Atomistry » Iron » PDB 7xgy-7y9j » 7y98
Atomistry »
  Iron »
    PDB 7xgy-7y9j »
      7y98 »

Iron in PDB 7y98: Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone

Protein crystallography data

The structure of Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone, PDB code: 7y98 was solved by P.P.Shen, J.-W.Huang, X.Li, W.D.Liu, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.65 / 2.27
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.722, 95.703, 78.987, 90, 104.3, 90
R / Rfree (%) 23.7 / 27.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone (pdb code 7y98). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone, PDB code: 7y98:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7y98

Go back to Iron Binding Sites List in 7y98
Iron binding site 1 out of 2 in the Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:33.0
occ:1.00
FE A:HEM501 0.0 33.0 1.0
NC A:HEM501 2.0 31.7 1.0
ND A:HEM501 2.0 46.5 1.0
NA A:HEM501 2.0 34.3 1.0
NB A:HEM501 2.0 46.5 1.0
SG A:CYS351 2.3 64.1 1.0
C1C A:HEM501 3.0 36.7 1.0
C4B A:HEM501 3.0 38.1 1.0
C4D A:HEM501 3.0 41.4 1.0
C4C A:HEM501 3.0 37.2 1.0
C1A A:HEM501 3.0 40.8 1.0
C1D A:HEM501 3.1 41.8 1.0
C4A A:HEM501 3.1 36.6 1.0
C1B A:HEM501 3.1 40.4 1.0
CB A:CYS351 3.4 40.4 1.0
CHC A:HEM501 3.4 37.2 1.0
CHA A:HEM501 3.4 40.1 1.0
CHD A:HEM501 3.5 40.6 1.0
CHB A:HEM501 3.5 38.2 1.0
O A:ALA241 3.9 33.0 1.0
CA A:CYS351 4.2 36.5 1.0
C2C A:HEM501 4.2 38.4 1.0
C3C A:HEM501 4.2 36.7 1.0
C3B A:HEM501 4.3 41.7 1.0
C3D A:HEM501 4.3 42.0 1.0
C2A A:HEM501 4.3 41.2 1.0
C3A A:HEM501 4.3 42.3 1.0
C2B A:HEM501 4.3 41.8 1.0
C2D A:HEM501 4.3 42.0 1.0
O17 A:TES502 4.3 44.1 1.0
CB A:ALA241 4.5 36.6 1.0
N A:GLY353 4.7 36.0 1.0
C A:ALA241 4.8 38.8 1.0
C A:CYS351 4.8 35.2 1.0
C16 A:TES502 4.9 54.7 1.0
N A:LEU352 4.9 38.2 1.0

Iron binding site 2 out of 2 in 7y98

Go back to Iron Binding Sites List in 7y98
Iron binding site 2 out of 2 in the Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of CYP109B4 From Bacillus Sonorensis in Complex with Testosterone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:56.6
occ:1.00
FE B:HEM501 0.0 56.6 1.0
NC B:HEM501 2.0 35.6 1.0
NA B:HEM501 2.0 47.2 1.0
ND B:HEM501 2.1 47.7 1.0
NB B:HEM501 2.1 42.3 1.0
SG B:CYS351 2.3 50.9 1.0
C1C B:HEM501 3.0 43.3 1.0
C1A B:HEM501 3.0 46.2 1.0
C4C B:HEM501 3.0 40.1 1.0
C4A B:HEM501 3.1 45.8 1.0
C4D B:HEM501 3.1 44.9 1.0
C4B B:HEM501 3.1 38.4 1.0
C1D B:HEM501 3.1 43.8 1.0
O3 B:TES502 3.1 89.1 1.0
C1B B:HEM501 3.1 41.3 1.0
CB B:CYS351 3.4 41.2 1.0
CHC B:HEM501 3.4 40.8 1.0
CHA B:HEM501 3.4 43.0 1.0
CHD B:HEM501 3.4 36.3 1.0
CHB B:HEM501 3.5 43.8 1.0
O B:ALA241 3.9 35.9 1.0
C3 B:TES502 4.2 80.7 1.0
CA B:CYS351 4.2 45.2 1.0
C2C B:HEM501 4.2 39.5 1.0
C3A B:HEM501 4.3 45.8 1.0
C3C B:HEM501 4.3 33.5 1.0
C2A B:HEM501 4.3 51.1 1.0
C3D B:HEM501 4.3 48.8 1.0
C2D B:HEM501 4.3 48.6 1.0
C3B B:HEM501 4.3 47.2 1.0
C2B B:HEM501 4.3 46.0 1.0
C2 B:TES502 4.6 74.9 1.0
CB B:ALA241 4.6 38.8 1.0
N B:GLY353 4.8 39.8 1.0
C B:CYS351 4.8 40.3 1.0
C B:ALA241 4.8 40.1 1.0
N B:LEU352 4.9 45.6 1.0

Reference:

X.Zhang, P.Shen, J.Zhao, Y.Chen, X.Li, J.W.Huang, L.Zhang, Q.Li, C.Gao, Q.Xing, C.C.Chen, R.T.Guo, A.Li. Rationally Controlling Selective Steroid Hydroxylation Via Scaffold Sampling of A P450 Family Acs Catalysis V. 13 1280 2023.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.2C04906
Page generated: Fri Aug 9 11:30:06 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy