4 1.0
N A:ARG386 4.8 3.3 1.0
SG A:CYS379 4.8 28.2 1.0
N A:GLY428 4.8 15.6 1.0
N A:GLY380 4.9 8.3 1.0
CG A:LEU427 4.9 12.4 1.0
N A:CYS385 5.0 10.5 1.0

Iron binding site 4 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 4 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:13.0
occ:1.00
 FE4 A:SF4501 0.0 13.0 1.0
SG A:CYS379 2.3 28.2 1.0
S3 A:SF4501 2.3 14.5 1.0
S2 A:SF4501 2.3 19.6 1.0
S1 A:SF4501 2.3 9.2 1.0
FE2 A:SF4501 2.7 23.1 1.0
FE1 A:SF4501 2.7 23.2 1.0
FE3 A:SF4501 2.7 31.7 1.0
CB A:CYS379 3.4 11.0 1.0
N A:CYS379 3.8 16.3 1.0
S4 A:SF4501 3.9 17.7 1.0
N A:GLY380 3.9 8.3 1.0
N A:GLN381 3.9 8.7 1.0
CA A:CYS379 4.0 12.2 1.0
C A:CYS379 4.2 14.6 1.0
CB A:GLN381 4.2 4.9 1.0
CD A:PRO223 4.4 14.3 1.0
CA A:GLN381 4.6 6.7 1.0
OG A:SER378 4.7 17.1 1.0
N A:CYS382 4.7 6.6 1.0
SG A:CYS425 4.8 24.4 1.0
SG A:CYS382 4.8 19.2 1.0
NE2 A:GLN381 4.8 12.6 1.0
CA A:GLY380 4.8 5.2 1.0
C A:GLY380 4.8 12.2 1.0
CD1 A:ILE205 4.9 21.8 1.0
SG A:CYS385 4.9 26.7 1.0
CG A:PRO223 4.9 19.8 1.0
CG1 A:ILE205 4.9 20.3 1.0
C A:SER378 4.9 22.7 1.0
CB A:CYS385 5.0 6.9 1.0

Iron binding site 5 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 5 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:15.1
occ:1.00
 FE1 B:SF4301 0.0 15.1 1.0
SG B:CYS113 2.3 28.6 1.0
S2 B:SF4301 2.3 16.7 1.0
S4 B:SF4301 2.3 7.6 1.0
S3 B:SF4301 2.3 14.7 1.0
FE3 B:SF4301 2.7 17.5 1.0
FE2 B:SF4301 2.7 22.5 1.0
FE4 B:SF4301 2.7 26.3 1.0
CB B:CYS113 3.3 9.5 1.0
CA B:CYS113 3.6 6.7 1.0
N B:ILE114 3.8 7.8 1.0
N B:ALA115 3.9 6.8 1.0
S1 B:SF4301 3.9 13.2 1.0
C B:CYS113 4.2 15.5 1.0
CA B:ALA115 4.4 4.6 1.0
CB B:ALA166 4.4 19.0 1.0
CE2 B:TYR145 4.5 12.8 1.0
N B:CYS116 4.5 15.0 1.0
C B:ILE114 4.8 16.0 1.0
SG B:CYS162 4.8 22.4 1.0
SG B:CYS119 4.9 17.4 1.0
CA B:ILE114 4.9 0.0 1.0
N B:CYS113 4.9 2.2 1.0
SG B:CYS116 4.9 26.5 1.0

Iron binding site 6 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 6 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:22.5
occ:1.00
 FE2 B:SF4301 0.0 22.5 1.0
SG B:CYS116 2.3 26.5 1.0
S1 B:SF4301 2.3 13.2 1.0
S3 B:SF4301 2.3 14.7 1.0
S4 B:SF4301 2.3 7.6 1.0
FE4 B:SF4301 2.7 26.3 1.0
FE3 B:SF4301 2.7 17.5 1.0
FE1 B:SF4301 2.7 15.1 1.0
N B:CYS116 3.4 15.0 1.0
CB B:CYS116 3.4 13.8 1.0
N B:LYS117 3.6 16.2 1.0
CA B:CYS116 3.8 12.0 1.0
S2 B:SF4301 3.9 16.7 1.0
C B:CYS116 4.0 18.3 1.0
N B:LEU118 4.1 19.6 1.0
C B:ALA115 4.4 12.4 1.0
N B:ALA115 4.5 6.8 1.0
CA B:LYS117 4.5 14.6 1.0
CD B:PRO163 4.5 13.9 1.0
SG B:CYS162 4.6 22.4 1.0
SG B:CYS119 4.7 17.4 1.0
CA B:ALA115 4.7 4.6 1.0
CG1 B:ILE114 4.8 11.4 1.0
SG B:CYS113 4.8 28.6 1.0
C B:LYS117 4.9 17.2 1.0
CB B:LEU118 4.9 15.4 1.0
N B:CYS119 4.9 18.4 1.0
N B:ILE114 5.0 7.8 1.0
O B:CYS116 5.0 28.7 1.0

Iron binding site 7 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 7 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:17.5
occ:1.00
 FE3 B:SF4301 0.0 17.5 1.0
SG B:CYS119 2.3 17.4 1.0
S1 B:SF4301 2.3 13.2 1.0
S4 B:SF4301 2.3 7.6 1.0
S2 B:SF4301 2.3 16.7 1.0
FE1 B:SF4301 2.7 15.1 1.0
FE2 B:SF4301 2.7 22.5 1.0
FE4 B:SF4301 2.7 26.3 1.0
CB B:CYS119 3.4 24.4 1.0
S3 B:SF4301 3.9 14.7 1.0
OH B:TYR145 4.0 18.2 1.0
N B:CYS119 4.0 18.4 1.0
CE2 B:TYR145 4.1 12.8 1.0
CD1 B:ILE130 4.2 12.1 1.0
CA B:CYS119 4.3 17.3 1.0
CG2 B:ILE167 4.5 8.8 1.0
CZ B:TYR145 4.5 7.1 1.0
N B:LYS117 4.6 16.2 1.0
SG B:CYS116 4.7 26.5 1.0
SG B:CYS113 4.7 28.6 1.0
N B:LEU118 4.7 19.6 1.0
SG B:CYS162 4.8 22.4 1.0
CA B:LYS117 4.8 14.6 1.0

Iron binding site 8 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 8 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:26.3
occ:1.00
 FE4 B:SF4301 0.0 26.3 1.0
SG B:CYS162 2.3 22.4 1.0
S3 B:SF4301 2.3 14.7 1.0
S1 B:SF4301 2.3 13.2 1.0
S2 B:SF4301 2.3 16.7 1.0
FE2 B:SF4301 2.7 22.5 1.0
FE1 B:SF4301 2.7 15.1 1.0
FE3 B:SF4301 2.7 17.5 1.0
CB B:CYS162 3.2 9.7 1.0
CB B:ALA166 3.8 19.0 1.0
CA B:CYS162 3.9 16.1 1.0
S4 B:SF4301 3.9 7.6 1.0
CG2 B:ILE167 4.1 8.8 1.0
N B:ILE167 4.4 19.8 1.0
CG2 B:VAL164 4.4 17.7 1.0
CD B:PRO163 4.5 13.9 1.0
SG B:CYS116 4.5 26.5 1.0
N B:ALA166 4.7 12.6 1.0
SG B:CYS119 4.7 17.4 1.0
C B:CYS162 4.7 18.4 1.0
CA B:ALA166 4.7 7.7 1.0
SG B:CYS113 4.8 28.6 1.0
N B:PRO163 4.9 11.6 1.0
CB B:ILE167 4.9 7.5 1.0
N B:CYS162 5.0 19.4 1.0

Iron binding site 9 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 9 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:15.8
occ:1.00
 FE1 B:SF4302 0.0 15.8 1.0
SG B:CYS123 2.3 31.6 1.0
S3 B:SF4302 2.3 5.9 1.0
S4 B:SF4302 2.3 8.5 1.0
S2 B:SF4302 2.3 22.6 1.0
FE2 B:SF4302 2.7 17.1 1.0
FE4 B:SF4302 2.7 1.0 1.0
FE3 B:SF4302 2.7 24.9 1.0
CB B:CYS123 3.2 17.1 1.0
CA B:CYS123 3.7 19.4 1.0
S1 B:SF4302 3.9 8.7 1.0
CD B:PRO124 4.1 28.1 1.0
C B:CYS123 4.4 26.9 1.0
CD1 B:ILE128 4.4 23.0 1.0
N B:PRO124 4.5 24.0 1.0
CB B:ALA127 4.5 26.9 1.0
CG1 B:ILE128 4.7 25.5 1.0
SG B:CYS155 4.8 25.6 1.0
SG B:CYS152 4.8 15.6 1.0
SG B:CYS158 4.8 25.1 1.0
CB B:CYS158 4.9 7.5 1.0
N B:CYS123 4.9 22.6 1.0
N B:ALA127 5.0 24.6 1.0

Iron binding site 10 out of 28 in 7w0y

Go back to Iron Binding Sites List in 7w0y
Iron binding site 10 out of 28 in the Active State Ci From Q10-Nadh Dataset, Subclass 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Active State Ci From Q10-Nadh Dataset, Subclass 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:17.1
occ:1.00
 FE2 B:SF4302 0.0 17.1 1.0
SG B:CYS152 2.3 15.6 1.0
S1 B:SF4302 2.3 8.7 1.0
S3 B:SF4302 2.3 5.9 1.0
S4 B:SF4302 2.3 8.5 1.0
FE1 B:SF4302 2.7 15.8 1.0
FE3 B:SF4302 2.7 24.9 1.0
FE4 B:SF4302 2.7 1.0 1.0
CB B:CYS152 3.4 9.8 1.0
NE2 B:HIS101 3.7 14.9 1.0
N B:TYR154 3.8 15.0 1.0
S2 B:SF4302 3.9 22.6 1.0
CA B:CYS152 3.9 10.8 1.0
N B:ILE153 4.0 29.3 1.0
CE1 B:HIS101 4.1 17.7 1.0
CA B:TYR154 4.3 3.5 1.0
C B:CYS152 4.4 18.3 1.0
N B:CYS155 4.5 15.6 1.0
SG B:CYS123 4.7 31.6 1.0
SG B:CYS158 4.7 25.1 1.0
SG B:CYS155 4.8 25.6 1.0
C B:ILE153 4.8 23.9 1.0
CD2 B:HIS101 4.9 10.7 1.0
CA B:ILE153 4.9 21.5 1.0
C B:TYR154 5.0 15.7 1.0
CB B:ALA127 5.0 26.9 1.0

Reference:

J.K.Gu, M.J.Yang. Active State Ci From Q10-Nadh Dataset, Subclass 2 To Be Published.
Page generated: Fri Aug 9 07:18:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy