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Iron in PDB 7y3w: Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001

Protein crystallography data

The structure of Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001, PDB code: 7y3w was solved by X.D.Hou, K.Fu, Y.J.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.10 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.781, 99.618, 130.638, 90, 90, 90
R / Rfree (%) 15 / 18.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001 (pdb code 7y3w). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001, PDB code: 7y3w:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7y3w

Go back to Iron Binding Sites List in 7y3w
Iron binding site 1 out of 2 in the Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:14.1
occ:1.00
OQ1 A:KCX377 2.0 17.5 1.0
NE2 A:HIS158 2.1 12.1 1.0
NE2 A:HIS296 2.1 15.3 1.0
NE2 A:HIS55 2.1 16.6 1.0
O A:HOH855 2.1 14.8 1.0
NE2 A:HIS374 2.2 15.6 1.0
CE1 A:HIS158 3.0 13.6 1.0
CD2 A:HIS296 3.1 17.8 1.0
CE1 A:HIS55 3.1 15.9 1.0
CE1 A:HIS296 3.1 16.5 1.0
CD2 A:HIS55 3.1 15.7 1.0
CE1 A:HIS374 3.1 14.9 1.0
CD2 A:HIS374 3.1 14.9 1.0
CD2 A:HIS158 3.2 14.4 1.0
CX A:KCX377 3.2 24.8 1.0
OQ2 A:KCX377 3.8 25.1 1.0
NZ A:KCX377 4.1 24.7 1.0
ND1 A:HIS158 4.2 13.5 1.0
CG A:HIS296 4.2 14.9 1.0
ND1 A:HIS296 4.2 15.0 1.0
ND1 A:HIS55 4.2 15.3 1.0
CG A:HIS55 4.3 14.6 1.0
ND1 A:HIS374 4.3 14.3 1.0
CG A:HIS158 4.3 14.6 1.0
CG A:HIS374 4.3 15.3 1.0
O A:HOH931 4.4 20.0 1.0
O A:HOH709 4.5 17.6 1.0
CZ A:PHE292 4.9 17.8 1.0

Iron binding site 2 out of 2 in 7y3w

Go back to Iron Binding Sites List in 7y3w
Iron binding site 2 out of 2 in the Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of An Questin Oxidase (BTG13) From Cercospora Sp. JNU001 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:13.2
occ:1.00
OQ2 B:KCX377 2.0 16.8 1.0
NE2 B:HIS158 2.1 13.8 1.0
NE2 B:HIS55 2.1 14.8 1.0
NE2 B:HIS374 2.1 12.2 1.0
NE2 B:HIS296 2.2 12.9 1.0
O B:HOH875 2.2 11.7 1.0
CE1 B:HIS158 3.1 14.3 1.0
CD2 B:HIS55 3.1 14.9 1.0
CD2 B:HIS158 3.1 14.8 1.0
CE1 B:HIS55 3.1 15.0 1.0
CD2 B:HIS296 3.1 14.8 1.0
CD2 B:HIS374 3.1 13.5 1.0
CX B:KCX377 3.1 19.1 1.0
CE1 B:HIS374 3.2 12.5 1.0
CE1 B:HIS296 3.2 14.5 1.0
OQ1 B:KCX377 3.7 20.4 1.0
NZ B:KCX377 4.1 19.8 1.0
ND1 B:HIS158 4.2 14.2 1.0
CG B:HIS158 4.2 14.9 1.0
ND1 B:HIS55 4.2 14.0 1.0
CG B:HIS55 4.2 13.5 1.0
ND1 B:HIS374 4.3 13.2 1.0
CG B:HIS374 4.3 13.2 1.0
CG B:HIS296 4.3 14.1 1.0
ND1 B:HIS296 4.3 14.2 1.0
O B:HOH966 4.4 23.2 1.0
O B:HOH855 4.5 19.2 1.0
CZ B:PHE292 4.9 17.5 1.0

Reference:

X.Hou, H.Xu, Z.Deng, Y.Yan, Z.Yuan, X.Liu, Z.Su, S.Yang, Y.Zhang, Y.Rao. Discovery of the Biosynthetic Pathway of Beticolin 1 Reveals A Novel Non-Heme Iron-Dependent Oxygenase For Anthraquinone Ring Cleavage. Angew.Chem.Int.Ed.Engl. V. 61 08772 2022.
ISSN: ESSN 1521-3773
PubMed: 35862137
DOI: 10.1002/ANIE.202208772
Page generated: Fri Aug 9 11:15:28 2024

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