Atomistry » Iron » PDB 7wdg-7xdp » 7wsx
Atomistry »
  Iron »
    PDB 7wdg-7xdp »
      7wsx »

Iron in PDB 7wsx: Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis

Enzymatic activity of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis

All present enzymatic activity of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis:
1.7.99.1;

Protein crystallography data

The structure of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis, PDB code: 7wsx was solved by T.Fujishiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.93, 70.56, 106.34, 90, 106.85, 90
R / Rfree (%) 21 / 25.6

Iron Binding Sites:

The binding sites of Iron atom in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis (pdb code 7wsx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis, PDB code: 7wsx:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 1 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:121.2
occ:1.00
 FE5 A:FS2601 0.0 121.2 1.0
O1 A:FS2601 1.7 75.0 1.0
SG A:CYS375 2.2 83.3 1.0
S5 A:FS2601 2.3 78.9 1.0
S6 A:FS2601 2.3 87.3 1.0
CB A:CYS375 2.6 72.0 1.0
FE6 A:FS2601 2.7 96.3 1.0
FE8 A:FS2601 3.3 125.9 1.0
CG A:GLU217 3.5 61.3 1.0
FE7 A:FS2601 3.6 74.0 1.0
O8 A:FS2601 3.6 84.9 1.0
CA A:CYS375 3.7 59.7 1.0
CD1 A:TRP241 3.7 66.6 1.0
N A:CYS375 3.8 58.0 1.0
O9 A:FS2601 3.9 92.7 1.0
CD A:GLU217 4.2 61.6 1.0
NE1 A:TRP241 4.5 64.9 1.0
CG A:TRP241 4.6 69.3 1.0
OE2 A:GLU217 4.6 69.2 1.0
CE1 A:HIS193 4.6 59.4 1.0
SG A:CYS261 4.7 88.8 1.0
NE2 A:HIS193 4.8 57.2 1.0
CB A:GLU217 4.8 54.5 1.0
OE1 A:GLU217 4.8 52.2 1.0
C A:ALA374 4.8 65.9 1.0
CB A:TRP241 4.8 64.9 1.0
CA A:CSS347 5.0 71.2 1.0
C A:CYS375 5.0 64.8 1.0

Iron binding site 2 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 2 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:96.3
occ:1.00
 FE6 A:FS2601 0.0 96.3 1.0
O8 A:FS2601 2.1 84.9 1.0
SG A:CYS261 2.1 88.8 1.0
S5 A:FS2601 2.2 78.9 1.0
S6 A:FS2601 2.3 87.3 1.0
FE5 A:FS2601 2.7 121.2 1.0
CB A:CYS261 3.0 68.4 1.0
FE8 A:FS2601 3.1 125.9 1.0
O1 A:FS2601 3.1 75.0 1.0
CD1 A:TRP241 3.6 66.6 1.0
NE1 A:TRP241 4.0 64.9 1.0
CG A:TRP241 4.0 69.3 1.0
CE1 A:HIS193 4.1 59.4 1.0
SD A:CSS347 4.1 118.1 1.0
O9 A:FS2601 4.3 92.7 1.0
CA A:CYS261 4.3 66.4 1.0
SG A:CYS375 4.5 83.3 1.0
CB A:TRP241 4.5 64.9 1.0
CE2 A:TRP241 4.5 68.5 1.0
FE7 A:FS2601 4.6 74.0 1.0
CD2 A:TRP241 4.6 67.8 1.0
CD A:LYS436 4.7 71.1 1.0
N A:CYS261 4.7 67.5 1.0
NE2 A:HIS193 4.8 57.2 1.0
C A:ASN260 5.0 59.3 1.0
NZ A:LYS436 5.0 68.0 1.0

Iron binding site 3 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 3 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:74.0
occ:1.00
 FE7 A:FS2601 0.0 74.0 1.0
OE2 A:GLU217 1.7 69.2 1.0
O9 A:FS2601 2.1 92.7 1.0
NE2 A:HIS193 2.1 57.2 1.0
O1 A:FS2601 2.2 75.0 1.0
SG A:CYS400 2.4 63.0 1.0
CD A:GLU217 2.4 61.6 1.0
CG A:GLU217 2.7 61.3 1.0
CE1 A:HIS193 3.0 59.4 1.0
CD2 A:HIS193 3.2 60.5 1.0
CB A:CYS400 3.3 66.5 1.0
FE8 A:FS2601 3.5 125.9 1.0
OE1 A:GLU217 3.5 52.2 1.0
O8 A:FS2601 3.5 84.9 1.0
FE5 A:FS2601 3.6 121.2 1.0
N A:CYS400 3.7 59.1 1.0
CB A:GLU217 3.8 54.5 1.0
S5 A:FS2601 4.1 78.9 1.0
CA A:CYS400 4.1 60.7 1.0
ND1 A:HIS193 4.1 61.3 1.0
CG A:HIS193 4.2 59.0 1.0
CB A:ALA374 4.3 55.3 1.0
CA A:ALA374 4.4 62.6 1.0
FE6 A:FS2601 4.6 96.3 1.0
SD A:CSS347 4.6 118.1 1.0
N A:CYS375 4.7 58.0 1.0
CB A:GLN399 4.8 67.2 1.0
C A:GLN399 4.9 65.0 1.0
S6 A:FS2601 4.9 87.3 1.0
C A:ALA374 5.0 65.9 1.0

Iron binding site 4 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 4 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:125.9
occ:1.00
 FE8 A:FS2601 0.0 125.9 1.0
SD A:CSS347 1.9 118.1 1.0
O9 A:FS2601 1.9 92.7 1.0
O1 A:FS2601 2.2 75.0 1.0
O8 A:FS2601 2.3 84.9 1.0
S6 A:FS2601 2.4 87.3 1.0
SG A:CSS347 2.5 71.2 1.0
CB A:CSS347 2.9 74.1 1.0
FE6 A:FS2601 3.1 96.3 1.0
FE5 A:FS2601 3.3 121.2 1.0
CA A:CSS347 3.4 71.2 1.0
FE7 A:FS2601 3.5 74.0 1.0
N A:CSS347 4.2 61.6 1.0
S5 A:FS2601 4.4 78.9 1.0
SG A:CYS400 4.6 63.0 1.0
C A:CSS347 4.6 71.0 1.0
NE2 A:HIS193 4.7 57.2 1.0
SG A:CYS261 4.7 88.8 1.0
CB A:CYS400 4.8 66.5 1.0
CE1 A:HIS193 4.8 59.4 1.0
N A:ASP348 4.8 69.7 1.0
CD A:LYS436 4.9 71.1 1.0
CB A:CYS375 4.9 72.0 1.0
CB A:ALA374 4.9 55.3 1.0
CB A:LYS436 5.0 77.3 1.0

Iron binding site 5 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 5 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:141.4
occ:1.00
 FE5 B:FS2601 0.0 141.4 1.0
O1 B:FS2601 1.7 97.7 1.0
S5 B:FS2601 2.3 128.9 1.0
S6 B:FS2601 2.3 106.6 1.0
SG B:CYS375 2.3 105.8 1.0
FE6 B:FS2601 2.7 137.7 1.0
CB B:CYS375 3.0 90.2 1.0
FE8 B:FS2601 3.3 134.0 1.0
FE7 B:FS2601 3.6 80.2 1.0
O8 B:FS2601 3.6 122.9 1.0
N B:CYS375 3.8 81.8 1.0
CG B:GLU217 3.9 84.7 1.0
O9 B:FS2601 4.0 104.2 1.0
CA B:CYS375 4.0 91.0 1.0
CD1 B:TRP241 4.2 88.3 1.0
CD B:GLU217 4.4 86.5 1.0
NE2 B:HIS193 4.4 92.8 1.0
CE1 B:HIS193 4.5 89.8 1.0
SG B:CYS261 4.5 113.6 1.0
OE2 B:GLU217 4.7 85.6 1.0
SD B:CSS347 4.7 133.6 1.0
CA B:CSS347 4.8 91.9 1.0
C B:ALA374 4.9 81.6 1.0
CB B:ALA374 4.9 74.7 1.0
NE1 B:TRP241 4.9 85.2 1.0

Iron binding site 6 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 6 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:137.7
occ:1.00
 FE6 B:FS2601 0.0 137.7 1.0
SG B:CYS261 1.8 113.6 1.0
O8 B:FS2601 2.1 122.9 1.0
S5 B:FS2601 2.2 128.9 1.0
S6 B:FS2601 2.3 106.6 1.0
FE5 B:FS2601 2.7 141.4 1.0
CB B:CYS261 2.9 99.7 1.0
FE8 B:FS2601 3.1 134.0 1.0
O1 B:FS2601 3.2 97.7 1.0
CD1 B:TRP241 3.8 88.3 1.0
CE1 B:HIS193 4.1 89.8 1.0
CG B:TRP241 4.2 87.1 1.0
NE1 B:TRP241 4.3 85.2 1.0
CA B:CYS261 4.3 95.5 1.0
NZ B:LYS436 4.3 98.4 1.0
O9 B:FS2601 4.3 104.2 1.0
SG B:CYS375 4.4 105.8 1.0
CD B:LYS436 4.5 98.9 1.0
N B:CYS261 4.6 104.1 1.0
CB B:TRP241 4.7 83.9 1.0
NE2 B:HIS193 4.7 92.8 1.0
FE7 B:FS2601 4.8 80.2 1.0
CD2 B:TRP241 4.8 87.0 1.0
CE2 B:TRP241 4.8 86.8 1.0
C B:ASN260 4.9 92.1 1.0
O B:ASN260 5.0 84.9 1.0
SD B:CSS347 5.0 133.6 1.0

Iron binding site 7 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 7 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:80.2
occ:1.00
 FE7 B:FS2601 0.0 80.2 1.0
OE2 B:GLU217 2.0 85.6 1.0
NE2 B:HIS193 2.0 92.8 1.0
O9 B:FS2601 2.1 104.2 1.0
O1 B:FS2601 2.2 97.7 1.0
SG B:CYS400 2.2 79.1 1.0
CD B:GLU217 2.8 86.5 1.0
CD2 B:HIS193 2.9 83.3 1.0
CG B:GLU217 3.1 84.7 1.0
CB B:CYS400 3.1 88.8 1.0
CE1 B:HIS193 3.1 89.8 1.0
FE8 B:FS2601 3.5 134.0 1.0
FE5 B:FS2601 3.6 141.4 1.0
N B:CYS400 3.8 96.5 1.0
OE1 B:GLU217 3.8 82.7 1.0
O8 B:FS2601 3.9 122.9 1.0
CA B:CYS400 4.1 84.0 1.0
CG B:HIS193 4.1 83.6 1.0
ND1 B:HIS193 4.1 87.5 1.0
CB B:GLU217 4.2 67.1 1.0
S5 B:FS2601 4.3 128.9 1.0
CB B:ALA374 4.3 74.7 1.0
CA B:ALA374 4.5 70.1 1.0
SD B:CSS347 4.5 133.6 1.0
FE6 B:FS2601 4.8 137.7 1.0
S6 B:FS2601 4.9 106.6 1.0
C B:GLN399 5.0 93.7 1.0
N B:CYS375 5.0 81.8 1.0

Iron binding site 8 out of 8 in 7wsx

Go back to Iron Binding Sites List in 7wsx
Iron binding site 8 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:134.0
occ:1.00
 FE8 B:FS2601 0.0 134.0 1.0
O9 B:FS2601 1.9 104.2 1.0
SD B:CSS347 2.0 133.6 1.0
O1 B:FS2601 2.2 97.7 1.0
O8 B:FS2601 2.3 122.9 1.0
S6 B:FS2601 2.4 106.6 1.0
FE6 B:FS2601 3.1 137.7 1.0
FE5 B:FS2601 3.3 141.4 1.0
FE7 B:FS2601 3.5 80.2 1.0
SG B:CSS347 3.7 146.7 1.0
CB B:CSS347 3.9 101.8 1.0
NE2 B:HIS193 4.3 92.8 1.0
S5 B:FS2601 4.3 128.9 1.0
CB B:LYS436 4.4 104.4 1.0
SG B:CYS261 4.5 113.6 1.0
CE1 B:HIS193 4.5 89.8 1.0
CA B:CSS347 4.5 91.9 1.0
CD B:LYS436 4.5 98.9 1.0
O B:HOH702 4.7 75.5 1.0
SG B:CYS400 4.7 79.1 1.0
SG B:CYS375 4.8 105.8 1.0

Reference:

T.Fujishiro, T.Fujishiro. N/A N/A.
Page generated: Fri Aug 9 10:29:55 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy