Iron in PDB 7ylo: Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation

The structure of Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation, PDB code: 7ylo was solved by J.Cheng, Y.Luo, J.Zhu, R.Tan, N.Wang, A.A.Lebedev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.59 / 1.83
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	135.179, 135.179, 83.979, 90, 90, 120
R / Rfree (%)	20.2 / 23.8

The binding sites of Iron atom in the Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation (pdb code 7ylo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation, PDB code: 7ylo:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:26.0 occ:0.65 FE A:HEM401 0.0 26.0 0.7 ND A:HEM401 1.9 31.2 1.0 NA A:HEM401 2.0 31.6 1.0 NE2 A:HIS227 2.0 23.5 1.0 NC A:HEM401 2.1 30.6 1.0 NB A:HEM401 2.1 32.0 1.0 C4D A:HEM401 2.9 32.4 1.0 C1D A:HEM401 2.9 30.5 1.0 CE1 A:HIS227 3.0 26.0 1.0 C1A A:HEM401 3.0 33.9 1.0 C4A A:HEM401 3.1 31.1 1.0 CD2 A:HIS227 3.1 23.8 1.0 C4C A:HEM401 3.1 30.8 1.0 C1B A:HEM401 3.1 28.3 1.0 C4B A:HEM401 3.2 30.0 1.0 C1C A:HEM401 3.2 28.2 1.0 CHA A:HEM401 3.4 34.7 1.0 CHD A:HEM401 3.4 30.3 1.0 CHB A:HEM401 3.5 30.7 1.0 CHC A:HEM401 3.6 30.6 1.0 ND1 A:HIS227 4.1 24.5 1.0 C3D A:HEM401 4.2 32.8 1.0 CG A:HIS227 4.2 23.9 1.0 C2D A:HEM401 4.2 32.9 1.0 C2A A:HEM401 4.2 32.7 1.0 C3A A:HEM401 4.2 33.5 1.0 ND2 A:ASN246 4.3 37.7 1.0 NH1 A:ARG244 4.3 37.0 1.0 C3C A:HEM401 4.3 30.6 1.0 C2B A:HEM401 4.4 30.5 1.0 C2C A:HEM401 4.4 30.2 1.0 C3B A:HEM401 4.4 27.7 1.0 CD A:ARG244 4.5 30.5 1.0 OG A:SER231 5.0 34.1 1.0

Iron binding site 2 out of 2 in the Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Conversion of Indole-3-Acetic Acid Into Indole-3-Aldehyde in Bacteria Metabolic Network of Tryptophan Around the Indole-3-Aldehyde Formation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:25.9 occ:0.65 FE B:HEM401 0.0 25.9 0.7 ND B:HEM401 1.9 31.2 1.0 NA B:HEM401 2.0 31.7 1.0 NE2 B:HIS227 2.0 23.6 1.0 NC B:HEM401 2.1 30.5 1.0 NB B:HEM401 2.1 31.7 1.0 C4D B:HEM401 2.9 32.6 1.0 C1D B:HEM401 2.9 30.7 1.0 CE1 B:HIS227 3.0 26.1 1.0 C1A B:HEM401 3.0 33.8 1.0 C4A B:HEM401 3.1 31.2 1.0 CD2 B:HIS227 3.1 24.0 1.0 C4C B:HEM401 3.1 30.6 1.0 C1B B:HEM401 3.1 28.1 1.0 C4B B:HEM401 3.2 29.6 1.0 C1C B:HEM401 3.2 28.0 1.0 CHA B:HEM401 3.4 34.8 1.0 CHD B:HEM401 3.4 30.4 1.0 CHB B:HEM401 3.5 30.7 1.0 CHC B:HEM401 3.6 30.2 1.0 ND1 B:HIS227 4.1 24.8 1.0 C3D B:HEM401 4.2 32.8 1.0 CG B:HIS227 4.2 24.1 1.0 C2D B:HEM401 4.2 33.0 1.0 C2A B:HEM401 4.2 32.8 1.0 C3A B:HEM401 4.2 33.7 1.0 ND2 B:ASN246 4.3 37.4 1.0 NH1 B:ARG244 4.3 37.0 1.0 C3C B:HEM401 4.3 31.0 1.0 C2B B:HEM401 4.4 30.0 1.0 C2C B:HEM401 4.4 30.3 1.0 C3B B:HEM401 4.4 27.4 1.0 CD B:ARG244 4.5 30.5 1.0 OG B:SER231 5.0 34.6 1.0

Y.Luo, J.Cheng, Y.Luo, J.Zhu, R.Tan, N.Wang, A.A.Lebedev. N/A N/A.