Iron in PDB 7xgy: Cryo-Em Structure of Hemoglobin
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Hemoglobin
(pdb code 7xgy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Cryo-Em Structure of Hemoglobin, PDB code: 7xgy:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7xgy
Go back to
Iron Binding Sites List in 7xgy
Iron binding site 1 out
of 4 in the Cryo-Em Structure of Hemoglobin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Hemoglobin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:63.2
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
63.2
|
1.0
|
|
ND
|
A:HEM201
|
2.0
|
63.2
|
1.0
|
|
NB
|
A:HEM201
|
2.0
|
63.2
|
1.0
|
|
NC
|
A:HEM201
|
2.0
|
63.2
|
1.0
|
|
NA
|
A:HEM201
|
2.0
|
63.2
|
1.0
|
|
NE2
|
A:HIS87
|
2.8
|
65.2
|
1.0
|
|
C1D
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
C1B
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
C1C
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
CE1
|
A:HIS87
|
3.0
|
65.2
|
1.0
|
|
C4C
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
C4A
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
C4D
|
A:HEM201
|
3.0
|
63.2
|
1.0
|
|
C4B
|
A:HEM201
|
3.1
|
63.2
|
1.0
|
|
C1A
|
A:HEM201
|
3.1
|
63.2
|
1.0
|
|
CHB
|
A:HEM201
|
3.4
|
63.2
|
1.0
|
|
CHD
|
A:HEM201
|
3.4
|
63.2
|
1.0
|
|
CHC
|
A:HEM201
|
3.4
|
63.2
|
1.0
|
|
CHA
|
A:HEM201
|
3.5
|
63.2
|
1.0
|
|
CG2
|
A:VAL62
|
3.9
|
59.7
|
1.0
|
|
CE1
|
A:HIS58
|
4.1
|
60.0
|
1.0
|
|
CD2
|
A:HIS87
|
4.1
|
65.2
|
1.0
|
|
C2C
|
A:HEM201
|
4.2
|
63.2
|
1.0
|
|
C2D
|
A:HEM201
|
4.2
|
63.2
|
1.0
|
|
C3C
|
A:HEM201
|
4.2
|
63.2
|
1.0
|
|
C2B
|
A:HEM201
|
4.2
|
63.2
|
1.0
|
|
C3D
|
A:HEM201
|
4.2
|
63.2
|
1.0
|
|
C3A
|
A:HEM201
|
4.3
|
63.2
|
1.0
|
|
C3B
|
A:HEM201
|
4.3
|
63.2
|
1.0
|
|
ND1
|
A:HIS87
|
4.3
|
65.2
|
1.0
|
|
C2A
|
A:HEM201
|
4.3
|
63.2
|
1.0
|
|
NE2
|
A:HIS58
|
4.3
|
60.0
|
1.0
|
|
CG
|
A:HIS87
|
4.8
|
65.2
|
1.0
|
|
CG1
|
A:VAL62
|
4.9
|
59.7
|
1.0
|
|
Iron binding site 2 out
of 4 in 7xgy
Go back to
Iron Binding Sites List in 7xgy
Iron binding site 2 out
of 4 in the Cryo-Em Structure of Hemoglobin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Hemoglobin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:47.9
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
47.9
|
1.0
|
|
ND
|
B:HEM201
|
2.0
|
47.9
|
1.0
|
|
NC
|
B:HEM201
|
2.0
|
47.9
|
1.0
|
|
NB
|
B:HEM201
|
2.0
|
47.9
|
1.0
|
|
NA
|
B:HEM201
|
2.0
|
47.9
|
1.0
|
|
NE2
|
B:HIS92
|
2.8
|
49.1
|
1.0
|
|
C4A
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C1D
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C1B
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C4C
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C1A
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C1C
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C4D
|
B:HEM201
|
3.0
|
47.9
|
1.0
|
|
C4B
|
B:HEM201
|
3.1
|
47.9
|
1.0
|
|
CHD
|
B:HEM201
|
3.3
|
47.9
|
1.0
|
|
CHB
|
B:HEM201
|
3.3
|
47.9
|
1.0
|
|
CHC
|
B:HEM201
|
3.4
|
47.9
|
1.0
|
|
CHA
|
B:HEM201
|
3.4
|
47.9
|
1.0
|
|
CE1
|
B:HIS63
|
3.4
|
61.1
|
1.0
|
|
CE1
|
B:HIS92
|
3.4
|
49.1
|
1.0
|
|
NE2
|
B:HIS63
|
3.6
|
61.1
|
1.0
|
|
CD2
|
B:HIS92
|
3.9
|
49.1
|
1.0
|
|
C3A
|
B:HEM201
|
4.1
|
47.9
|
1.0
|
|
C2A
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C2D
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C2B
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C2C
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C3C
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C3D
|
B:HEM201
|
4.2
|
47.9
|
1.0
|
|
C3B
|
B:HEM201
|
4.3
|
47.9
|
1.0
|
|
CG2
|
B:VAL67
|
4.6
|
54.3
|
1.0
|
|
ND1
|
B:HIS92
|
4.6
|
49.1
|
1.0
|
|
ND1
|
B:HIS63
|
4.7
|
61.1
|
1.0
|
|
CZ
|
B:PHE42
|
4.8
|
61.5
|
1.0
|
|
CG
|
B:HIS92
|
4.9
|
49.1
|
1.0
|
|
CD2
|
B:HIS63
|
5.0
|
61.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 7xgy
Go back to
Iron Binding Sites List in 7xgy
Iron binding site 3 out
of 4 in the Cryo-Em Structure of Hemoglobin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Hemoglobin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:63.1
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
63.1
|
1.0
|
|
ND
|
C:HEM201
|
2.0
|
63.1
|
1.0
|
|
NB
|
C:HEM201
|
2.0
|
63.1
|
1.0
|
|
NC
|
C:HEM201
|
2.0
|
63.1
|
1.0
|
|
NA
|
C:HEM201
|
2.0
|
63.1
|
1.0
|
|
NE2
|
C:HIS87
|
2.8
|
67.0
|
1.0
|
|
C1D
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
C1B
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
C1C
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
CE1
|
C:HIS87
|
3.0
|
67.0
|
1.0
|
|
C4C
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
C4A
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
C4D
|
C:HEM201
|
3.0
|
63.1
|
1.0
|
|
C4B
|
C:HEM201
|
3.1
|
63.1
|
1.0
|
|
C1A
|
C:HEM201
|
3.1
|
63.1
|
1.0
|
|
CHB
|
C:HEM201
|
3.4
|
63.1
|
1.0
|
|
CHD
|
C:HEM201
|
3.4
|
63.1
|
1.0
|
|
CHC
|
C:HEM201
|
3.4
|
63.1
|
1.0
|
|
CHA
|
C:HEM201
|
3.5
|
63.1
|
1.0
|
|
CG2
|
C:VAL62
|
3.9
|
59.1
|
1.0
|
|
CE1
|
C:HIS58
|
4.1
|
59.3
|
1.0
|
|
CD2
|
C:HIS87
|
4.1
|
67.0
|
1.0
|
|
C2C
|
C:HEM201
|
4.2
|
63.1
|
1.0
|
|
C2D
|
C:HEM201
|
4.2
|
63.1
|
1.0
|
|
C3C
|
C:HEM201
|
4.2
|
63.1
|
1.0
|
|
C2B
|
C:HEM201
|
4.2
|
63.1
|
1.0
|
|
C3D
|
C:HEM201
|
4.2
|
63.1
|
1.0
|
|
C3A
|
C:HEM201
|
4.3
|
63.1
|
1.0
|
|
C3B
|
C:HEM201
|
4.3
|
63.1
|
1.0
|
|
ND1
|
C:HIS87
|
4.3
|
67.0
|
1.0
|
|
C2A
|
C:HEM201
|
4.3
|
63.1
|
1.0
|
|
NE2
|
C:HIS58
|
4.3
|
59.3
|
1.0
|
|
CG
|
C:HIS87
|
4.8
|
67.0
|
1.0
|
|
CG1
|
C:VAL62
|
4.9
|
59.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 7xgy
Go back to
Iron Binding Sites List in 7xgy
Iron binding site 4 out
of 4 in the Cryo-Em Structure of Hemoglobin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Hemoglobin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:47.1
occ:1.00
|
FE
|
D:HEM201
|
0.0
|
47.1
|
1.0
|
|
ND
|
D:HEM201
|
2.0
|
47.1
|
1.0
|
|
NC
|
D:HEM201
|
2.0
|
47.1
|
1.0
|
|
NB
|
D:HEM201
|
2.0
|
47.1
|
1.0
|
|
NA
|
D:HEM201
|
2.0
|
47.1
|
1.0
|
|
NE2
|
D:HIS92
|
2.8
|
48.4
|
1.0
|
|
C4A
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C1D
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C1B
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C4C
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C1A
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C1C
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C4D
|
D:HEM201
|
3.0
|
47.1
|
1.0
|
|
C4B
|
D:HEM201
|
3.1
|
47.1
|
1.0
|
|
CHD
|
D:HEM201
|
3.3
|
47.1
|
1.0
|
|
CHB
|
D:HEM201
|
3.3
|
47.1
|
1.0
|
|
CHC
|
D:HEM201
|
3.4
|
47.1
|
1.0
|
|
CHA
|
D:HEM201
|
3.4
|
47.1
|
1.0
|
|
CE1
|
D:HIS63
|
3.4
|
60.4
|
1.0
|
|
CE1
|
D:HIS92
|
3.4
|
48.4
|
1.0
|
|
NE2
|
D:HIS63
|
3.6
|
60.4
|
1.0
|
|
CD2
|
D:HIS92
|
3.9
|
48.4
|
1.0
|
|
C3A
|
D:HEM201
|
4.1
|
47.1
|
1.0
|
|
C2A
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C2D
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C2B
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C2C
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C3C
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C3D
|
D:HEM201
|
4.2
|
47.1
|
1.0
|
|
C3B
|
D:HEM201
|
4.3
|
47.1
|
1.0
|
|
CG2
|
D:VAL67
|
4.6
|
52.7
|
1.0
|
|
ND1
|
D:HIS92
|
4.6
|
48.4
|
1.0
|
|
ND1
|
D:HIS63
|
4.7
|
60.4
|
1.0
|
|
CZ
|
D:PHE42
|
4.8
|
61.3
|
1.0
|
|
CG
|
D:HIS92
|
4.9
|
48.4
|
1.0
|
|
CD2
|
D:HIS63
|
5.0
|
60.4
|
1.0
|
|
Reference:
N.Liu,
H.W.Wang.
Cryo-Em Structure of Hemoglobin To Be Published.
Page generated: Wed Apr 5 07:03:20 2023
|
