Iron in PDB 7x9w: Sulfur Oxygenase Reductase From Acidianus Ambivalens

All present enzymatic activity of Sulfur Oxygenase Reductase From Acidianus Ambivalens:
1.13.11.55;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Sulfur Oxygenase Reductase From Acidianus Ambivalens (pdb code 7x9w). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Sulfur Oxygenase Reductase From Acidianus Ambivalens, PDB code: 7x9w:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:77.7 occ:1.00 O A:HOH501 2.2 29.2 1.0 OE2 A:GLU114 2.3 21.6 1.0 CE1 A:HIS90 2.3 36.0 1.0 OE1 A:GLU114 2.3 21.6 1.0 NE2 A:HIS86 2.4 35.7 1.0 CD A:GLU114 2.5 21.6 1.0 ND1 A:HIS90 2.8 36.0 1.0 CD2 A:HIS86 3.2 35.7 1.0 CE1 A:HIS86 3.5 35.7 1.0 NE2 A:HIS90 3.6 36.0 1.0 CG A:GLU114 3.9 21.6 1.0 O A:HOH502 4.0 11.0 1.0 CG A:HIS90 4.1 36.0 1.0 CG A:HIS86 4.4 35.7 1.0 CD2 A:HIS90 4.5 36.0 1.0 CA A:GLY208 4.5 23.1 1.0 ND1 A:HIS86 4.5 35.7 1.0 CB A:ALA7 4.9 21.9 1.0 CB A:GLU114 4.9 21.6 1.0

Iron binding site 2 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:77.7 occ:1.00 O B:HOH501 2.2 29.2 1.0 OE2 B:GLU114 2.3 21.6 1.0 CE1 B:HIS90 2.3 36.0 1.0 OE1 B:GLU114 2.3 21.6 1.0 NE2 B:HIS86 2.4 35.7 1.0 CD B:GLU114 2.5 21.6 1.0 ND1 B:HIS90 2.8 36.0 1.0 CD2 B:HIS86 3.2 35.7 1.0 CE1 B:HIS86 3.5 35.7 1.0 NE2 B:HIS90 3.6 36.0 1.0 CG B:GLU114 3.9 21.6 1.0 O B:HOH502 4.0 11.0 1.0 CG B:HIS90 4.1 36.0 1.0 CG B:HIS86 4.4 35.7 1.0 CD2 B:HIS90 4.5 36.0 1.0 CA B:GLY208 4.5 23.1 1.0 ND1 B:HIS86 4.5 35.7 1.0 CB B:ALA7 4.9 21.9 1.0 CB B:GLU114 4.9 21.6 1.0

Iron binding site 3 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:77.7 occ:1.00 O C:HOH501 2.2 29.2 1.0 OE2 C:GLU114 2.3 21.6 1.0 CE1 C:HIS90 2.3 36.0 1.0 OE1 C:GLU114 2.3 21.6 1.0 NE2 C:HIS86 2.4 35.7 1.0 CD C:GLU114 2.5 21.6 1.0 ND1 C:HIS90 2.8 36.0 1.0 CD2 C:HIS86 3.2 35.7 1.0 CE1 C:HIS86 3.5 35.7 1.0 NE2 C:HIS90 3.6 36.0 1.0 CG C:GLU114 3.9 21.6 1.0 O C:HOH502 4.0 11.0 1.0 CG C:HIS90 4.1 36.0 1.0 CG C:HIS86 4.4 35.7 1.0 CD2 C:HIS90 4.5 36.0 1.0 CA C:GLY208 4.5 23.1 1.0 ND1 C:HIS86 4.5 35.7 1.0 CB C:ALA7 4.9 21.9 1.0 CB C:GLU114 4.9 21.6 1.0

Iron binding site 4 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:77.7 occ:1.00 O D:HOH501 2.2 29.2 1.0 OE2 D:GLU114 2.3 21.6 1.0 CE1 D:HIS90 2.3 36.0 1.0 OE1 D:GLU114 2.3 21.6 1.0 NE2 D:HIS86 2.4 35.7 1.0 CD D:GLU114 2.5 21.6 1.0 ND1 D:HIS90 2.8 36.0 1.0 CD2 D:HIS86 3.2 35.7 1.0 CE1 D:HIS86 3.5 35.7 1.0 NE2 D:HIS90 3.6 36.0 1.0 CG D:GLU114 3.9 21.6 1.0 O D:HOH502 4.0 11.0 1.0 CG D:HIS90 4.1 36.0 1.0 CG D:HIS86 4.4 35.7 1.0 CD2 D:HIS90 4.5 36.0 1.0 CA D:GLY208 4.5 23.1 1.0 ND1 D:HIS86 4.5 35.7 1.0 CB D:ALA7 4.9 21.9 1.0 CB D:GLU114 4.9 21.6 1.0

Iron binding site 5 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe401 b:77.7 occ:1.00 O E:HOH501 2.2 29.2 1.0 OE2 E:GLU114 2.3 21.6 1.0 CE1 E:HIS90 2.3 36.0 1.0 OE1 E:GLU114 2.3 21.6 1.0 NE2 E:HIS86 2.4 35.7 1.0 CD E:GLU114 2.5 21.6 1.0 ND1 E:HIS90 2.8 36.0 1.0 CD2 E:HIS86 3.2 35.7 1.0 CE1 E:HIS86 3.5 35.7 1.0 NE2 E:HIS90 3.6 36.0 1.0 CG E:GLU114 3.9 21.6 1.0 O E:HOH502 4.0 11.0 1.0 CG E:HIS90 4.1 36.0 1.0 CG E:HIS86 4.4 35.7 1.0 CD2 E:HIS90 4.5 36.0 1.0 CA E:GLY208 4.5 23.1 1.0 ND1 E:HIS86 4.5 35.7 1.0 CB E:ALA7 4.9 21.9 1.0 CB E:GLU114 4.9 21.6 1.0

Iron binding site 6 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe401 b:77.7 occ:1.00 O F:HOH501 2.2 29.2 1.0 OE2 F:GLU114 2.3 21.6 1.0 CE1 F:HIS90 2.3 36.0 1.0 OE1 F:GLU114 2.3 21.6 1.0 NE2 F:HIS86 2.4 35.7 1.0 CD F:GLU114 2.5 21.6 1.0 ND1 F:HIS90 2.8 36.0 1.0 CD2 F:HIS86 3.2 35.7 1.0 CE1 F:HIS86 3.5 35.7 1.0 NE2 F:HIS90 3.6 36.0 1.0 CG F:GLU114 3.9 21.6 1.0 O F:HOH502 4.0 11.0 1.0 CG F:HIS90 4.1 36.0 1.0 CG F:HIS86 4.4 35.7 1.0 CD2 F:HIS90 4.5 36.0 1.0 CA F:GLY208 4.5 23.1 1.0 ND1 F:HIS86 4.5 35.7 1.0 CB F:ALA7 4.9 21.9 1.0 CB F:GLU114 4.9 21.6 1.0

Iron binding site 7 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe401 b:77.7 occ:1.00 O G:HOH501 2.2 29.2 1.0 OE2 G:GLU114 2.3 21.6 1.0 CE1 G:HIS90 2.3 36.0 1.0 OE1 G:GLU114 2.3 21.6 1.0 NE2 G:HIS86 2.4 35.7 1.0 CD G:GLU114 2.5 21.6 1.0 ND1 G:HIS90 2.8 36.0 1.0 CD2 G:HIS86 3.2 35.7 1.0 CE1 G:HIS86 3.5 35.7 1.0 NE2 G:HIS90 3.6 36.0 1.0 CG G:GLU114 3.9 21.6 1.0 O G:HOH502 4.0 11.0 1.0 CG G:HIS90 4.1 36.0 1.0 CG G:HIS86 4.4 35.7 1.0 CD2 G:HIS90 4.5 36.0 1.0 CA G:GLY208 4.5 23.1 1.0 ND1 G:HIS86 4.5 35.7 1.0 CB G:ALA7 4.9 21.9 1.0 CB G:GLU114 4.9 21.6 1.0

Iron binding site 8 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:77.7 occ:1.00 O H:HOH501 2.2 29.2 1.0 OE2 H:GLU114 2.3 21.6 1.0 CE1 H:HIS90 2.3 36.0 1.0 OE1 H:GLU114 2.3 21.6 1.0 NE2 H:HIS86 2.4 35.7 1.0 CD H:GLU114 2.5 21.6 1.0 ND1 H:HIS90 2.8 36.0 1.0 CD2 H:HIS86 3.2 35.7 1.0 CE1 H:HIS86 3.5 35.7 1.0 NE2 H:HIS90 3.6 36.0 1.0 CG H:GLU114 3.9 21.6 1.0 O H:HOH502 4.0 11.0 1.0 CG H:HIS90 4.1 36.0 1.0 CG H:HIS86 4.4 35.7 1.0 CD2 H:HIS90 4.5 36.0 1.0 CA H:GLY208 4.5 23.1 1.0 ND1 H:HIS86 4.5 35.7 1.0 CB H:ALA7 4.9 21.9 1.0 CB H:GLU114 4.9 21.6 1.0

Iron binding site 9 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe401 b:77.7 occ:1.00 O I:HOH501 2.2 29.2 1.0 OE2 I:GLU114 2.3 21.6 1.0 CE1 I:HIS90 2.3 36.0 1.0 OE1 I:GLU114 2.3 21.6 1.0 NE2 I:HIS86 2.4 35.7 1.0 CD I:GLU114 2.5 21.6 1.0 ND1 I:HIS90 2.8 36.0 1.0 CD2 I:HIS86 3.2 35.7 1.0 CE1 I:HIS86 3.5 35.7 1.0 NE2 I:HIS90 3.6 36.0 1.0 CG I:GLU114 3.9 21.6 1.0 O I:HOH502 4.0 11.0 1.0 CG I:HIS90 4.1 36.0 1.0 CG I:HIS86 4.4 35.7 1.0 CD2 I:HIS90 4.5 36.0 1.0 CA I:GLY208 4.5 23.1 1.0 ND1 I:HIS86 4.5 35.7 1.0 CB I:ALA7 4.9 21.9 1.0 CB I:GLU114 4.9 21.6 1.0

Iron binding site 10 out of 24 in the Sulfur Oxygenase Reductase From Acidianus Ambivalens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Sulfur Oxygenase Reductase From Acidianus Ambivalens within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe401 b:77.7 occ:1.00 O J:HOH501 2.2 29.2 1.0 OE2 J:GLU114 2.3 21.6 1.0 CE1 J:HIS90 2.3 36.0 1.0 OE1 J:GLU114 2.3 21.6 1.0 NE2 J:HIS86 2.4 35.7 1.0 CD J:GLU114 2.5 21.6 1.0 ND1 J:HIS90 2.8 36.0 1.0 CD2 J:HIS86 3.2 35.7 1.0 CE1 J:HIS86 3.5 35.7 1.0 NE2 J:HIS90 3.6 36.0 1.0 CG J:GLU114 3.9 21.6 1.0 O J:HOH502 4.0 11.0 1.0 CG J:HIS90 4.1 36.0 1.0 CG J:HIS86 4.4 35.7 1.0 CD2 J:HIS90 4.5 36.0 1.0 CA J:GLY208 4.5 23.1 1.0 ND1 J:HIS86 4.5 35.7 1.0 CB J:ALA7 4.9 21.9 1.0 CB J:GLU114 4.9 21.6 1.0

M.A.Sobhy, L.Zhao, D.Anjum, A.Behzad, M.Takahashi, M.Tehseen, A.Biasio, R.Sougrat, S.Hamdan. Cryo-Electron Structures of the Extreme Thermostable Enzymes Sulfur Oxygenase Reductase and Lumazine Synthase. Plos One V. 17 75487 2022.
ISSN: ESSN 1932-6203
PubMed: 36191023
DOI: 10.1371/JOURNAL.PONE.0275487