Iron in PDB 7wfg: Subcomplexes A and E in Ndh Complex From Arabidopsis

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Subcomplexes A and E in Ndh Complex From Arabidopsis (pdb code 7wfg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Subcomplexes A and E in Ndh Complex From Arabidopsis, PDB code: 7wfg:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7wfg

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Iron binding site 1 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:91.8
occ:1.00
 FE1 I:SF4201 0.0 91.8 1.0
S2 I:SF4201 2.2 91.8 1.0
S4 I:SF4201 2.3 91.8 1.0
S3 I:SF4201 2.3 91.8 1.0
FE2 I:SF4201 2.7 91.8 1.0
FE4 I:SF4201 2.7 91.8 1.0
FE3 I:SF4201 2.7 91.8 1.0
SG I:CYS104 3.3 164.1 1.0
S1 I:SF4201 3.9 91.8 1.0
CD2 I:LEU78 4.1 122.4 1.0
CB I:CYS104 4.2 164.1 1.0
N I:PHE106 4.5 161.7 1.0
CA I:CYS104 4.5 164.1 1.0
N I:ILE105 4.5 151.7 1.0
CG I:LEU78 4.8 122.4 1.0
SG I:CYS74 4.9 130.0 1.0
CA I:PHE106 4.9 161.7 1.0
CD1 I:LEU78 5.0 122.4 1.0

Iron binding site 2 out of 12 in 7wfg

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Iron binding site 2 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:91.8
occ:1.00
 FE2 I:SF4201 0.0 91.8 1.0
S1 I:SF4201 2.3 91.8 1.0
S4 I:SF4201 2.3 91.8 1.0
S3 I:SF4201 2.3 91.8 1.0
FE1 I:SF4201 2.7 91.8 1.0
FE4 I:SF4201 2.7 91.8 1.0
FE3 I:SF4201 2.7 91.8 1.0
SG I:CYS110 2.9 144.1 1.0
S2 I:SF4201 3.9 91.8 1.0
N I:CYS110 4.2 144.1 1.0
N I:ASN109 4.3 145.7 1.0
CB I:CYS110 4.4 144.1 1.0
N I:GLY108 4.7 139.8 1.0
CA I:GLY108 4.7 139.8 1.0
CG2 I:VAL111 4.8 154.3 1.0
CA I:CYS110 4.8 144.1 1.0
N I:VAL111 4.9 154.3 1.0

Iron binding site 3 out of 12 in 7wfg

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Iron binding site 3 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:91.8
occ:1.00
 FE3 I:SF4201 0.0 91.8 1.0
S4 I:SF4201 2.2 91.8 1.0
S2 I:SF4201 2.3 91.8 1.0
S1 I:SF4201 2.3 91.8 1.0
FE1 I:SF4201 2.7 91.8 1.0
FE2 I:SF4201 2.7 91.8 1.0
FE4 I:SF4201 2.8 91.8 1.0
SG I:CYS74 3.4 130.0 1.0
CD I:PRO75 3.4 130.4 1.0
CB I:CYS74 3.8 130.0 1.0
CA I:CYS74 3.8 130.0 1.0
S3 I:SF4201 3.9 91.8 1.0
SG I:CYS107 4.0 141.2 1.0
CG I:PRO75 4.3 130.4 1.0
N I:PRO75 4.4 130.4 1.0
OD1 I:ASN109 4.4 145.7 1.0
C I:CYS74 4.7 130.0 1.0
N I:CYS74 4.9 130.0 1.0
SG I:CYS110 4.9 144.1 1.0
N I:ASN109 5.0 145.7 1.0

Iron binding site 4 out of 12 in 7wfg

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Iron binding site 4 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:91.8
occ:1.00
 FE4 I:SF4201 0.0 91.8 1.0
S3 I:SF4201 2.2 91.8 1.0
S1 I:SF4201 2.3 91.8 1.0
S2 I:SF4201 2.3 91.8 1.0
FE1 I:SF4201 2.7 91.8 1.0
FE2 I:SF4201 2.7 91.8 1.0
FE3 I:SF4201 2.8 91.8 1.0
N I:GLY108 2.9 139.8 1.0
N I:CYS107 3.1 141.2 1.0
SG I:CYS107 3.1 141.2 1.0
C I:CYS107 3.7 141.2 1.0
CA I:GLY108 3.7 139.8 1.0
CA I:CYS107 3.8 141.2 1.0
S4 I:SF4201 3.9 91.8 1.0
C I:PHE106 3.9 161.7 1.0
CA I:PHE106 4.0 161.7 1.0
CB I:CYS107 4.0 141.2 1.0
N I:PHE106 4.1 161.7 1.0
N I:ASN109 4.1 145.7 1.0
C I:GLY108 4.4 139.8 1.0
SG I:CYS104 4.8 164.1 1.0
OD1 I:ASN109 4.8 145.7 1.0
O I:CYS107 4.8 141.2 1.0
O I:PHE106 5.0 161.7 1.0
C I:ILE105 5.0 151.7 1.0

Iron binding site 5 out of 12 in 7wfg

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Iron binding site 5 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:165.3
occ:1.00
 FE1 I:SF4202 0.0 165.3 1.0
S2 I:SF4202 2.2 165.3 1.0
S3 I:SF4202 2.3 165.3 1.0
S4 I:SF4202 2.3 165.3 1.0
O I:ALA66 2.7 177.5 1.0
FE3 I:SF4202 2.7 165.3 1.0
FE4 I:SF4202 2.7 165.3 1.0
FE2 I:SF4202 2.7 165.3 1.0
N I:GLU68 3.0 143.7 1.0
SG I:CYS67 3.3 186.6 1.0
C I:ALA66 3.5 177.5 1.0
N I:VAL69 3.5 130.6 1.0
C I:CYS67 3.5 186.6 1.0
CA I:GLU68 3.6 143.7 1.0
S1 I:SF4202 3.9 165.3 1.0
C I:GLU68 4.0 143.7 1.0
CA I:CYS67 4.0 186.6 1.0
N I:CYS67 4.1 186.6 1.0
O I:CYS67 4.2 186.6 1.0
CB I:CYS67 4.2 186.6 1.0
CG1 I:VAL69 4.5 130.6 1.0
CA I:ALA66 4.5 177.5 1.0
N I:ALA66 4.6 177.5 1.0
CA I:VAL69 4.7 130.6 1.0
CB I:VAL69 4.8 130.6 1.0
CD I:PRO115 5.0 160.6 1.0
N I:CYS70 5.0 131.7 1.0
CB I:GLU68 5.0 143.7 1.0

Iron binding site 6 out of 12 in 7wfg

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Iron binding site 6 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:165.3
occ:1.00
 FE2 I:SF4202 0.0 165.3 1.0
S1 I:SF4202 2.3 165.3 1.0
S4 I:SF4202 2.3 165.3 1.0
S3 I:SF4202 2.3 165.3 1.0
FE3 I:SF4202 2.7 165.3 1.0
FE4 I:SF4202 2.7 165.3 1.0
FE1 I:SF4202 2.7 165.3 1.0
SG I:CYS64 3.7 162.8 1.0
S2 I:SF4202 3.9 165.3 1.0
SG I:CYS70 3.9 131.7 1.0
CA I:GLU68 4.6 143.7 1.0
CB I:CYS70 4.7 131.7 1.0
N I:VAL69 4.8 130.6 1.0
N I:GLU68 4.8 143.7 1.0
O I:ALA66 4.9 177.5 1.0
N I:CYS70 4.9 131.7 1.0
CB I:CYS64 5.0 162.8 1.0

Iron binding site 7 out of 12 in 7wfg

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Iron binding site 7 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:165.3
occ:1.00
 FE3 I:SF4202 0.0 165.3 1.0
S4 I:SF4202 2.2 165.3 1.0
S2 I:SF4202 2.3 165.3 1.0
S1 I:SF4202 2.3 165.3 1.0
FE2 I:SF4202 2.7 165.3 1.0
FE1 I:SF4202 2.7 165.3 1.0
FE4 I:SF4202 2.8 165.3 1.0
OG1 I:THR116 3.5 158.0 1.0
O I:ALA66 3.6 177.5 1.0
CG2 I:THR116 3.6 158.0 1.0
N I:ILE65 3.7 164.7 1.0
S3 I:SF4202 3.9 165.3 1.0
SG I:CYS64 4.0 162.8 1.0
CA I:CYS64 4.0 162.8 1.0
N I:ALA66 4.0 177.5 1.0
CB I:THR116 4.2 158.0 1.0
C I:CYS64 4.3 162.8 1.0
SG I:CYS114 4.4 143.2 1.0
CB I:CYS64 4.4 162.8 1.0
C I:ALA66 4.5 177.5 1.0
C I:ILE65 4.6 164.7 1.0
CA I:ILE65 4.7 164.7 1.0
CA I:ALA66 4.8 177.5 1.0
CG2 I:ILE65 4.9 164.7 1.0
SG I:CYS118 4.9 146.7 1.0
O I:LYS63 4.9 154.7 1.0

Iron binding site 8 out of 12 in 7wfg

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Iron binding site 8 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:165.3
occ:1.00
 FE4 I:SF4202 0.0 165.3 1.0
S3 I:SF4202 2.2 165.3 1.0
S1 I:SF4202 2.3 165.3 1.0
S2 I:SF4202 2.3 165.3 1.0
FE1 I:SF4202 2.7 165.3 1.0
FE2 I:SF4202 2.7 165.3 1.0
FE3 I:SF4202 2.8 165.3 1.0
SG I:CYS114 3.0 143.2 1.0
S4 I:SF4202 3.9 165.3 1.0
CG1 I:VAL69 3.9 130.6 1.0
OG1 I:THR116 4.1 158.0 1.0
CB I:CYS114 4.1 143.2 1.0
CD I:PRO115 4.3 160.6 1.0
CA I:CYS114 4.5 143.2 1.0
CD1 I:LEU119 4.6 160.3 1.0
N I:VAL69 4.6 130.6 1.0
N I:CYS70 4.7 131.7 1.0
N I:PRO115 4.9 160.6 1.0
SG I:CYS67 4.9 186.6 1.0
O I:ALA66 5.0 177.5 1.0
CB I:CYS70 5.0 131.7 1.0

Iron binding site 9 out of 12 in 7wfg

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Iron binding site 9 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:166.0
occ:1.00
 FE1 K:SF4301 0.0 166.0 1.0
S2 K:SF4301 2.2 166.0 1.0
S3 K:SF4301 2.3 166.0 1.0
S4 K:SF4301 2.3 166.0 1.0
FE2 K:SF4301 2.7 166.0 1.0
FE3 K:SF4301 2.7 166.0 1.0
FE4 K:SF4301 2.7 166.0 1.0
NH2 H:ARG69 2.9 178.2 1.0
NE H:ARG69 3.2 178.2 1.0
CZ H:ARG69 3.3 178.2 1.0
SG K:CYS139 3.9 119.4 1.0
S1 K:SF4301 3.9 166.0 1.0
SG K:CYS108 4.3 166.1 1.0
CD H:ARG69 4.3 178.2 1.0
NH1 H:ARG69 4.4 178.2 1.0
CE K:MET114 4.5 164.0 1.0
CA K:CYS139 4.6 119.4 1.0
CB K:CYS139 4.7 119.4 1.0
OG1 K:THR80 4.9 225.2 1.0
N K:CYS139 4.9 119.4 1.0
N K:ALA107 5.0 158.8 1.0

Iron binding site 10 out of 12 in 7wfg

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Iron binding site 10 out of 12 in the Subcomplexes A and E in Ndh Complex From Arabidopsis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Subcomplexes A and E in Ndh Complex From Arabidopsis within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:166.0
occ:1.00
 FE2 K:SF4301 0.0 166.0 1.0
S1 K:SF4301 2.3 166.0 1.0
S4 K:SF4301 2.3 166.0 1.0
S3 K:SF4301 2.3 166.0 1.0
FE4 K:SF4301 2.7 166.0 1.0
FE3 K:SF4301 2.7 166.0 1.0
FE1 K:SF4301 2.7 166.0 1.0
CA K:GLY106 3.4 179.0 1.0
SG K:CYS44 3.7 191.3 1.0
O K:GLY138 3.8 163.4 1.0
S2 K:SF4301 3.8 166.0 1.0
CA K:CYS139 3.8 119.4 1.0
C K:GLY138 3.9 163.4 1.0
N K:ALA107 3.9 158.8 1.0
N K:CYS139 3.9 119.4 1.0
C K:GLY106 4.0 179.0 1.0
CD K:PRO140 4.2 140.7 1.0
O K:MET105 4.6 204.6 1.0
CA K:GLY138 4.7 163.4 1.0
N K:GLY106 4.7 179.0 1.0
SG K:CYS139 4.8 119.4 1.0
C K:CYS139 4.8 119.4 1.0
CB K:CYS139 4.8 119.4 1.0
N K:PRO140 4.8 140.7 1.0
NH2 H:ARG69 4.9 178.2 1.0
OG1 K:THR80 4.9 225.2 1.0

Reference:

X.Su, D.Cao, X.Pan, L.Shi, Z.Liu, L.Dall'osto, R.Bassi, X.Zhang, M.Li. Supramolecular Assembly of Chloroplast Nadh Dehydrogenase-Like Complex with Photosystem I From Arabidopsis Thaliana. Mol Plant V. 15 454 2022.
ISSN: ESSN 1752-9867
PubMed: 35123031
DOI: 10.1016/J.MOLP.2022.01.020
Page generated: Wed Apr 5 06:53:10 2023

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