Iron in PDB 7yhp: Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution

All present enzymatic activity of Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution:
4.2.99.18;

The binding sites of Iron atom in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution (pdb code 7yhp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution, PDB code: 7yhp:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1401 b:40.2 occ:1.00 FE1 A:SF41401 0.0 40.2 1.0 SG A:CYS1054 2.3 39.2 1.0 S4 A:SF41401 2.3 40.2 1.0 S2 A:SF41401 2.3 40.2 1.0 S3 A:SF41401 2.3 40.2 1.0 FE3 A:SF41401 2.7 40.2 1.0 FE2 A:SF41401 2.7 40.2 1.0 FE4 A:SF41401 2.7 40.2 1.0 CB A:CYS1054 3.0 39.2 1.0 S1 A:SF41401 3.9 40.2 1.0 CA A:CYS1054 4.4 39.2 1.0 SG A:CYS1038 4.7 34.1 1.0 SG A:CYS1045 4.7 36.4 1.0 O A:MET1050 4.7 36.5 1.0 N A:PHE1057 4.8 42.8 1.0 SG A:CYS1048 4.8 37.8 1.0 CB A:PHE1057 4.9 42.8 1.0 CD2 A:LEU981 4.9 36.5 1.0 CB A:HIS1056 4.9 41.7 1.0 CB A:ARG980 5.0 37.7 1.0

Iron binding site 2 out of 4 in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1401 b:40.2 occ:1.00 FE2 A:SF41401 0.0 40.2 1.0 SG A:CYS1038 2.3 34.1 1.0 S1 A:SF41401 2.3 40.2 1.0 S3 A:SF41401 2.3 40.2 1.0 S4 A:SF41401 2.3 40.2 1.0 FE4 A:SF41401 2.7 40.2 1.0 FE1 A:SF41401 2.7 40.2 1.0 FE3 A:SF41401 2.7 40.2 1.0 CB A:CYS1038 2.9 34.1 1.0 CA A:CYS1038 3.6 34.1 1.0 S2 A:SF41401 3.9 40.2 1.0 NH1 A:ARG980 4.3 37.7 1.0 CB A:PRO1043 4.4 37.5 1.0 CD A:ARG980 4.4 37.7 1.0 N A:CYS1038 4.5 34.1 1.0 CZ A:PHE1033 4.5 28.1 1.0 CE2 A:PHE1033 4.6 28.1 1.0 SG A:CYS1054 4.7 39.2 1.0 SG A:CYS1048 4.7 37.8 1.0 C A:CYS1038 4.8 34.1 1.0 SG A:CYS1045 4.8 36.4 1.0 O A:PHE1037 4.8 30.3 1.0 CG A:PRO1043 4.9 37.5 1.0 C A:PHE1037 4.9 30.3 1.0

Iron binding site 3 out of 4 in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1401 b:40.2 occ:1.00 FE3 A:SF41401 0.0 40.2 1.0 SG A:CYS1045 2.3 36.4 1.0 S4 A:SF41401 2.3 40.2 1.0 S2 A:SF41401 2.3 40.2 1.0 S1 A:SF41401 2.3 40.2 1.0 FE1 A:SF41401 2.7 40.2 1.0 FE4 A:SF41401 2.7 40.2 1.0 FE2 A:SF41401 2.7 40.2 1.0 CB A:CYS1045 3.4 36.4 1.0 CA A:CYS1045 3.7 36.4 1.0 S3 A:SF41401 3.9 40.2 1.0 CB A:PRO1043 4.0 37.5 1.0 CG A:PRO1043 4.2 37.5 1.0 N A:CYS1045 4.2 36.4 1.0 CB A:CYS1048 4.6 37.8 1.0 SG A:CYS1054 4.7 39.2 1.0 SG A:CYS1048 4.7 37.8 1.0 SG A:CYS1038 4.8 34.1 1.0 C A:ASN1044 4.9 33.8 1.0 C A:PRO1043 5.0 37.5 1.0

Iron binding site 4 out of 4 in the Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC-Dsdna at 3.1 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1401 b:40.2 occ:1.00 FE4 A:SF41401 0.0 40.2 1.0 SG A:CYS1048 2.3 37.8 1.0 S1 A:SF41401 2.3 40.2 1.0 S3 A:SF41401 2.3 40.2 1.0 S2 A:SF41401 2.3 40.2 1.0 FE3 A:SF41401 2.7 40.2 1.0 FE2 A:SF41401 2.7 40.2 1.0 FE1 A:SF41401 2.7 40.2 1.0 CB A:CYS1048 3.1 37.8 1.0 S4 A:SF41401 3.9 40.2 1.0 CZ A:PHE1033 3.9 28.1 1.0 CA A:CYS1048 4.5 37.8 1.0 CE1 A:PHE1033 4.7 28.1 1.0 O A:MET1050 4.7 36.5 1.0 CE2 A:PHE1033 4.7 28.1 1.0 CB A:MET1050 4.7 36.5 1.0 CB A:CYS1038 4.8 34.1 1.0 SG A:CYS1045 4.8 36.4 1.0 C A:MET1050 4.8 36.5 1.0 SG A:CYS1038 4.8 34.1 1.0 CA A:CYS1045 4.8 36.4 1.0 SG A:CYS1054 4.9 39.2 1.0 CB A:CYS1054 5.0 39.2 1.0

X.Du, J.Du. Cryoem Structure of Arabidopsis ROS1 in Complex with 5MC Dsdna at 3.1 Angstroms Resolution To Be Published.