Iron in PDB 7wlf: Crystal Structure of the Hsa Fe Complex
Protein crystallography data
The structure of Crystal Structure of the Hsa Fe Complex, PDB code: 7wlf
was solved by
H.H.Bai,
L.L.Xie,
W.M.Wang,
H.F.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.99 /
2.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
179.502,
38.165,
95.777,
90,
105.08,
90
|
R / Rfree (%)
|
20.9 /
28.2
|
Other elements in 7wlf:
The structure of Crystal Structure of the Hsa Fe Complex also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Hsa Fe Complex
(pdb code 7wlf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the
Crystal Structure of the Hsa Fe Complex, PDB code: 7wlf:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
Iron binding site 1 out
of 5 in 7wlf
Go back to
Iron Binding Sites List in 7wlf
Iron binding site 1 out
of 5 in the Crystal Structure of the Hsa Fe Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Hsa Fe Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:64.9
occ:0.46
|
NAL
|
A:9IZ602
|
1.8
|
82.5
|
1.0
|
NAX
|
A:9IZ602
|
1.9
|
73.3
|
1.0
|
NAN
|
A:9IZ602
|
2.0
|
76.1
|
1.0
|
NAA
|
A:9IZ602
|
2.0
|
77.7
|
1.0
|
NE2
|
A:HIS288
|
2.1
|
75.8
|
1.0
|
NAW
|
A:9IZ602
|
2.2
|
86.1
|
1.0
|
CAG
|
A:9IZ602
|
2.6
|
81.8
|
1.0
|
CAR
|
A:9IZ602
|
2.6
|
77.2
|
1.0
|
CAF
|
A:9IZ602
|
2.6
|
83.1
|
1.0
|
CAP
|
A:9IZ602
|
2.7
|
79.0
|
1.0
|
CAK
|
A:9IZ602
|
2.7
|
83.2
|
1.0
|
CAQ
|
A:9IZ602
|
2.8
|
82.9
|
1.0
|
CAO
|
A:9IZ602
|
2.8
|
77.4
|
1.0
|
CAM
|
A:9IZ602
|
3.0
|
80.2
|
1.0
|
CAY
|
A:9IZ602
|
3.0
|
78.3
|
1.0
|
CD2
|
A:HIS288
|
3.0
|
72.0
|
1.0
|
CE1
|
A:HIS288
|
3.1
|
73.7
|
1.0
|
CAB
|
A:9IZ602
|
3.1
|
79.9
|
1.0
|
CAV
|
A:9IZ602
|
3.3
|
80.1
|
1.0
|
CAH
|
A:9IZ602
|
3.9
|
80.2
|
1.0
|
CBB
|
A:9IZ602
|
3.9
|
74.8
|
1.0
|
CAE
|
A:9IZ602
|
4.0
|
87.9
|
1.0
|
CAJ
|
A:9IZ602
|
4.0
|
77.7
|
1.0
|
CAS
|
A:9IZ602
|
4.1
|
79.5
|
1.0
|
CG
|
A:HIS288
|
4.2
|
75.2
|
1.0
|
CAZ
|
A:9IZ602
|
4.2
|
76.9
|
1.0
|
ND1
|
A:HIS288
|
4.2
|
73.5
|
1.0
|
CAC
|
A:9IZ602
|
4.3
|
80.5
|
1.0
|
CAU
|
A:9IZ602
|
4.4
|
79.9
|
1.0
|
CAI
|
A:9IZ602
|
4.4
|
79.0
|
1.0
|
CBA
|
A:9IZ602
|
4.5
|
77.5
|
1.0
|
CAD
|
A:9IZ602
|
4.7
|
86.6
|
1.0
|
CAT
|
A:9IZ602
|
4.8
|
78.8
|
1.0
|
|
Iron binding site 2 out
of 5 in 7wlf
Go back to
Iron Binding Sites List in 7wlf
Iron binding site 2 out
of 5 in the Crystal Structure of the Hsa Fe Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Hsa Fe Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:98.8
occ:0.68
|
O
|
A:HOH785
|
2.3
|
85.5
|
1.0
|
CL
|
A:CL624
|
2.4
|
106.0
|
1.0
|
NE2
|
A:HIS128
|
2.4
|
99.2
|
1.0
|
CL
|
A:CL623
|
2.5
|
119.8
|
1.0
|
CD2
|
A:HIS128
|
3.2
|
99.6
|
1.0
|
CE1
|
A:HIS128
|
3.5
|
90.6
|
1.0
|
CG
|
A:HIS128
|
4.4
|
94.8
|
1.0
|
ND1
|
A:HIS128
|
4.5
|
91.4
|
1.0
|
|
Iron binding site 3 out
of 5 in 7wlf
Go back to
Iron Binding Sites List in 7wlf
Iron binding site 3 out
of 5 in the Crystal Structure of the Hsa Fe Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Hsa Fe Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe605
b:80.0
occ:0.50
|
O
|
A:HOH789
|
2.1
|
91.4
|
1.0
|
CL
|
A:CL622
|
2.2
|
95.0
|
1.0
|
CL
|
A:CL621
|
2.3
|
112.0
|
1.0
|
CE1
|
A:HIS367
|
3.0
|
88.7
|
1.0
|
NE2
|
A:HIS367
|
3.0
|
90.1
|
1.0
|
ND1
|
A:HIS367
|
4.3
|
83.2
|
1.0
|
CD2
|
A:HIS367
|
4.4
|
83.3
|
1.0
|
CG
|
A:GLU311
|
4.9
|
78.8
|
1.0
|
|
Iron binding site 4 out
of 5 in 7wlf
Go back to
Iron Binding Sites List in 7wlf
Iron binding site 4 out
of 5 in the Crystal Structure of the Hsa Fe Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Hsa Fe Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe606
b:71.2
occ:0.55
|
O
|
A:HOH786
|
1.7
|
67.0
|
1.0
|
O
|
A:HOH773
|
1.8
|
67.9
|
1.0
|
O
|
A:HOH782
|
1.8
|
73.1
|
1.0
|
O
|
A:HOH764
|
1.9
|
65.9
|
1.0
|
O
|
A:HOH770
|
1.9
|
55.4
|
1.0
|
O
|
A:HOH763
|
2.1
|
57.0
|
1.0
|
CB
|
A:SER454
|
3.9
|
64.2
|
1.0
|
CA
|
A:SER454
|
4.2
|
67.0
|
1.0
|
O
|
A:HOH723
|
4.3
|
65.4
|
1.0
|
CB
|
A:ARG485
|
4.5
|
60.1
|
1.0
|
N
|
A:SER454
|
4.6
|
64.3
|
1.0
|
CG2
|
A:VAL344
|
4.8
|
60.5
|
1.0
|
CD1
|
A:LEU457
|
4.8
|
56.2
|
1.0
|
CG1
|
A:VAL344
|
4.9
|
66.7
|
1.0
|
N
|
A:ARG485
|
5.0
|
61.7
|
1.0
|
CD
|
A:ARG484
|
5.0
|
59.5
|
1.0
|
|
Iron binding site 5 out
of 5 in 7wlf
Go back to
Iron Binding Sites List in 7wlf
Iron binding site 5 out
of 5 in the Crystal Structure of the Hsa Fe Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Hsa Fe Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe607
b:120.0
occ:1.00
|
NE2
|
A:HIS510
|
2.7
|
97.2
|
1.0
|
CE1
|
A:HIS510
|
2.7
|
102.8
|
1.0
|
O
|
A:HOH788
|
3.1
|
60.0
|
1.0
|
O
|
A:HOH776
|
3.1
|
75.9
|
1.0
|
O
|
A:HOH742
|
3.3
|
85.2
|
1.0
|
CD2
|
A:HIS510
|
3.6
|
102.5
|
1.0
|
ND1
|
A:HIS510
|
3.6
|
102.9
|
1.0
|
CG
|
A:HIS510
|
4.1
|
95.0
|
1.0
|
|
Reference:
H.H.Bai,
L.L.Xie,
W.M.Wang,
H.F.Wang.
Crystal Structure of the Hsa Fe Complex To Be Published.
Page generated: Fri Aug 9 10:28:28 2024
|