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Iron in PDB 7wsx: Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis

Enzymatic activity of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis

All present enzymatic activity of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis:
1.7.99.1;

Protein crystallography data

The structure of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis, PDB code: 7wsx was solved by T.Fujishiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.93, 70.56, 106.34, 90, 106.85, 90
R / Rfree (%) 21 / 25.6

Iron Binding Sites:

The binding sites of Iron atom in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis (pdb code 7wsx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis, PDB code: 7wsx:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 7wsx

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Iron binding site 1 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:121.2
occ:1.00
 FE5 A:FS2601 0.0 121.2 1.0
O1 A:FS2601 1.7 75.0 1.0
SG A:CYS375 2.2 83.3 1.0
S5 A:FS2601 2.3 78.9 1.0
S6 A:FS2601 2.3 87.3 1.0
CB A:CYS375 2.6 72.0 1.0
FE6 A:FS2601 2.7 96.3 1.0
FE8 A:FS2601 3.3 125.9 1.0
CG A:GLU217 3.5 61.3 1.0
FE7 A:FS2601 3.6 74.0 1.0
O8 A:FS2601 3.6 84.9 1.0
CA A:CYS375 3.7 59.7 1.0
CD1 A:TRP241 3.7 66.6 1.0
N A:CYS375 3.8 58.0 1.0
O9 A:FS2601 3.9 92.7 1.0
CD A:GLU217 4.2 61.6 1.0
NE1 A:TRP241 4.5 64.9 1.0
CG A:TRP241 4.6 69.3 1.0
OE2 A:GLU217 4.6 69.2 1.0
CE1 A:HIS193 4.6 59.4 1.0
SG A:CYS261 4.7 88.8 1.0
NE2 A:HIS193 4.8 57.2 1.0
CB A:GLU217 4.8 54.5 1.0
OE1 A:GLU217 4.8 52.2 1.0
C A:ALA374 4.8 65.9 1.0
CB A:TRP241 4.8 64.9 1.0
CA A:CSS347 5.0 71.2 1.0
C A:CYS375 5.0 64.8 1.0

Iron binding site 2 out of 8 in 7wsx

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Iron binding site 2 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:96.3
occ:1.00
 FE6 A:FS2601 0.0 96.3 1.0
O8 A:FS2601 2.1 84.9 1.0
SG A:CYS261 2.1 88.8 1.0
S5 A:FS2601 2.2 78.9 1.0
S6 A:FS2601 2.3 87.3 1.0
FE5 A:FS2601 2.7 121.2 1.0
CB A:CYS261 3.0 68.4 1.0
FE8 A:FS2601 3.1 125.9 1.0
O1 A:FS2601 3.1 75.0 1.0
CD1 A:TRP241 3.6 66.6 1.0
NE1 A:TRP241 4.0 64.9 1.0
CG A:TRP241 4.0 69.3 1.0
CE1 A:HIS193 4.1 59.4 1.0
SD A:CSS347 4.1 118.1 1.0
O9 A:FS2601 4.3 92.7 1.0
CA A:CYS261 4.3 66.4 1.0
SG A:CYS375 4.5 83.3 1.0
CB A:TRP241 4.5 64.9 1.0
CE2 A:TRP241 4.5 68.5 1.0
FE7 A:FS2601 4.6 74.0 1.0
CD2 A:TRP241 4.6 67.8 1.0
CD A:LYS436 4.7 71.1 1.0
N A:CYS261 4.7 67.5 1.0
NE2 A:HIS193 4.8 57.2 1.0
C A:ASN260 5.0 59.3 1.0
NZ A:LYS436 5.0 68.0 1.0

Iron binding site 3 out of 8 in 7wsx

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Iron binding site 3 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:74.0
occ:1.00
 FE7 A:FS2601 0.0 74.0 1.0
OE2 A:GLU217 1.7 69.2 1.0
O9 A:FS2601 2.1 92.7 1.0
NE2 A:HIS193 2.1 57.2 1.0
O1 A:FS2601 2.2 75.0 1.0
SG A:CYS400 2.4 63.0 1.0
CD A:GLU217 2.4 61.6 1.0
CG A:GLU217 2.7 61.3 1.0
CE1 A:HIS193 3.0 59.4 1.0
CD2 A:HIS193 3.2 60.5 1.0
CB A:CYS400 3.3 66.5 1.0
FE8 A:FS2601 3.5 125.9 1.0
OE1 A:GLU217 3.5 52.2 1.0
O8 A:FS2601 3.5 84.9 1.0
FE5 A:FS2601 3.6 121.2 1.0
N A:CYS400 3.7 59.1 1.0
CB A:GLU217 3.8 54.5 1.0
S5 A:FS2601 4.1 78.9 1.0
CA A:CYS400 4.1 60.7 1.0
ND1 A:HIS193 4.1 61.3 1.0
CG A:HIS193 4.2 59.0 1.0
CB A:ALA374 4.3 55.3 1.0
CA A:ALA374 4.4 62.6 1.0
FE6 A:FS2601 4.6 96.3 1.0
SD A:CSS347 4.6 118.1 1.0
N A:CYS375 4.7 58.0 1.0
CB A:GLN399 4.8 67.2 1.0
C A:GLN399 4.9 65.0 1.0
S6 A:FS2601 4.9 87.3 1.0
C A:ALA374 5.0 65.9 1.0

Iron binding site 4 out of 8 in 7wsx

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Iron binding site 4 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:125.9
occ:1.00
 FE8 A:FS2601 0.0 125.9 1.0
SD A:CSS347 1.9 118.1 1.0
O9 A:FS2601 1.9 92.7 1.0
O1 A:FS2601 2.2 75.0 1.0
O8 A:FS2601 2.3 84.9 1.0
S6 A:FS2601 2.4 87.3 1.0
SG A:CSS347 2.5 71.2 1.0
CB A:CSS347 2.9 74.1 1.0
FE6 A:FS2601 3.1 96.3 1.0
FE5 A:FS2601 3.3 121.2 1.0
CA A:CSS347 3.4 71.2 1.0
FE7 A:FS2601 3.5 74.0 1.0
N A:CSS347 4.2 61.6 1.0
S5 A:FS2601 4.4 78.9 1.0
SG A:CYS400 4.6 63.0 1.0
C A:CSS347 4.6 71.0 1.0
NE2 A:HIS193 4.7 57.2 1.0
SG A:CYS261 4.7 88.8 1.0
CB A:CYS400 4.8 66.5 1.0
CE1 A:HIS193 4.8 59.4 1.0
N A:ASP348 4.8 69.7 1.0
CD A:LYS436 4.9 71.1 1.0
CB A:CYS375 4.9 72.0 1.0
CB A:ALA374 4.9 55.3 1.0
CB A:LYS436 5.0 77.3 1.0

Iron binding site 5 out of 8 in 7wsx

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Iron binding site 5 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:141.4
occ:1.00
 FE5 B:FS2601 0.0 141.4 1.0
O1 B:FS2601 1.7 97.7 1.0
S5 B:FS2601 2.3 128.9 1.0
S6 B:FS2601 2.3 106.6 1.0
SG B:CYS375 2.3 105.8 1.0
FE6 B:FS2601 2.7 137.7 1.0
CB B:CYS375 3.0 90.2 1.0
FE8 B:FS2601 3.3 134.0 1.0
FE7 B:FS2601 3.6 80.2 1.0
O8 B:FS2601 3.6 122.9 1.0
N B:CYS375 3.8 81.8 1.0
CG B:GLU217 3.9 84.7 1.0
O9 B:FS2601 4.0 104.2 1.0
CA B:CYS375 4.0 91.0 1.0
CD1 B:TRP241 4.2 88.3 1.0
CD B:GLU217 4.4 86.5 1.0
NE2 B:HIS193 4.4 92.8 1.0
CE1 B:HIS193 4.5 89.8 1.0
SG B:CYS261 4.5 113.6 1.0
OE2 B:GLU217 4.7 85.6 1.0
SD B:CSS347 4.7 133.6 1.0
CA B:CSS347 4.8 91.9 1.0
C B:ALA374 4.9 81.6 1.0
CB B:ALA374 4.9 74.7 1.0
NE1 B:TRP241 4.9 85.2 1.0

Iron binding site 6 out of 8 in 7wsx

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Iron binding site 6 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:137.7
occ:1.00
 FE6 B:FS2601 0.0 137.7 1.0
SG B:CYS261 1.8 113.6 1.0
O8 B:FS2601 2.1 122.9 1.0
S5 B:FS2601 2.2 128.9 1.0
S6 B:FS2601 2.3 106.6 1.0
FE5 B:FS2601 2.7 141.4 1.0
CB B:CYS261 2.9 99.7 1.0
FE8 B:FS2601 3.1 134.0 1.0
O1 B:FS2601 3.2 97.7 1.0
CD1 B:TRP241 3.8 88.3 1.0
CE1 B:HIS193 4.1 89.8 1.0
CG B:TRP241 4.2 87.1 1.0
NE1 B:TRP241 4.3 85.2 1.0
CA B:CYS261 4.3 95.5 1.0
NZ B:LYS436 4.3 98.4 1.0
O9 B:FS2601 4.3 104.2 1.0
SG B:CYS375 4.4 105.8 1.0
CD B:LYS436 4.5 98.9 1.0
N B:CYS261 4.6 104.1 1.0
CB B:TRP241 4.7 83.9 1.0
NE2 B:HIS193 4.7 92.8 1.0
FE7 B:FS2601 4.8 80.2 1.0
CD2 B:TRP241 4.8 87.0 1.0
CE2 B:TRP241 4.8 86.8 1.0
C B:ASN260 4.9 92.1 1.0
O B:ASN260 5.0 84.9 1.0
SD B:CSS347 5.0 133.6 1.0

Iron binding site 7 out of 8 in 7wsx

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Iron binding site 7 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:80.2
occ:1.00
 FE7 B:FS2601 0.0 80.2 1.0
OE2 B:GLU217 2.0 85.6 1.0
NE2 B:HIS193 2.0 92.8 1.0
O9 B:FS2601 2.1 104.2 1.0
O1 B:FS2601 2.2 97.7 1.0
SG B:CYS400 2.2 79.1 1.0
CD B:GLU217 2.8 86.5 1.0
CD2 B:HIS193 2.9 83.3 1.0
CG B:GLU217 3.1 84.7 1.0
CB B:CYS400 3.1 88.8 1.0
CE1 B:HIS193 3.1 89.8 1.0
FE8 B:FS2601 3.5 134.0 1.0
FE5 B:FS2601 3.6 141.4 1.0
N B:CYS400 3.8 96.5 1.0
OE1 B:GLU217 3.8 82.7 1.0
O8 B:FS2601 3.9 122.9 1.0
CA B:CYS400 4.1 84.0 1.0
CG B:HIS193 4.1 83.6 1.0
ND1 B:HIS193 4.1 87.5 1.0
CB B:GLU217 4.2 67.1 1.0
S5 B:FS2601 4.3 128.9 1.0
CB B:ALA374 4.3 74.7 1.0
CA B:ALA374 4.5 70.1 1.0
SD B:CSS347 4.5 133.6 1.0
FE6 B:FS2601 4.8 137.7 1.0
S6 B:FS2601 4.9 106.6 1.0
C B:GLN399 5.0 93.7 1.0
N B:CYS375 5.0 81.8 1.0

Iron binding site 8 out of 8 in 7wsx

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Iron binding site 8 out of 8 in the Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Class III Hybrid Cluster Protein (Hcp) C67Y Variant From Methanothermobacter Marburgensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:134.0
occ:1.00
 FE8 B:FS2601 0.0 134.0 1.0
O9 B:FS2601 1.9 104.2 1.0
SD B:CSS347 2.0 133.6 1.0
O1 B:FS2601 2.2 97.7 1.0
O8 B:FS2601 2.3 122.9 1.0
S6 B:FS2601 2.4 106.6 1.0
FE6 B:FS2601 3.1 137.7 1.0
FE5 B:FS2601 3.3 141.4 1.0
FE7 B:FS2601 3.5 80.2 1.0
SG B:CSS347 3.7 146.7 1.0
CB B:CSS347 3.9 101.8 1.0
NE2 B:HIS193 4.3 92.8 1.0
S5 B:FS2601 4.3 128.9 1.0
CB B:LYS436 4.4 104.4 1.0
SG B:CYS261 4.5 113.6 1.0
CE1 B:HIS193 4.5 89.8 1.0
CA B:CSS347 4.5 91.9 1.0
CD B:LYS436 4.5 98.9 1.0
O B:HOH702 4.7 75.5 1.0
SG B:CYS400 4.7 79.1 1.0
SG B:CYS375 4.8 105.8 1.0

Reference:

T.Fujishiro, T.Fujishiro. N/A N/A.
Page generated: Fri Aug 9 10:29:55 2024

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