Atomistry » Iron » PDB 7w1t-7wde » 7w4g
Atomistry »
  Iron »
    PDB 7w1t-7wde »
      7w4g »

Iron in PDB 7w4g: Active State Ci From Q1-Nadh Dataset, Subclass 5

Enzymatic activity of Active State Ci From Q1-Nadh Dataset, Subclass 5

All present enzymatic activity of Active State Ci From Q1-Nadh Dataset, Subclass 5:
7.1.1.2;

Other elements in 7w4g:

The structure of Active State Ci From Q1-Nadh Dataset, Subclass 5 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Active State Ci From Q1-Nadh Dataset, Subclass 5 (pdb code 7w4g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Active State Ci From Q1-Nadh Dataset, Subclass 5, PDB code: 7w4g:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 1 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:29.1
occ:1.00
 FE1 A:SF4501 0.0 29.1 1.0
SG A:CYS382 2.3 22.5 1.0
S2 A:SF4501 2.3 10.5 1.0
S4 A:SF4501 2.3 31.2 1.0
S3 A:SF4501 2.3 7.5 1.0
FE3 A:SF4501 2.7 25.6 1.0
FE4 A:SF4501 2.7 33.9 1.0
FE2 A:SF4501 2.7 26.3 1.0
CB A:CYS382 3.6 4.7 1.0
CB A:CYS385 3.7 7.8 1.0
N A:CYS382 3.9 10.3 1.0
S1 A:SF4501 3.9 13.2 1.0
N A:ILE424 4.3 11.3 1.0
CA A:CYS382 4.3 5.0 1.0
CB A:ILE424 4.3 14.2 1.0
SG A:CYS385 4.5 29.4 1.0
CB A:THR423 4.6 11.0 1.0
O A:CYS382 4.7 11.8 1.0
N A:CYS425 4.7 18.2 1.0
SG A:CYS425 4.8 23.6 1.0
CB A:GLN381 4.8 6.1 1.0
N A:GLN381 4.8 7.8 1.0
SG A:CYS379 4.8 24.0 1.0
C A:CYS382 4.8 4.6 1.0
CA A:ILE424 4.9 13.5 1.0
CG1 A:ILE424 4.9 14.2 1.0
C A:GLN381 4.9 13.9 1.0
CA A:CYS385 4.9 6.2 1.0
CD1 A:ILE424 5.0 14.9 1.0
N A:CYS385 5.0 16.9 1.0

Iron binding site 2 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 2 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:26.3
occ:1.00
 FE2 A:SF4501 0.0 26.3 1.0
SG A:CYS425 2.3 23.6 1.0
S4 A:SF4501 2.3 31.2 1.0
S1 A:SF4501 2.3 13.2 1.0
S3 A:SF4501 2.3 7.5 1.0
FE4 A:SF4501 2.7 33.9 1.0
FE3 A:SF4501 2.7 25.6 1.0
FE1 A:SF4501 2.7 29.1 1.0
CB A:CYS425 3.5 19.1 1.0
S2 A:SF4501 3.9 10.5 1.0
N A:CYS425 4.0 18.2 1.0
CB A:LEU427 4.0 21.4 1.0
CA A:CYS425 4.2 15.8 1.0
CD1 A:ILE205 4.4 29.2 1.0
CG A:PRO223 4.4 15.5 1.0
C A:CYS425 4.5 25.5 1.0
N A:LEU427 4.6 21.5 1.0
O A:CYS425 4.6 31.9 1.0
SG A:CYS379 4.7 24.0 1.0
SG A:CYS385 4.8 29.4 1.0
CD A:PRO223 4.8 20.4 1.0
CA A:LEU427 4.9 20.5 1.0
SG A:CYS382 4.9 22.5 1.0
CB A:CYS385 4.9 7.8 1.0

Iron binding site 3 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 3 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:25.6
occ:1.00
 FE3 A:SF4501 0.0 25.6 1.0
SG A:CYS385 2.3 29.4 1.0
S4 A:SF4501 2.3 31.2 1.0
S2 A:SF4501 2.3 10.5 1.0
S1 A:SF4501 2.3 13.2 1.0
CB A:CYS385 2.6 7.8 1.0
FE1 A:SF4501 2.7 29.1 1.0
FE2 A:SF4501 2.7 26.3 1.0
FE4 A:SF4501 2.7 33.9 1.0
OG A:SER378 3.7 20.5 1.0
S3 A:SF4501 3.9 7.5 1.0
CA A:CYS385 4.1 6.2 1.0
CB A:LEU427 4.4 21.4 1.0
CB A:SER378 4.4 15.7 1.0
CD2 A:LEU427 4.4 18.2 1.0
SG A:CYS382 4.4 22.5 1.0
N A:CYS379 4.5 13.2 1.0
CA A:SER378 4.7 18.1 1.0
SG A:CYS425 4.7 23.6 1.0
C A:CYS385 4.8 7.5 1.0
SG A:CYS379 4.8 24.0 1.0
N A:GLY380 4.8 14.6 1.0
CG A:LEU427 4.9 19.6 1.0
N A:ARG386 4.9 16.4 1.0
N A:CYS385 5.0 16.9 1.0
N A:GLY428 5.0 26.1 1.0

Iron binding site 4 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 4 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:33.9
occ:1.00
 FE4 A:SF4501 0.0 33.9 1.0
SG A:CYS379 2.3 24.0 1.0
S2 A:SF4501 2.3 10.5 1.0
S1 A:SF4501 2.3 13.2 1.0
S3 A:SF4501 2.3 7.5 1.0
FE2 A:SF4501 2.7 26.3 1.0
FE1 A:SF4501 2.7 29.1 1.0
FE3 A:SF4501 2.7 25.6 1.0
CB A:CYS379 3.5 8.9 1.0
N A:GLN381 3.8 7.8 1.0
S4 A:SF4501 3.9 31.2 1.0
N A:CYS379 3.9 13.2 1.0
N A:GLY380 3.9 14.6 1.0
CA A:CYS379 4.1 6.4 1.0
CB A:GLN381 4.1 6.1 1.0
C A:CYS379 4.2 13.1 1.0
CD A:PRO223 4.4 20.4 1.0
CA A:GLN381 4.5 2.3 1.0
N A:CYS382 4.7 10.3 1.0
SG A:CYS382 4.8 22.5 1.0
C A:GLY380 4.8 8.6 1.0
SG A:CYS425 4.8 23.6 1.0
OG A:SER378 4.8 20.5 1.0
CA A:GLY380 4.8 8.8 1.0
OE1 A:GLN381 4.9 20.1 1.0
CG A:PRO223 4.9 15.5 1.0
SG A:CYS385 4.9 29.4 1.0
CB A:CYS385 4.9 7.8 1.0
CG1 A:ILE205 5.0 21.8 1.0

Iron binding site 5 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 5 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:25.1
occ:1.00
 FE1 B:SF4301 0.0 25.1 1.0
SG B:CYS113 2.3 35.7 1.0
S2 B:SF4301 2.3 16.1 1.0
S3 B:SF4301 2.3 7.9 1.0
S4 B:SF4301 2.3 15.4 1.0
FE3 B:SF4301 2.7 23.8 1.0
FE2 B:SF4301 2.7 32.8 1.0
FE4 B:SF4301 2.7 24.9 1.0
CB B:CYS113 3.4 14.9 1.0
CA B:CYS113 3.7 12.6 1.0
N B:ILE114 3.9 18.1 1.0
N B:ALA115 3.9 25.1 1.0
S1 B:SF4301 3.9 20.9 1.0
C B:CYS113 4.2 19.9 1.0
CA B:ALA115 4.4 21.0 1.0
CB B:ALA166 4.5 27.5 1.0
CE2 B:TYR145 4.5 11.3 1.0
N B:CYS116 4.6 13.2 1.0
SG B:CYS119 4.8 9.0 1.0
C B:ILE114 4.8 14.6 1.0
SG B:CYS162 4.9 13.2 1.0
SG B:CYS116 4.9 4.5 1.0
CA B:ILE114 4.9 4.6 1.0
N B:CYS113 5.0 19.3 1.0

Iron binding site 6 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 6 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:32.8
occ:1.00
 FE2 B:SF4301 0.0 32.8 1.0
SG B:CYS116 2.3 4.5 1.0
S1 B:SF4301 2.3 20.9 1.0
S3 B:SF4301 2.3 7.9 1.0
S4 B:SF4301 2.3 15.4 1.0
FE4 B:SF4301 2.7 24.9 1.0
FE3 B:SF4301 2.7 23.8 1.0
FE1 B:SF4301 2.7 25.1 1.0
N B:CYS116 3.4 13.2 1.0
CB B:CYS116 3.5 13.6 1.0
N B:LYS117 3.7 26.9 1.0
CA B:CYS116 3.8 7.9 1.0
S2 B:SF4301 3.9 16.1 1.0
C B:CYS116 4.1 20.6 1.0
N B:LEU118 4.2 21.1 1.0
C B:ALA115 4.4 22.8 1.0
N B:ALA115 4.4 25.1 1.0
CD B:PRO163 4.6 26.8 1.0
CA B:LYS117 4.6 13.7 1.0
CG1 B:ILE114 4.7 18.8 1.0
SG B:CYS119 4.7 9.0 1.0
CA B:ALA115 4.7 21.0 1.0
SG B:CYS162 4.7 13.2 1.0
SG B:CYS113 4.8 35.7 1.0
CB B:LEU118 4.9 27.9 1.0
N B:ILE114 4.9 18.1 1.0
C B:LYS117 4.9 12.4 1.0
N B:CYS119 5.0 25.8 1.0

Iron binding site 7 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 7 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:23.8
occ:1.00
 FE3 B:SF4301 0.0 23.8 1.0
SG B:CYS119 2.3 9.0 1.0
S1 B:SF4301 2.3 20.9 1.0
S4 B:SF4301 2.3 15.4 1.0
S2 B:SF4301 2.3 16.1 1.0
FE1 B:SF4301 2.7 25.1 1.0
FE2 B:SF4301 2.7 32.8 1.0
FE4 B:SF4301 2.7 24.9 1.0
CB B:CYS119 3.5 25.2 1.0
S3 B:SF4301 3.9 7.9 1.0
N B:CYS119 4.0 25.8 1.0
OH B:TYR145 4.2 15.6 1.0
CE2 B:TYR145 4.2 11.3 1.0
CA B:CYS119 4.4 18.3 1.0
CD1 B:ILE130 4.5 15.9 1.0
CG2 B:ILE167 4.5 25.2 1.0
SG B:CYS116 4.6 4.5 1.0
SG B:CYS162 4.7 13.2 1.0
N B:LEU118 4.7 21.1 1.0
SG B:CYS113 4.7 35.7 1.0
N B:LYS117 4.7 26.9 1.0
CZ B:TYR145 4.7 9.1 1.0
CA B:LYS117 4.9 13.7 1.0

Iron binding site 8 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 8 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:24.9
occ:1.00
 FE4 B:SF4301 0.0 24.9 1.0
SG B:CYS162 2.3 13.2 1.0
S2 B:SF4301 2.3 16.1 1.0
S1 B:SF4301 2.3 20.9 1.0
S3 B:SF4301 2.3 7.9 1.0
FE2 B:SF4301 2.7 32.8 1.0
FE3 B:SF4301 2.7 23.8 1.0
FE1 B:SF4301 2.7 25.1 1.0
CB B:CYS162 3.5 26.8 1.0
CB B:ALA166 3.8 27.5 1.0
S4 B:SF4301 3.9 15.4 1.0
CA B:CYS162 4.0 14.3 1.0
CG2 B:VAL164 4.3 19.8 1.0
CG2 B:ILE167 4.4 25.2 1.0
CD B:PRO163 4.4 26.8 1.0
SG B:CYS116 4.5 4.5 1.0
N B:ILE167 4.6 29.0 1.0
N B:ALA166 4.7 21.2 1.0
CA B:ALA166 4.7 12.5 1.0
SG B:CYS119 4.8 9.0 1.0
SG B:CYS113 4.8 35.7 1.0
C B:CYS162 4.9 28.2 1.0
N B:PRO163 4.9 26.7 1.0

Iron binding site 9 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 9 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:29.6
occ:1.00
 FE1 B:SF4302 0.0 29.6 1.0
SG B:CYS123 2.3 9.8 1.0
S3 B:SF4302 2.3 9.8 1.0
S4 B:SF4302 2.3 18.4 1.0
S2 B:SF4302 2.3 18.0 1.0
FE2 B:SF4302 2.7 31.7 1.0
FE4 B:SF4302 2.7 20.2 1.0
FE3 B:SF4302 2.7 23.2 1.0
CB B:CYS123 3.3 23.3 1.0
CA B:CYS123 3.8 24.6 1.0
S1 B:SF4302 3.9 27.1 1.0
CD B:PRO124 4.2 20.5 1.0
CD1 B:ILE128 4.3 19.9 1.0
C B:CYS123 4.5 26.9 1.0
CG1 B:ILE128 4.5 23.1 1.0
N B:PRO124 4.5 21.4 1.0
CB B:ALA127 4.7 15.6 1.0
SG B:CYS155 4.8 14.1 1.0
SG B:CYS152 4.8 18.7 1.0
SG B:CYS158 4.9 26.0 1.0
CB B:CYS158 4.9 22.8 1.0
N B:ALA125 5.0 26.3 1.0

Iron binding site 10 out of 28 in 7w4g

Go back to Iron Binding Sites List in 7w4g
Iron binding site 10 out of 28 in the Active State Ci From Q1-Nadh Dataset, Subclass 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Active State Ci From Q1-Nadh Dataset, Subclass 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:31.7
occ:1.00
 FE2 B:SF4302 0.0 31.7 1.0
SG B:CYS152 2.3 18.7 1.0
S4 B:SF4302 2.3 18.4 1.0
S3 B:SF4302 2.3 9.8 1.0
S1 B:SF4302 2.3 27.1 1.0
FE3 B:SF4302 2.7 23.2 1.0
FE1 B:SF4302 2.7 29.6 1.0
FE4 B:SF4302 2.7 20.2 1.0
CB B:CYS152 3.5 16.9 1.0
NE2 B:HIS101 3.8 12.7 1.0
N B:TYR154 3.9 31.6 1.0
S2 B:SF4302 3.9 18.0 1.0
CA B:CYS152 3.9 14.3 1.0
N B:ILE153 4.0 28.9 1.0
CE1 B:HIS101 4.3 15.4 1.0
C B:CYS152 4.4 22.6 1.0
CA B:TYR154 4.4 23.1 1.0
N B:CYS155 4.6 24.4 1.0
SG B:CYS123 4.7 9.8 1.0
SG B:CYS158 4.7 26.0 1.0
SG B:CYS155 4.8 14.1 1.0
C B:ILE153 4.8 19.6 1.0
CD2 B:HIS101 4.9 10.7 1.0
CA B:ILE153 5.0 15.6 1.0

Reference:

J.Gu, T.Liu, R.Guo, L.Zhang, M.Yang. The Coupling Mechanism of Mammalian Mitochondrial Complex I Nat.Struct.Mol.Biol. V. 29 172 2022.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-022-00722-W
Page generated: Fri Aug 9 09:07:34 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy