Iron in PDB 7yml: Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus

The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus also contains other interesting chemical elements:

Magnesium

(Mg)

25 atoms

The binding sites of Iron atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus (pdb code 7yml). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus, PDB code: 7yml:

Iron binding site 1 out of 1 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe406 b:66.2 occ:1.00 OE2 M:GLU233 2.0 48.5 1.0 OE1 M:GLU233 2.1 43.3 1.0 NE2 M:HIS218 2.1 26.2 1.0 NE2 L:HIS191 2.1 40.7 1.0 NE2 M:HIS265 2.2 25.9 1.0 NE2 L:HIS231 2.3 38.2 1.0 CD M:GLU233 2.3 37.8 1.0 CE1 M:HIS218 2.9 19.2 1.0 CE1 L:HIS191 2.9 30.8 1.0 CE1 M:HIS265 3.1 23.2 1.0 CE1 L:HIS231 3.2 34.8 1.0 CD2 M:HIS218 3.3 28.5 1.0 CD2 L:HIS191 3.3 27.9 1.0 CD2 M:HIS265 3.3 21.8 1.0 CD2 L:HIS231 3.3 27.7 1.0 CG M:GLU233 3.8 33.6 1.0 ND1 M:HIS218 4.1 21.9 1.0 ND1 L:HIS191 4.1 33.0 1.0 ND1 M:HIS265 4.2 23.6 1.0 CG M:HIS218 4.3 19.6 1.0 CG L:HIS191 4.3 30.7 1.0 ND1 L:HIS231 4.3 35.0 1.0 CG M:HIS265 4.4 15.2 1.0 CG L:HIS231 4.4 27.5 1.0 O M:HOH501 4.5 35.9 1.0 CG1 M:ILE222 4.5 28.3 1.0 CG2 L:VAL195 4.7 38.8 1.0 CB M:GLU233 4.8 34.0 1.0

K.Tani, R.Kanno, X.-C.Ji, I.Satoh, Y.Kobayashi, M.Hall, L.-J.Yu, Y.Kimura, A.Mizoguchi, B.M.Humbel, M.T.Madigan, Z.-Y.Wang-Otomo. Rhodobacter Capsulatus Forms A Compact Crescent-Shaped LH1-Rc Photocomplex Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-36460-W