Iron in PDB 7xz4: Crystal Structure of Ferritin From Setaria Italica

All present enzymatic activity of Crystal Structure of Ferritin From Setaria Italica:
1.16.3.1;

The structure of Crystal Structure of Ferritin From Setaria Italica, PDB code: 7xz4 was solved by W.M.Wang, Y.Wang, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.58 / 2.20
Space group	I 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	150.336, 150.336, 150.336, 90, 90, 90
R / Rfree (%)	15.8 / 20.1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of Ferritin From Setaria Italica (pdb code 7xz4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Crystal Structure of Ferritin From Setaria Italica, PDB code: 7xz4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:99.5 occ:1.00 O A:HOH506 2.3 46.1 1.0 OE1 A:GLU92 3.2 63.6 0.5 NZ A:LYS99 3.3 24.8 0.5 CD A:LYS99 3.9 23.8 0.5 OE2 A:GLU95 4.0 78.6 1.0 CE A:LYS99 4.1 34.9 0.5 CD A:GLU92 4.2 67.2 0.5 CA A:LYS96 4.4 22.8 1.0 CB A:LYS96 4.4 21.7 1.0 N A:LYS96 4.4 22.6 1.0 CG A:GLU95 4.5 47.1 1.0 CG A:GLU92 4.5 47.6 0.5 O A:HOH512 4.7 47.2 1.0 CD A:GLU95 4.7 72.5 1.0 O A:GLU92 4.7 22.4 0.5 O A:GLU92 4.7 22.4 0.5 CE A:LYS96 4.8 35.9 1.0 CB A:GLU95 4.9 32.3 1.0 C A:GLU95 4.9 25.9 1.0

Iron binding site 2 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:49.3 occ:0.65 O A:HOH511 2.3 27.7 0.3 OD1 A:ASP163 2.6 28.4 1.0 CG A:ASP163 3.5 32.1 1.0 OD2 A:ASP163 3.6 32.1 1.0 FE A:FE306 3.9 116.0 1.0 CB A:SER167 4.0 26.3 1.0 O A:HOH476 4.2 34.9 0.3 OG A:SER167 4.6 43.7 1.0 CB A:ASP163 4.9 27.9 1.0

Iron binding site 3 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:55.2 occ:0.53 O A:HOH508 2.2 41.9 0.2 O A:HOH418 3.5 27.9 1.0 CB A:HIS194 3.8 17.8 1.0 ND1 A:HIS194 4.0 22.6 1.0 CG A:HIS194 4.2 23.7 1.0 N A:GLY195 4.3 22.6 1.0 O A:HOH452 4.5 32.8 1.0 CA A:HIS194 4.7 20.8 1.0 C A:HIS194 4.8 23.7 1.0 CA A:GLY195 4.9 22.4 1.0 O A:VAL190 5.0 28.5 1.0

Iron binding site 4 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe304 b:69.5 occ:0.59 O A:HOH444 2.3 33.9 1.0 NZ A:LYS202 2.8 51.7 1.0 CE A:LYS202 3.9 49.8 1.0 NE2 A:HIS198 4.4 23.4 1.0 CE1 A:HIS198 4.9 20.7 1.0

Iron binding site 5 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe305 b:85.6 occ:1.00 O1 A:PO4315 2.6 57.2 1.0 O A:HOH439 2.7 51.5 1.0 OE2 A:GLU45 2.8 34.5 1.0 O2 A:PO4315 3.4 39.5 1.0 NH2 A:ARG109 3.5 43.7 1.0 OE1 A:GLU45 3.5 35.0 1.0 CD A:GLU45 3.5 33.0 1.0 P A:PO4315 3.6 67.8 1.0 CD A:ARG107 3.6 49.4 1.0 NH1 A:ARG37 3.7 32.4 1.0 CG A:ARG107 3.8 29.8 1.0 NH1 A:ARG109 4.0 46.4 1.0 NE A:ARG107 4.1 38.7 1.0 CZ A:ARG109 4.2 47.2 1.0 CB A:ARG107 4.2 26.3 1.0 O3 A:PO4315 4.5 56.6 1.0 N A:ARG107 4.6 26.4 1.0 O4 A:PO4315 4.7 55.0 1.0 CZ A:ARG37 4.9 36.8 1.0

Iron binding site 6 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe306 b:116.0 occ:1.00 O A:HOH494 2.9 42.7 1.0 OD2 A:ASP163 3.2 32.1 1.0 OG A:SER167 3.5 43.7 1.0 FE A:FE302 3.9 49.3 0.7 CB A:SER167 4.0 26.3 1.0 CG A:ASP163 4.2 32.1 1.0 O A:HOH416 4.4 34.0 1.0 OD1 A:ASP163 4.5 28.4 1.0 OE2 A:GLU168 4.5 40.0 1.0 O A:HOH511 4.5 27.7 0.3

Iron binding site 7 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe307 b:109.4 occ:1.00 O A:HOH483 2.7 41.5 1.0 NE2 A:GLN201 4.0 24.1 1.0 OE1 A:GLN201 4.3 28.6 1.0 CD A:GLN201 4.5 31.6 1.0 CZ2 A:TRP197 4.9 21.8 1.0

Iron binding site 8 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe308 b:79.5 occ:1.00 OD1 A:ASN157 2.2 37.1 0.5 CG A:ASN157 3.2 35.7 0.5 ND2 A:ASN157 3.4 41.3 0.5 OD1 A:ASN157 4.2 37.1 0.5 CB A:ASN157 4.4 33.4 0.5 CB A:ASN157 4.6 32.9 0.5 CG A:ASN157 4.7 34.8 0.5 CG A:PRO159 4.8 22.9 1.0 CD A:PRO159 4.9 25.4 1.0 CB A:PRO159 4.9 27.0 1.0 CA A:ASN157 5.0 29.8 0.5 CA A:ASN157 5.0 29.9 0.5 O A:ASN157 5.0 34.4 0.5 O A:ASN157 5.0 34.4 0.5 O A:HOH460 5.0 42.8 1.0

Iron binding site 9 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe309 b:92.6 occ:1.00 OE1 A:GLU119 3.2 43.6 1.0 CB A:ASP121 3.4 45.3 1.0 OD2 A:ASP121 3.6 57.6 1.0 O A:HOH431 3.6 39.6 1.0 CG A:ASP121 4.0 67.3 1.0 CD A:GLU119 4.0 47.4 1.0 CB A:GLU119 4.2 41.7 1.0 O A:HOH481 4.2 56.0 1.0 CG A:GLU119 4.3 46.3 1.0 CA A:ASP121 4.8 45.0 1.0 N A:ASP121 4.9 37.9 1.0 NH1 A:ARG71 5.0 20.7 1.0 CE1 A:TYR68 5.0 23.6 1.0

Iron binding site 10 out of 14 in the Crystal Structure of Ferritin From Setaria Italica


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of Ferritin From Setaria Italica within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe310 b:97.5 occ:1.00 O A:HOH479 3.1 37.0 1.0 O A:HOH509 3.2 54.3 1.0 O A:HOH474 3.3 40.5 1.0 CA A:VAL41 4.2 24.5 1.0 CG1 A:VAL41 4.3 28.0 1.0 O A:PHE40 4.3 29.9 1.0 CB A:VAL41 4.6 28.9 1.0 C A:PHE40 4.8 26.8 1.0 O A:HOH489 4.8 56.7 1.0 N A:VAL41 4.9 28.0 1.0 NH2 A:ARG37 4.9 34.2 1.0 N A:ASP42 5.0 28.6 1.0

W.Wang, Y.Wang, H.Xi, Z.Song, W.Zhang, L.Xie, D.Ma, N.Qin, H.Wang. Extension Peptide of Plant Ferritin From Setaria Italica Presents A Novel Fold. J.Agric.Food Chem. V. 71 934 2023.
ISSN: ESSN 1520-5118
PubMed: 36576327
DOI: 10.1021/ACS.JAFC.2C07595