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Iron in PDB 7y6f: Cryo-Em Structure of Apo Form of Scbfr

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 59;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Apo Form of Scbfr (pdb code 7y6f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 59 binding sites of Iron where determined in the Cryo-Em Structure of Apo Form of Scbfr, PDB code: 7y6f:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 59 in 7y6f

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Iron binding site 1 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:9.5
occ:1.00
 OE1 A:GLU51 2.5 5.3 1.0
OE2 A:GLU127 2.6 7.3 1.0
OE1 A:GLU18 2.6 5.1 1.0
OE2 A:GLU18 2.6 5.1 1.0
ND1 A:HIS54 2.7 5.7 1.0
CD A:GLU18 3.0 5.1 1.0
CD A:GLU51 3.4 5.3 1.0
OE2 A:GLU51 3.6 5.3 1.0
CG A:HIS54 3.6 5.7 1.0
CD A:GLU127 3.7 7.3 1.0
CE1 A:HIS54 3.7 5.7 1.0
CB A:HIS54 3.8 5.7 1.0
OE1 A:GLU127 4.1 7.3 1.0
FE A:FE202 4.2 30.0 1.0
CG A:GLU18 4.5 5.1 1.0
CG2 A:ILE123 4.6 6.9 1.0
CA A:GLU51 4.6 5.3 1.0
CG A:GLU51 4.6 5.3 1.0
CB A:GLU51 4.8 5.3 1.0
NE2 A:HIS54 4.8 5.7 1.0
CD2 A:HIS54 4.8 5.7 1.0
CG A:GLU127 4.9 7.3 1.0

Iron binding site 2 out of 59 in 7y6f

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Iron binding site 2 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:30.0
occ:1.00
 OE2 A:GLU51 2.2 5.3 1.0
OE2 A:GLU94 2.3 8.4 1.0
OE1 A:GLU127 2.6 7.3 1.0
CD A:GLU94 3.1 8.4 1.0
OE1 A:GLU94 3.3 8.4 1.0
CD A:GLU51 3.3 5.3 1.0
ND1 A:HIS130 3.5 6.6 1.0
CD A:GLU127 3.5 7.3 1.0
OH A:TYR25 3.8 4.8 1.0
OE1 A:GLU51 3.8 5.3 1.0
OE2 A:GLU127 3.8 7.3 1.0
CE1 A:TYR25 4.1 4.8 1.0
FE A:FE2201 4.2 9.5 1.0
CE1 A:HIS130 4.4 6.6 1.0
CG A:HIS130 4.4 6.6 1.0
CZ A:TYR25 4.4 4.8 1.0
CB A:HIS130 4.5 6.6 1.0
CG A:GLU94 4.6 8.4 1.0
CG A:GLU51 4.6 5.3 1.0
OE1 A:GLU47 4.7 5.1 1.0
CG A:GLU127 4.9 7.3 1.0
CA A:GLU127 4.9 7.3 1.0

Iron binding site 3 out of 59 in 7y6f

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Iron binding site 3 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:6.1
occ:1.00
 FE A:HEM203 0.0 6.1 1.0
NC A:HEM203 2.1 6.1 1.0
NA A:HEM203 2.1 6.1 1.0
ND A:HEM203 2.1 6.1 1.0
NB A:HEM203 2.1 6.1 1.0
SD B:MET52 2.7 5.1 1.0
C1A A:HEM203 2.9 6.1 1.0
C4A A:HEM203 2.9 6.1 1.0
C4D A:HEM203 3.1 6.1 1.0
C1C A:HEM203 3.1 6.1 1.0
C4C A:HEM203 3.1 6.1 1.0
C1B A:HEM203 3.1 6.1 1.0
C4B A:HEM203 3.1 6.1 1.0
C1D A:HEM203 3.1 6.1 1.0
CE B:MET52 3.1 5.1 1.0
SD A:MET52 3.1 5.4 1.0
CHA A:HEM203 3.4 6.1 1.0
CHB A:HEM203 3.4 6.1 1.0
CHC A:HEM203 3.4 6.1 1.0
CHD A:HEM203 3.5 6.1 1.0
C2A A:HEM203 4.0 6.1 1.0
C3A A:HEM203 4.0 6.1 1.0
CE A:MET52 4.2 5.4 1.0
C2C A:HEM203 4.3 6.1 1.0
C3C A:HEM203 4.3 6.1 1.0
C3D A:HEM203 4.3 6.1 1.0
C2B A:HEM203 4.3 6.1 1.0
C3B A:HEM203 4.3 6.1 1.0
C2D A:HEM203 4.3 6.1 1.0
CG B:MET52 4.4 5.1 1.0
CG A:MET52 4.4 5.4 1.0
CE1 B:PHE49 4.5 4.9 1.0
CD1 B:PHE49 4.7 4.9 1.0
CB A:MET52 5.0 5.4 1.0

Iron binding site 4 out of 59 in 7y6f

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Iron binding site 4 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:11.3
occ:1.00
 OE1 B:GLU127 2.5 7.2 1.0
OE1 B:GLU51 2.5 5.1 1.0
OE1 B:GLU18 2.6 4.9 1.0
OE2 B:GLU18 2.6 4.9 1.0
ND1 B:HIS54 2.7 5.3 1.0
CD B:GLU18 2.9 4.9 1.0
CD B:GLU51 3.4 5.1 1.0
OE2 B:GLU51 3.6 5.1 1.0
CD B:GLU127 3.6 7.2 1.0
CG B:HIS54 3.7 5.3 1.0
CE1 B:HIS54 3.7 5.3 1.0
CB B:HIS54 3.8 5.3 1.0
OE2 B:GLU127 4.1 7.2 1.0
CG B:GLU18 4.4 4.9 1.0
FE B:FE202 4.4 30.0 1.0
CG2 B:ILE123 4.5 6.7 1.0
CG B:GLU51 4.7 5.1 1.0
CA B:GLU51 4.8 5.1 1.0
NE2 B:HIS54 4.8 5.3 1.0
CD2 B:HIS54 4.8 5.3 1.0
CG B:GLU127 4.9 7.2 1.0

Iron binding site 5 out of 59 in 7y6f

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Iron binding site 5 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:30.0
occ:1.00
 OE2 B:GLU127 2.2 7.2 1.0
OE2 B:GLU94 2.4 8.2 1.0
OE2 B:GLU51 3.0 5.1 1.0
OE1 B:GLU94 3.1 8.2 1.0
CD B:GLU94 3.1 8.2 1.0
CD B:GLU127 3.3 7.2 1.0
ND1 B:HIS130 3.4 6.4 1.0
OE1 B:GLU127 3.7 7.2 1.0
CD B:GLU51 3.8 5.1 1.0
CB B:HIS130 4.0 6.4 1.0
CG B:HIS130 4.1 6.4 1.0
OE1 B:GLU51 4.1 5.1 1.0
OH B:TYR25 4.3 4.8 1.0
CA B:GLU127 4.4 7.2 1.0
CE1 B:HIS130 4.4 6.4 1.0
FE B:FE2201 4.4 11.3 1.0
CG B:GLU94 4.5 8.2 1.0
CG B:GLU127 4.5 7.2 1.0
CE1 B:TYR25 4.6 4.8 1.0
CB B:GLU127 4.7 7.2 1.0
OE1 B:GLU47 4.9 4.8 1.0
CZ B:TYR25 5.0 4.8 1.0

Iron binding site 6 out of 59 in 7y6f

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Iron binding site 6 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:8.8
occ:1.00
 OE1 C:GLU51 2.5 5.9 1.0
OE2 C:GLU127 2.5 7.2 1.0
OE1 C:GLU18 2.6 5.0 1.0
OE2 C:GLU18 2.6 5.0 1.0
ND1 C:HIS54 2.7 5.9 1.0
CD C:GLU18 2.9 5.0 1.0
CD C:GLU51 3.6 5.9 1.0
CG C:HIS54 3.6 5.9 1.0
CD C:GLU127 3.7 7.2 1.0
CE1 C:HIS54 3.7 5.9 1.0
CB C:HIS54 3.7 5.9 1.0
OE2 C:GLU51 4.1 5.9 1.0
OE1 C:GLU127 4.1 7.2 1.0
FE C:FE202 4.3 30.0 1.0
CG2 C:ILE123 4.4 6.6 1.0
CG C:GLU18 4.4 5.0 1.0
CA C:GLU51 4.6 5.9 1.0
CD2 C:HIS54 4.8 5.9 1.0
NE2 C:HIS54 4.8 5.9 1.0
CG C:GLU51 4.8 5.9 1.0
CB C:GLU51 4.9 5.9 1.0
CG C:GLU127 4.9 7.2 1.0
O C:GLU51 4.9 5.9 1.0

Iron binding site 7 out of 59 in 7y6f

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Iron binding site 7 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:30.0
occ:1.00
 CB C:ALA97 3.7 8.3 1.0
CB C:ALA21 4.0 4.5 1.0
O C:ALA17 4.1 5.0 1.0
CG1 C:VAL93 4.1 8.4 1.0
OE2 C:GLU127 4.2 7.2 1.0
OE2 C:GLU18 4.3 5.0 1.0
FE C:FE2201 4.3 8.8 1.0
C C:ALA17 4.4 5.0 1.0
CB C:ALA17 4.5 5.0 1.0
NE2 C:GLN14 4.5 5.7 1.0
OE1 C:GLU51 4.6 5.9 1.0
CD C:GLU18 4.6 5.0 1.0
N C:GLU18 4.7 5.0 1.0
CD C:GLU127 4.7 7.2 1.0
CA C:GLU18 4.8 5.0 1.0
O C:VAL93 4.8 8.4 1.0
OE1 C:GLU18 4.9 5.0 1.0
OE1 C:GLU127 4.9 7.2 1.0

Iron binding site 8 out of 59 in 7y6f

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Iron binding site 8 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe203

b:6.8
occ:1.00
 FE C:HEM203 0.0 6.8 1.0
CE C:MET52 1.6 6.5 1.0
NA C:HEM203 2.0 6.8 1.0
NC C:HEM203 2.0 6.8 1.0
NB C:HEM203 2.1 6.8 1.0
ND C:HEM203 2.1 6.8 1.0
C4C C:HEM203 3.0 6.8 1.0
C1C C:HEM203 3.0 6.8 1.0
C4A C:HEM203 3.0 6.8 1.0
C1A C:HEM203 3.1 6.8 1.0
SD D:MET52 3.1 5.6 1.0
C1D C:HEM203 3.1 6.8 1.0
C4B C:HEM203 3.1 6.8 1.0
C1B C:HEM203 3.1 6.8 1.0
C4D C:HEM203 3.1 6.8 1.0
SD C:MET52 3.2 6.5 1.0
CHD C:HEM203 3.4 6.8 1.0
CHC C:HEM203 3.4 6.8 1.0
CHB C:HEM203 3.4 6.8 1.0
CHA C:HEM203 3.5 6.8 1.0
CE D:MET52 4.1 5.6 1.0
C3C C:HEM203 4.2 6.8 1.0
C2C C:HEM203 4.2 6.8 1.0
C3A C:HEM203 4.3 6.8 1.0
C2A C:HEM203 4.3 6.8 1.0
C3B C:HEM203 4.3 6.8 1.0
C2D C:HEM203 4.3 6.8 1.0
C2B C:HEM203 4.3 6.8 1.0
C3D C:HEM203 4.4 6.8 1.0
HHD C:HEM203 4.4 6.8 1.0
HHA C:HEM203 4.4 6.8 1.0
HHC C:HEM203 4.4 6.8 1.0
HHB C:HEM203 4.4 6.8 1.0
CG C:MET52 4.5 6.5 1.0
CG D:MET52 4.5 5.6 1.0
CE1 C:PHE49 4.7 5.9 1.0
CD1 C:PHE49 4.9 5.9 1.0

Iron binding site 9 out of 59 in 7y6f

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Iron binding site 9 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:10.4
occ:1.00
 OE2 D:GLU51 2.5 5.5 1.0
OE2 D:GLU127 2.5 7.5 1.0
OE2 D:GLU18 2.6 5.2 1.0
OE1 D:GLU18 2.6 5.2 1.0
ND1 D:HIS54 2.7 5.8 1.0
CD D:GLU18 2.9 5.2 1.0
CD D:GLU51 3.5 5.5 1.0
CG D:HIS54 3.6 5.8 1.0
CD D:GLU127 3.6 7.5 1.0
CE1 D:HIS54 3.7 5.8 1.0
CB D:HIS54 3.8 5.8 1.0
OE1 D:GLU51 3.9 5.5 1.0
OE1 D:GLU127 4.1 7.5 1.0
FE D:FE202 4.3 30.0 1.0
CG2 D:ILE123 4.4 7.0 1.0
CG D:GLU18 4.4 5.2 1.0
CA D:GLU51 4.7 5.5 1.0
CD2 D:HIS54 4.8 5.8 1.0
NE2 D:HIS54 4.8 5.8 1.0
CG D:GLU51 4.8 5.5 1.0
CG D:GLU127 4.8 7.5 1.0
CB D:GLU51 5.0 5.5 1.0
NE2 D:GLN14 5.0 6.3 1.0

Iron binding site 10 out of 59 in 7y6f

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Iron binding site 10 out of 59 in the Cryo-Em Structure of Apo Form of Scbfr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Apo Form of Scbfr within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe202

b:30.0
occ:1.00
 OE1 D:GLU127 2.0 7.5 1.0
OE2 D:GLU94 2.6 8.6 1.0
OE1 D:GLU51 2.7 5.5 1.0
CD D:GLU127 3.1 7.5 1.0
OE1 D:GLU94 3.2 8.6 1.0
CD D:GLU94 3.2 8.6 1.0
OE2 D:GLU127 3.6 7.5 1.0
ND1 D:HIS130 3.6 6.7 1.0
CD D:GLU51 3.8 5.5 1.0
CB D:HIS130 4.1 6.7 1.0
OE2 D:GLU51 4.2 5.5 1.0
CG D:HIS130 4.2 6.7 1.0
CA D:GLU127 4.3 7.5 1.0
FE D:FE2201 4.3 10.4 1.0
CG D:GLU127 4.4 7.5 1.0
OH D:TYR25 4.5 5.0 1.0
OE2 D:GLU47 4.6 5.4 1.0
CE1 D:HIS130 4.6 6.7 1.0
CB D:GLU127 4.6 7.5 1.0
CG D:GLU94 4.7 8.6 1.0
CE1 D:TYR25 4.8 5.0 1.0
N D:GLU127 4.8 7.5 1.0
O D:ASP126 4.9 7.4 1.0

Reference:

C.Jobichen, J.Sivaraman. Cryo-Em Structure of Apo Form of Scbfr To Be Published.
Page generated: Thu Aug 7 10:15:26 2025

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