Iron in PDB 7wh0: Structure of C Elegans Bcmo-1

The structure of Structure of C Elegans Bcmo-1, PDB code: 7wh0 was solved by W.Pan, L.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.63 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.204, 104.733, 76.438, 90, 102.16, 90
R / Rfree (%)	16.6 / 18.9

The binding sites of Iron atom in the Structure of C Elegans Bcmo-1 (pdb code 7wh0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of C Elegans Bcmo-1, PDB code: 7wh0:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of C Elegans Bcmo-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of C Elegans Bcmo-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:25.6 occ:1.00 O4 A:OXD603 2.0 29.0 1.0 NE2 A:HIS237 2.1 24.3 1.0 NE2 A:HIS522 2.1 23.2 1.0 NE2 A:HIS308 2.2 31.9 1.0 O3 A:OXD603 2.2 31.9 1.0 NE2 A:HIS175 2.3 26.4 1.0 CE1 A:HIS308 2.5 26.3 1.0 C1 A:OXD603 2.8 33.3 1.0 C2 A:OXD603 2.8 29.8 1.0 CE1 A:HIS237 3.0 30.0 1.0 CE1 A:HIS175 3.0 28.8 1.0 CD2 A:HIS522 3.1 25.5 1.0 CE1 A:HIS522 3.1 25.9 1.0 CD2 A:HIS237 3.2 23.2 1.0 CD2 A:HIS175 3.4 25.8 1.0 CD2 A:HIS308 3.5 27.3 1.0 ND1 A:HIS308 3.7 34.1 1.0 O5 A:OXD603 4.0 42.7 1.0 O6 A:OXD603 4.1 38.0 1.0 ND1 A:HIS237 4.2 28.1 1.0 ND1 A:HIS522 4.2 22.6 1.0 CG A:HIS522 4.2 24.2 1.0 ND1 A:HIS175 4.2 31.4 1.0 CG A:HIS308 4.2 26.8 1.0 CG A:HIS237 4.3 24.4 1.0 CG1 A:VAL129 4.4 25.8 1.0 CG A:HIS175 4.4 25.7 1.0 CE1 A:PHE408 5.0 26.2 1.0

Iron binding site 2 out of 2 in the Structure of C Elegans Bcmo-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of C Elegans Bcmo-1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:29.6 occ:1.00 O4 B:OXD603 1.9 30.1 1.0 NE2 B:HIS308 2.0 31.3 1.0 NE2 B:HIS237 2.1 31.3 1.0 NE2 B:HIS522 2.2 32.5 1.0 NE2 B:HIS175 2.4 33.5 1.0 O3 B:OXD603 2.4 34.7 1.0 CE1 B:HIS308 2.5 34.0 1.0 C2 B:OXD603 2.8 33.4 1.0 C1 B:OXD603 3.0 34.9 1.0 CE1 B:HIS237 3.0 32.0 1.0 CD2 B:HIS522 3.1 27.3 1.0 CD2 B:HIS237 3.1 27.9 1.0 CE1 B:HIS175 3.2 33.5 1.0 CE1 B:HIS522 3.2 29.3 1.0 CD2 B:HIS308 3.3 31.7 1.0 CD2 B:HIS175 3.4 29.9 1.0 ND1 B:HIS308 3.8 35.2 1.0 O6 B:OXD603 4.0 39.4 1.0 ND1 B:HIS237 4.2 31.2 1.0 CG B:HIS308 4.2 31.5 1.0 O5 B:OXD603 4.2 41.2 1.0 CG B:HIS237 4.3 27.3 1.0 CG B:HIS522 4.3 30.4 1.0 ND1 B:HIS522 4.3 28.4 1.0 ND1 B:HIS175 4.3 35.4 1.0 CG B:HIS175 4.5 30.2 1.0 CG1 B:VAL129 4.5 28.7 1.0 CE1 B:PHE408 4.8 32.6 1.0

W.Pan, Y.L.Zhou, J.Wang, H.E.Dai, X.Wang, L.Liu. Structural and Functional Analysis of Nonheme Iron Enzymes Bcmo-1 and Bcmo-2 From Caenorhabditis Elegans . Front Mol Biosci V. 9 44453 2022.
ISSN: ESSN 2296-889X
PubMed: 35223999
DOI: 10.3389/FMOLB.2022.844453