Iron in PDB 7x2q: Salvia Miltiorrhiza CYP76AH3
Enzymatic activity of Salvia Miltiorrhiza CYP76AH3
Protein crystallography data
The structure of Salvia Miltiorrhiza CYP76AH3, PDB code: 7x2q
was solved by
Z.Chang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.23 /
3.68
|
Space group
|
P 63 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
151.1,
151.1,
156.91,
90,
90,
120
|
R / Rfree (%)
|
25.1 /
29.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Salvia Miltiorrhiza CYP76AH3
(pdb code 7x2q). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Salvia Miltiorrhiza CYP76AH3, PDB code: 7x2q:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7x2q
Go back to
Iron Binding Sites List in 7x2q
Iron binding site 1 out
of 2 in the Salvia Miltiorrhiza CYP76AH3
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Salvia Miltiorrhiza CYP76AH3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:80.0
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
80.0
|
1.0
|
NC
|
A:HEM501
|
2.0
|
64.5
|
1.0
|
NB
|
A:HEM501
|
2.0
|
57.0
|
1.0
|
ND
|
A:HEM501
|
2.1
|
55.8
|
1.0
|
NA
|
A:HEM501
|
2.1
|
77.0
|
1.0
|
O
|
A:HOH609
|
2.3
|
66.4
|
1.0
|
SG
|
A:CYS437
|
2.9
|
63.1
|
1.0
|
C4C
|
A:HEM501
|
3.0
|
59.8
|
1.0
|
C1B
|
A:HEM501
|
3.0
|
60.0
|
1.0
|
C1D
|
A:HEM501
|
3.0
|
53.9
|
1.0
|
C4A
|
A:HEM501
|
3.0
|
66.7
|
1.0
|
C1C
|
A:HEM501
|
3.1
|
61.6
|
1.0
|
C4B
|
A:HEM501
|
3.1
|
67.2
|
1.0
|
C4D
|
A:HEM501
|
3.1
|
55.3
|
1.0
|
C1A
|
A:HEM501
|
3.1
|
71.7
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
52.7
|
1.0
|
CHB
|
A:HEM501
|
3.4
|
63.8
|
1.0
|
CHC
|
A:HEM501
|
3.4
|
61.0
|
1.0
|
CHA
|
A:HEM501
|
3.5
|
69.0
|
1.0
|
CB
|
A:CYS437
|
4.0
|
64.4
|
1.0
|
C3C
|
A:HEM501
|
4.2
|
52.2
|
1.0
|
C2B
|
A:HEM501
|
4.3
|
59.1
|
1.0
|
C2C
|
A:HEM501
|
4.3
|
53.8
|
1.0
|
C2D
|
A:HEM501
|
4.3
|
47.1
|
1.0
|
C3A
|
A:HEM501
|
4.3
|
47.2
|
1.0
|
C3B
|
A:HEM501
|
4.3
|
62.1
|
1.0
|
C3D
|
A:HEM501
|
4.3
|
51.0
|
1.0
|
C2A
|
A:HEM501
|
4.3
|
50.4
|
1.0
|
O
|
A:GLY298
|
4.4
|
87.9
|
1.0
|
CA
|
A:CYS437
|
4.6
|
63.4
|
1.0
|
CD
|
A:PRO438
|
5.0
|
54.5
|
1.0
|
|
Iron binding site 2 out
of 2 in 7x2q
Go back to
Iron Binding Sites List in 7x2q
Iron binding site 2 out
of 2 in the Salvia Miltiorrhiza CYP76AH3
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Salvia Miltiorrhiza CYP76AH3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:63.7
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
63.7
|
1.0
|
NA
|
B:HEM501
|
2.0
|
74.8
|
1.0
|
NB
|
B:HEM501
|
2.1
|
56.6
|
1.0
|
ND
|
B:HEM501
|
2.1
|
54.6
|
1.0
|
NC
|
B:HEM501
|
2.1
|
73.8
|
1.0
|
SG
|
B:CYS437
|
2.8
|
39.2
|
1.0
|
C4A
|
B:HEM501
|
3.0
|
71.5
|
1.0
|
C1B
|
B:HEM501
|
3.0
|
61.2
|
1.0
|
C4C
|
B:HEM501
|
3.0
|
62.2
|
1.0
|
C1D
|
B:HEM501
|
3.1
|
54.4
|
1.0
|
C1C
|
B:HEM501
|
3.1
|
63.9
|
1.0
|
C1A
|
B:HEM501
|
3.1
|
65.0
|
1.0
|
C4D
|
B:HEM501
|
3.1
|
55.1
|
1.0
|
C4B
|
B:HEM501
|
3.1
|
58.3
|
1.0
|
CHB
|
B:HEM501
|
3.4
|
64.9
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
56.2
|
1.0
|
CHC
|
B:HEM501
|
3.5
|
65.9
|
1.0
|
CHA
|
B:HEM501
|
3.5
|
66.0
|
1.0
|
CB
|
B:CYS437
|
3.9
|
43.9
|
1.0
|
C3A
|
B:HEM501
|
4.3
|
70.6
|
1.0
|
C3C
|
B:HEM501
|
4.3
|
46.9
|
1.0
|
C2A
|
B:HEM501
|
4.3
|
66.6
|
1.0
|
C2B
|
B:HEM501
|
4.3
|
57.5
|
1.0
|
C2C
|
B:HEM501
|
4.3
|
42.6
|
1.0
|
C2D
|
B:HEM501
|
4.3
|
50.1
|
1.0
|
C3D
|
B:HEM501
|
4.3
|
50.7
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
51.8
|
1.0
|
O
|
B:GLY298
|
4.3
|
67.5
|
1.0
|
CA
|
B:CYS437
|
4.5
|
41.3
|
1.0
|
|
Reference:
Z.Chang,
Z.Chang.
N/A N/A.
Page generated: Fri Aug 9 10:35:24 2024
|