Iron in PDB 7yls: Structure of A Bacteria Protein Complex

The structure of Structure of A Bacteria Protein Complex, PDB code: 7yls was solved by H.Zhang, Y.J.Ma, G.M.Yu, X.Z.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.61 / 1.80
Space group	P 2 3
Cell size a, b, c (Å), α, β, γ (°)	135.613, 135.613, 135.613, 90, 90, 90
R / Rfree (%)	15.2 / 16.8

The binding sites of Iron atom in the Structure of A Bacteria Protein Complex (pdb code 7yls). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Structure of A Bacteria Protein Complex, PDB code: 7yls:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Structure of A Bacteria Protein Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Bacteria Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:26.8 occ:1.00 FE1 B:FES501 0.0 26.8 1.0 ND1 B:HIS109 2.1 24.2 1.0 ND1 B:HIS87 2.1 24.9 1.0 S1 B:FES501 2.2 29.2 1.0 S2 B:FES501 2.3 28.5 1.0 FE2 B:FES501 2.7 25.3 1.0 HB3 B:HIS87 2.8 31.2 1.0 HB2 B:HIS109 2.9 34.9 1.0 CE1 B:HIS109 3.0 26.8 1.0 CG B:HIS87 3.1 25.0 1.0 CE1 B:HIS87 3.1 31.4 1.0 CG B:HIS109 3.1 28.8 1.0 HE1 B:HIS109 3.1 32.3 1.0 HE1 B:HIS87 3.3 37.9 1.0 CB B:HIS87 3.4 25.9 1.0 H B:HIS109 3.4 32.8 1.0 CB B:HIS109 3.4 28.9 1.0 HB3 B:TYR108 3.5 26.3 1.0 H B:LYS88 3.6 27.8 1.0 HB2 B:HIS87 3.8 31.2 1.0 HG3 B:LYS88 3.9 29.1 1.0 N B:HIS109 3.9 27.1 1.0 NE2 B:HIS109 4.1 25.4 1.0 HB2 B:LYS88 4.1 29.6 1.0 NE2 B:HIS87 4.2 28.4 1.0 CD2 B:HIS87 4.2 26.8 1.0 CD2 B:HIS109 4.2 27.0 1.0 HB3 B:HIS109 4.2 34.9 1.0 N B:LYS88 4.3 23.3 1.0 CA B:HIS109 4.3 26.4 1.0 HD2 B:TYR108 4.4 37.6 1.0 CB B:TYR108 4.4 22.3 1.0 SG B:CYS106 4.4 25.5 1.0 SG B:CYS85 4.5 25.2 1.0 HG B:SER90 4.5 35.6 1.0 HE2 B:LYS88 4.6 32.0 1.0 CA B:HIS87 4.7 27.6 1.0 CD1 B:TRP111 4.7 28.3 1.0 CG B:LYS88 4.7 24.1 1.0 HD1 B:TRP111 4.7 34.2 1.0 NE1 B:TRP111 4.8 28.4 1.0 CD2 B:TYR108 4.8 31.1 1.0 CB B:LYS88 4.8 24.5 1.0 HE1 B:TRP111 4.8 34.3 1.0 C B:TYR108 4.8 27.7 1.0 CG B:TYR108 4.9 23.8 1.0 HE2 B:HIS109 4.9 30.7 1.0 HB3 B:CYS106 4.9 31.9 1.0 HB2 B:TYR108 4.9 26.3 1.0 H B:TRP111 4.9 33.6 1.0 C B:HIS87 4.9 26.2 1.0 HE2 B:HIS87 5.0 34.3 1.0 H B:HIS87 5.0 30.7 1.0

Iron binding site 2 out of 3 in the Structure of A Bacteria Protein Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Bacteria Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:25.3 occ:1.00 FE2 B:FES501 0.0 25.3 1.0 S1 B:FES501 2.2 29.2 1.0 S2 B:FES501 2.3 28.5 1.0 SG B:CYS106 2.3 25.5 1.0 SG B:CYS85 2.4 25.2 1.0 FE1 B:FES501 2.7 26.8 1.0 HB3 B:HIS87 3.0 31.2 1.0 HB2 B:CYS106 3.1 31.9 1.0 CB B:CYS106 3.1 26.4 1.0 HB3 B:CYS85 3.1 32.0 1.0 HB3 B:CYS106 3.1 31.9 1.0 CB B:CYS85 3.1 26.5 1.0 HB2 B:CYS85 3.1 32.0 1.0 HB2 B:SER90 3.5 31.4 1.0 H B:HIS109 3.7 32.8 1.0 HG B:SER90 3.7 35.6 1.0 HB3 B:TYR108 3.7 26.3 1.0 H B:LYS88 3.8 27.8 1.0 CB B:HIS87 4.0 25.9 1.0 HB2 B:TRP111 4.0 33.5 1.0 H B:HIS87 4.1 30.7 1.0 HB2 B:HIS87 4.2 31.2 1.0 OG B:SER90 4.2 29.5 1.0 H B:SER90 4.3 28.6 1.0 CB B:SER90 4.3 26.0 1.0 ND1 B:HIS87 4.3 24.9 1.0 H B:TYR108 4.3 30.2 1.0 ND1 B:HIS109 4.4 24.2 1.0 HB2 B:HIS109 4.4 34.9 1.0 H B:TRP111 4.4 33.6 1.0 N B:HIS109 4.5 27.1 1.0 CA B:CYS106 4.5 23.4 1.0 CB B:TYR108 4.6 22.3 1.0 H B:ALA110 4.6 34.4 1.0 CA B:CYS85 4.6 23.4 1.0 CG B:HIS87 4.6 25.0 1.0 HB2 B:TYR108 4.6 26.3 1.0 N B:LYS88 4.7 23.3 1.0 HD13 B:LEU92 4.7 28.9 1.0 H B:GLY89 4.7 27.5 1.0 HE1 B:PHE113 4.8 33.9 1.0 HA B:CYS106 4.8 28.3 1.0 N B:HIS87 4.8 25.4 1.0 CB B:TRP111 4.9 27.7 1.0 HB3 B:SER90 4.9 31.4 1.0 HD11 B:LEU92 4.9 28.9 1.0 CA B:HIS87 4.9 27.6 1.0 N B:SER90 4.9 23.6 1.0 HA B:CYS85 5.0 28.3 1.0 CG B:TRP111 5.0 26.4 1.0

Iron binding site 3 out of 3 in the Structure of A Bacteria Protein Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Bacteria Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe505 b:24.6 occ:1.00 OD2 B:ASP377 2.0 33.1 1.0 NE2 B:HIS221 2.0 47.9 1.0 NE2 B:HIS216 2.0 28.7 1.0 O B:HOH891 2.3 34.9 1.0 CG B:ASP377 2.6 33.1 1.0 OD1 B:ASP377 2.6 36.2 1.0 CE1 B:HIS221 2.8 29.9 1.0 HE1 B:HIS221 3.0 36.1 1.0 HD21 B:ASN210 3.0 28.6 1.0 CE1 B:HIS216 3.0 26.0 1.0 CD2 B:HIS221 3.1 34.8 1.0 CD2 B:HIS216 3.1 25.9 1.0 HE1 B:HIS216 3.1 31.4 1.0 HD2 B:HIS216 3.3 31.3 1.0 HD2 B:HIS221 3.3 41.9 1.0 ND2 B:ASN210 3.8 23.7 1.0 ND1 B:HIS221 4.0 28.1 1.0 ND1 B:HIS216 4.1 27.1 1.0 CG B:HIS221 4.1 26.4 1.0 O B:HOH766 4.1 36.4 1.0 CB B:ASP377 4.2 28.3 1.0 OD1 B:ASN210 4.2 29.0 1.0 CG B:HIS216 4.2 23.7 1.0 HG13 B:VAL373 4.2 40.8 1.0 HD22 B:ASN210 4.4 28.6 1.0 HB2 B:ASP377 4.4 34.2 1.0 CG B:ASN210 4.4 25.6 1.0 HA B:PRO217 4.5 32.9 1.0 HB3 B:ASP377 4.5 34.2 1.0 HG12 B:VAL373 4.5 40.8 1.0 HD1 B:HIS221 4.8 33.9 1.0 HB3 B:PRO217 4.8 36.1 1.0 CG1 B:VAL373 4.8 33.8 1.0 HD1 B:HIS216 4.9 32.7 1.0 HB3 B:ALA220 4.9 35.4 1.0 HA B:ASP377 5.0 30.2 1.0

H.Zhang, Y.J.Ma, G.M.Yu, X.Z.Li. Structure of A Bacteria Protein Complex To Be Published.