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Iron in PDB 7wpy: ANDA_M119A_N121V Variant

Protein crystallography data

The structure of ANDA_M119A_N121V Variant, PDB code: 7wpy was solved by T.Mori, H.Chen, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.45 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.517, 73.763, 97.484, 90, 90, 90
R / Rfree (%) 18.8 / 24.2

Iron Binding Sites:

The binding sites of Iron atom in the ANDA_M119A_N121V Variant (pdb code 7wpy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the ANDA_M119A_N121V Variant, PDB code: 7wpy:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7wpy

Go back to Iron Binding Sites List in 7wpy
Iron binding site 1 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of ANDA_M119A_N121V Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:63.4
occ:1.00
NE2 A:HIS213 2.1 34.5 1.0
OD1 A:ASP137 2.2 33.1 1.0
O A:HOH485 2.4 32.8 1.0
O A:HOH409 2.5 36.6 1.0
NE2 A:HIS135 2.6 33.2 1.0
CE1 A:HIS213 2.9 30.6 1.0
CG A:ASP137 3.0 35.7 1.0
OD2 A:ASP137 3.2 32.0 1.0
CD2 A:HIS213 3.3 29.6 1.0
CE1 A:HIS135 3.5 35.9 1.0
CD2 A:HIS135 3.5 34.1 1.0
ND1 A:HIS213 4.1 31.0 1.0
CG A:HIS213 4.3 32.1 1.0
CB A:ASP137 4.4 31.7 1.0
OE1 A:GLN132 4.6 38.7 1.0
ND1 A:HIS135 4.6 36.7 1.0
CG A:HIS135 4.6 37.3 1.0
CA A:ASP137 4.8 31.9 1.0
CZ A:PHE207 5.0 30.6 1.0

Iron binding site 2 out of 4 in 7wpy

Go back to Iron Binding Sites List in 7wpy
Iron binding site 2 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of ANDA_M119A_N121V Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:63.3
occ:1.00
OD1 B:ASP137 2.3 35.4 1.0
O B:HOH404 2.3 33.0 1.0
O B:HOH485 2.3 34.0 1.0
NE2 B:HIS213 2.4 34.4 1.0
O B:HOH467 2.4 37.9 1.0
NE2 B:HIS135 2.5 34.7 1.0
CE1 B:HIS213 3.0 31.1 1.0
CG B:ASP137 3.1 36.8 1.0
OD2 B:ASP137 3.3 36.8 1.0
CD2 B:HIS135 3.4 31.5 1.0
CE1 B:HIS135 3.5 32.2 1.0
CD2 B:HIS213 3.5 29.9 1.0
ND1 B:HIS213 4.2 27.3 1.0
CG B:HIS213 4.4 29.5 1.0
OE1 B:GLN132 4.5 37.0 1.0
CG B:HIS135 4.5 36.5 1.0
ND1 B:HIS135 4.5 34.1 1.0
CB B:ASP137 4.5 33.8 1.0
CA B:ASP137 4.9 35.5 1.0

Iron binding site 3 out of 4 in 7wpy

Go back to Iron Binding Sites List in 7wpy
Iron binding site 3 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of ANDA_M119A_N121V Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe301

b:57.0
occ:1.00
O C:HOH413 2.3 32.6 1.0
OD1 C:ASP137 2.3 32.0 1.0
NE2 C:HIS135 2.3 30.4 1.0
O C:HOH414 2.4 33.1 1.0
NE2 C:HIS213 2.4 32.7 1.0
O C:HOH492 2.8 44.4 1.0
CE1 C:HIS213 3.1 34.1 1.0
CG C:ASP137 3.2 30.8 1.0
CE1 C:HIS135 3.3 30.7 1.0
CD2 C:HIS135 3.3 30.6 1.0
OD2 C:ASP137 3.5 34.4 1.0
CD2 C:HIS213 3.5 26.2 1.0
ND1 C:HIS213 4.3 30.4 1.0
ND1 C:HIS135 4.4 33.3 1.0
CG C:HIS135 4.4 32.2 1.0
CG C:HIS213 4.5 31.3 1.0
CB C:ASP137 4.6 29.9 1.0
OE1 C:GLN132 4.6 32.5 1.0
CA C:ASP137 4.8 27.6 1.0

Iron binding site 4 out of 4 in 7wpy

Go back to Iron Binding Sites List in 7wpy
Iron binding site 4 out of 4 in the ANDA_M119A_N121V Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of ANDA_M119A_N121V Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe301

b:61.0
occ:1.00
O D:HOH402 2.2 35.4 1.0
OD1 D:ASP137 2.3 38.6 1.0
NE2 D:HIS213 2.4 30.6 1.0
O D:HOH482 2.4 39.0 1.0
O D:HOH414 2.4 32.1 1.0
NE2 D:HIS135 2.4 35.2 1.0
CE1 D:HIS213 3.1 33.4 1.0
CG D:ASP137 3.1 32.8 1.0
OD2 D:ASP137 3.2 35.5 1.0
CE1 D:HIS135 3.4 30.4 1.0
CD2 D:HIS135 3.4 30.6 1.0
CD2 D:HIS213 3.5 30.2 1.0
ND1 D:HIS213 4.3 33.2 1.0
CB D:ASP137 4.5 30.0 1.0
ND1 D:HIS135 4.5 34.6 1.0
CG D:HIS213 4.5 33.9 1.0
CG D:HIS135 4.6 31.8 1.0
OE1 D:GLN132 4.6 30.4 1.0
CA D:ASP137 4.9 27.9 1.0

Reference:

T.Mori, H.Chen, I.Abe. ANDA_M119A_N121V Variant To Be Published.
Page generated: Fri Aug 9 10:28:36 2024

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