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Iron in PDB 7y5i: Crystal Structure of Cmnc in Complex with L-Homoarginine

Protein crystallography data

The structure of Crystal Structure of Cmnc in Complex with L-Homoarginine, PDB code: 7y5i was solved by Y.H.Hsiao, S.J.Huang, E.C.Lin, Y.C.Lee, C.Y.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 1.49
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.223, 127.172, 139.588, 90, 90, 90
R / Rfree (%) 19 / 20.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cmnc in Complex with L-Homoarginine (pdb code 7y5i). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cmnc in Complex with L-Homoarginine, PDB code: 7y5i:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7y5i

Go back to Iron Binding Sites List in 7y5i
Iron binding site 1 out of 2 in the Crystal Structure of Cmnc in Complex with L-Homoarginine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cmnc in Complex with L-Homoarginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:13.7
occ:1.00
OE1 A:GLU150 1.9 10.8 1.0
NE2 A:HIS295 2.0 12.7 1.0
NE2 A:HIS148 2.1 11.8 1.0
O4 A:TLA403 2.2 30.4 1.0
CE1 A:HIS295 2.8 13.1 1.0
CD A:GLU150 3.0 11.2 1.0
CD2 A:HIS295 3.0 12.6 1.0
CE1 A:HIS148 3.1 11.9 1.0
CD2 A:HIS148 3.1 11.6 1.0
C4 A:TLA403 3.4 29.9 1.0
OE2 A:GLU150 3.4 12.8 1.0
N A:ARG402 3.9 21.7 1.0
ND1 A:HIS295 3.9 12.4 1.0
O41 A:TLA403 4.0 34.6 1.0
CG A:HIS295 4.0 11.5 1.0
ND1 A:HIS148 4.2 11.5 1.0
CG A:HIS148 4.2 11.3 1.0
CG A:GLU150 4.3 9.8 1.0
CB A:GLU150 4.6 9.3 1.0
NH1 A:ARG313 4.6 18.9 1.0
C3 A:TLA403 4.7 25.9 1.0
CA A:GLU150 4.8 9.0 1.0
O2 A:TLA403 4.8 24.4 1.0
CB A:ARG402 4.8 20.1 1.0
CG A:ARG402 4.9 19.5 1.0
O A:HIS295 4.9 10.7 1.0
CD2 A:LEU145 4.9 13.0 1.0
O A:HOH655 4.9 19.2 1.0
CA A:ARG402 5.0 20.7 1.0

Iron binding site 2 out of 2 in 7y5i

Go back to Iron Binding Sites List in 7y5i
Iron binding site 2 out of 2 in the Crystal Structure of Cmnc in Complex with L-Homoarginine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cmnc in Complex with L-Homoarginine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:63.1
occ:1.00
O41 B:TLA402 2.6 29.4 1.0
OE1 B:GLU150 2.9 15.4 1.0
NE2 B:HIS148 2.9 23.0 1.0
CE1 B:HIS148 3.3 23.4 1.0
C4 B:TLA402 3.4 29.2 1.0
O4 B:TLA402 3.6 31.3 1.0
NE2 B:HIS295 3.6 16.4 1.0
CD B:GLU150 3.7 13.7 1.0
OE2 B:GLU150 3.7 15.1 1.0
CE1 B:HIS295 4.1 15.9 1.0
CD2 B:HIS148 4.2 20.4 1.0
CD2 B:LEU145 4.3 29.5 1.0
CD2 B:HIS295 4.6 15.4 1.0
ND1 B:HIS148 4.6 23.1 1.0
O B:HOH658 4.6 19.4 1.0
NH2 B:ARG313 4.6 22.9 1.0
C3 B:TLA402 4.8 28.0 1.0

Reference:

Y.H.Hsiao, S.J.Huang, E.C.Lin, Y.C.Lee, C.Y.Chang. Crystal Structure of Cmnc in Complex with L-Arginine To Be Published.
Page generated: Thu Aug 7 10:14:58 2025

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