Iron in PDB 7wst: Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma

The binding sites of Iron atom in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma (pdb code 7wst). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma, PDB code: 7wst:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:61.6 occ:1.00 O4 A:554803 2.0 43.9 1.0 O6 A:554803 2.0 43.9 1.0 O1 A:554803 2.0 43.9 1.0 O8 A:554803 2.0 43.9 1.0 N2 A:554803 2.5 43.9 1.0 N1 A:554803 2.5 43.9 1.0 C12 A:554803 2.7 43.9 1.0 C11 A:554803 2.8 43.9 1.0 C8 A:554803 2.9 43.9 1.0 C1 A:554803 2.9 43.9 1.0 C7 A:554803 3.1 43.9 1.0 C9 A:554803 3.2 43.9 1.0 C2 A:554803 3.2 43.9 1.0 C4 A:554803 3.5 43.9 1.0 C5 A:554803 3.5 43.9 1.0 C10 A:554803 3.6 43.9 1.0 C3 A:554803 3.8 43.9 1.0 C6 A:554803 3.8 43.9 1.0 O7 A:554803 3.9 43.9 1.0 O5 A:554803 4.0 43.9 1.0 O A:PHE130 4.1 36.8 1.0 O2 A:554803 4.1 43.9 1.0 NZ A:LYS482 4.3 37.6 1.0 CB A:TYR451 4.8 37.8 1.0 OG A:SER136 4.8 42.3 1.0

Iron binding site 2 out of 2 in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Dma within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe703 b:61.5 occ:1.00 O4 B:554704 2.0 44.2 1.0 O6 B:554704 2.0 44.2 1.0 O1 B:554704 2.0 44.2 1.0 O8 B:554704 2.0 44.2 1.0 N2 B:554704 2.5 44.2 1.0 N1 B:554704 2.5 44.2 1.0 C12 B:554704 2.7 44.2 1.0 C11 B:554704 2.8 44.2 1.0 C8 B:554704 2.9 44.2 1.0 C1 B:554704 2.9 44.2 1.0 C7 B:554704 3.1 44.2 1.0 C9 B:554704 3.2 44.2 1.0 C2 B:554704 3.2 44.2 1.0 C4 B:554704 3.5 44.2 1.0 C5 B:554704 3.5 44.2 1.0 C10 B:554704 3.6 44.2 1.0 C3 B:554704 3.8 44.2 1.0 C6 B:554704 3.8 44.2 1.0 O7 B:554704 3.9 44.2 1.0 O5 B:554704 4.0 44.2 1.0 O B:PHE130 4.1 36.8 1.0 O2 B:554704 4.1 44.2 1.0 NZ B:LYS482 4.3 37.8 1.0 CB B:TYR451 4.8 37.9 1.0 OG B:SER136 4.8 42.2 1.0

A.Yamagata, Y.Murata, K.Namba, T.Terada, S.Fukai, M.Shirousu. Uptake Mechanism of Iron-Phytosiderophore From the Soil Based on the Structure of Yellow Stripe Transporter. Nat Commun 2022.
ISSN: ESSN 2041-1723