Iron in PDB 7wpy: ANDA_M119A_N121V Variant

The structure of ANDA_M119A_N121V Variant, PDB code: 7wpy was solved by T.Mori, H.Chen, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.45 / 2.25
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.517, 73.763, 97.484, 90, 90, 90
R / Rfree (%)	18.8 / 24.2

The binding sites of Iron atom in the ANDA_M119A_N121V Variant (pdb code 7wpy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the ANDA_M119A_N121V Variant, PDB code: 7wpy:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of ANDA_M119A_N121V Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:63.4 occ:1.00 NE2 A:HIS213 2.1 34.5 1.0 OD1 A:ASP137 2.2 33.1 1.0 O A:HOH485 2.4 32.8 1.0 O A:HOH409 2.5 36.6 1.0 NE2 A:HIS135 2.6 33.2 1.0 CE1 A:HIS213 2.9 30.6 1.0 CG A:ASP137 3.0 35.7 1.0 OD2 A:ASP137 3.2 32.0 1.0 CD2 A:HIS213 3.3 29.6 1.0 CE1 A:HIS135 3.5 35.9 1.0 CD2 A:HIS135 3.5 34.1 1.0 ND1 A:HIS213 4.1 31.0 1.0 CG A:HIS213 4.3 32.1 1.0 CB A:ASP137 4.4 31.7 1.0 OE1 A:GLN132 4.6 38.7 1.0 ND1 A:HIS135 4.6 36.7 1.0 CG A:HIS135 4.6 37.3 1.0 CA A:ASP137 4.8 31.9 1.0 CZ A:PHE207 5.0 30.6 1.0

Iron binding site 2 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of ANDA_M119A_N121V Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:63.3 occ:1.00 OD1 B:ASP137 2.3 35.4 1.0 O B:HOH404 2.3 33.0 1.0 O B:HOH485 2.3 34.0 1.0 NE2 B:HIS213 2.4 34.4 1.0 O B:HOH467 2.4 37.9 1.0 NE2 B:HIS135 2.5 34.7 1.0 CE1 B:HIS213 3.0 31.1 1.0 CG B:ASP137 3.1 36.8 1.0 OD2 B:ASP137 3.3 36.8 1.0 CD2 B:HIS135 3.4 31.5 1.0 CE1 B:HIS135 3.5 32.2 1.0 CD2 B:HIS213 3.5 29.9 1.0 ND1 B:HIS213 4.2 27.3 1.0 CG B:HIS213 4.4 29.5 1.0 OE1 B:GLN132 4.5 37.0 1.0 CG B:HIS135 4.5 36.5 1.0 ND1 B:HIS135 4.5 34.1 1.0 CB B:ASP137 4.5 33.8 1.0 CA B:ASP137 4.9 35.5 1.0

Iron binding site 3 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of ANDA_M119A_N121V Variant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:57.0 occ:1.00 O C:HOH413 2.3 32.6 1.0 OD1 C:ASP137 2.3 32.0 1.0 NE2 C:HIS135 2.3 30.4 1.0 O C:HOH414 2.4 33.1 1.0 NE2 C:HIS213 2.4 32.7 1.0 O C:HOH492 2.8 44.4 1.0 CE1 C:HIS213 3.1 34.1 1.0 CG C:ASP137 3.2 30.8 1.0 CE1 C:HIS135 3.3 30.7 1.0 CD2 C:HIS135 3.3 30.6 1.0 OD2 C:ASP137 3.5 34.4 1.0 CD2 C:HIS213 3.5 26.2 1.0 ND1 C:HIS213 4.3 30.4 1.0 ND1 C:HIS135 4.4 33.3 1.0 CG C:HIS135 4.4 32.2 1.0 CG C:HIS213 4.5 31.3 1.0 CB C:ASP137 4.6 29.9 1.0 OE1 C:GLN132 4.6 32.5 1.0 CA C:ASP137 4.8 27.6 1.0

Iron binding site 4 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of ANDA_M119A_N121V Variant within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:61.0 occ:1.00 O D:HOH402 2.2 35.4 1.0 OD1 D:ASP137 2.3 38.6 1.0 NE2 D:HIS213 2.4 30.6 1.0 O D:HOH482 2.4 39.0 1.0 O D:HOH414 2.4 32.1 1.0 NE2 D:HIS135 2.4 35.2 1.0 CE1 D:HIS213 3.1 33.4 1.0 CG D:ASP137 3.1 32.8 1.0 OD2 D:ASP137 3.2 35.5 1.0 CE1 D:HIS135 3.4 30.4 1.0 CD2 D:HIS135 3.4 30.6 1.0 CD2 D:HIS213 3.5 30.2 1.0 ND1 D:HIS213 4.3 33.2 1.0 CB D:ASP137 4.5 30.0 1.0 ND1 D:HIS135 4.5 34.6 1.0 CG D:HIS213 4.5 33.9 1.0 CG D:HIS135 4.6 31.8 1.0 OE1 D:GLN132 4.6 30.4 1.0 CA D:ASP137 4.9 27.9 1.0

T.Mori, H.Chen, I.Abe. ANDA_M119A_N121V Variant To Be Published.