Iron in PDB 7yzm: Mgadpnp-Bound Dccp:Dccp-R Complex

The structure of Mgadpnp-Bound Dccp:Dccp-R Complex, PDB code: 7yzm was solved by J.-H.Jeoung, H.Dobbek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.72 / 1.82
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	78.12, 81.673, 121.377, 100.61, 97.13, 90
R / Rfree (%)	16.4 / 20.1

The structure of Mgadpnp-Bound Dccp:Dccp-R Complex also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Iron atom in the Mgadpnp-Bound Dccp:Dccp-R Complex (pdb code 7yzm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the Mgadpnp-Bound Dccp:Dccp-R Complex, PDB code: 7yzm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:11.9 occ:1.00 FE1 A:BJ8501 0.0 11.9 1.0 S4 A:BJ8501 2.2 11.2 1.0 S9 A:BJ8501 2.3 17.6 1.0 S2 A:BJ8501 2.3 12.7 1.0 S3 A:BJ8501 2.3 11.5 1.0 FE4 A:BJ8501 2.7 11.6 1.0 FE3 A:BJ8501 2.7 10.5 1.0 FE2 A:BJ8501 2.7 10.3 1.0 HZ2 A:LYS146 3.5 18.0 0.5 HE2 A:LYS146 3.5 17.3 0.5 HD13 A:LEU115 3.7 20.1 1.0 FE8 A:BJ8501 3.8 16.3 1.0 S1 A:BJ8501 3.9 10.9 1.0 HD2 A:PRO283 4.0 13.8 1.0 HE3 A:LYS146 4.0 16.4 0.5 HD2 A:LYS146 4.2 15.3 0.5 NZ A:LYS146 4.3 15.0 0.5 HD22 A:LEU115 4.3 12.5 1.0 CE A:LYS146 4.5 14.4 0.5 HG22 A:THR282 4.5 20.4 1.0 HG2 A:PRO283 4.5 18.4 1.0 HZ1 A:LYS146 4.6 18.0 0.5 CE A:LYS146 4.6 13.7 0.5 CD1 A:LEU115 4.6 16.7 1.0 S7 A:BJ8501 4.6 17.8 1.0 HZ2 A:LYS146 4.7 12.8 0.5 HZ3 A:LYS146 4.7 12.8 0.5 CD A:PRO283 4.7 11.5 1.0 HG3 A:PRO283 4.7 18.4 1.0 S6 A:BJ8501 4.7 14.8 1.0 HB3 A:LEU115 4.7 13.5 1.0 SG A:CYS143 4.8 11.8 1.0 HB A:THR282 4.8 12.2 1.0 NZ A:LYS146 4.9 10.6 0.5 CG A:PRO283 4.9 15.3 1.0 HD11 A:LEU115 4.9 20.1 1.0 HE2 A:TYR376 4.9 15.3 1.0 HD3 A:PRO283 4.9 13.8 1.0 HZ3 A:LYS146 4.9 18.0 0.5 CD A:LYS146 4.9 12.8 0.5 HG3 A:LYS146 4.9 16.1 0.5 SG A:CYS113 4.9 13.1 1.0 SG A:CYS373 5.0 11.9 1.0 HD3 A:LYS146 5.0 15.9 0.5 HE3 A:LYS146 5.0 17.3 0.5 HB3 A:CYS143 5.0 12.5 1.0

Iron binding site 2 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:10.3 occ:1.00 FE2 A:BJ8501 0.0 10.3 1.0 S3 A:BJ8501 2.2 11.5 1.0 S4 A:BJ8501 2.2 11.2 1.0 S1 A:BJ8501 2.3 10.9 1.0 SG A:CYS113 2.4 13.1 1.0 FE3 A:BJ8501 2.6 10.5 1.0 FE4 A:BJ8501 2.7 11.6 1.0 FE1 A:BJ8501 2.7 11.9 1.0 HB2 A:CYS113 3.1 12.4 1.0 CB A:CYS113 3.2 10.3 1.0 HB3 A:CYS113 3.2 12.4 1.0 HB3 A:LEU115 3.4 13.5 1.0 HB2 A:CYS373 3.6 12.7 1.0 HG13 A:ILE116 3.7 14.9 1.0 HD11 A:ILE116 3.9 18.1 1.0 S2 A:BJ8501 3.9 12.7 1.0 HD12 A:LEU370 3.9 15.0 1.0 HD13 A:LEU115 4.0 20.1 1.0 HD22 A:LEU115 4.2 12.5 1.0 HB2 A:LEU115 4.3 13.5 1.0 CB A:LEU115 4.3 11.2 1.0 HA A:CYS373 4.4 14.2 1.0 CB A:CYS373 4.4 10.6 1.0 CD1 A:ILE116 4.5 15.1 1.0 CG1 A:ILE116 4.5 12.4 1.0 HD12 A:ILE116 4.5 18.1 1.0 HB2 A:LEU370 4.5 12.6 1.0 H A:LEU115 4.5 13.5 1.0 SG A:CYS373 4.6 11.9 1.0 CA A:CYS113 4.6 12.9 1.0 H A:ILE116 4.6 14.1 1.0 S9 A:BJ8501 4.7 17.6 1.0 HG12 A:ILE116 4.8 14.9 1.0 CD1 A:LEU370 4.8 12.5 1.0 HE3 A:LYS146 4.9 16.4 0.5 SG A:CYS143 4.9 11.8 1.0 HE2 A:LYS146 4.9 17.3 0.5 HA A:CYS113 4.9 15.5 1.0 HD13 A:LEU370 4.9 15.0 1.0 CD1 A:LEU115 4.9 16.7 1.0 HG3 A:LYS146 4.9 16.1 0.5 HG21 A:THR282 4.9 20.4 1.0 CA A:CYS373 5.0 11.8 1.0 CG A:LEU115 5.0 11.3 1.0

Iron binding site 3 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:10.5 occ:1.00 FE3 A:BJ8501 0.0 10.5 1.0 S2 A:BJ8501 2.2 12.7 1.0 S1 A:BJ8501 2.3 10.9 1.0 S4 A:BJ8501 2.3 11.2 1.0 SG A:CYS373 2.4 11.9 1.0 FE2 A:BJ8501 2.6 10.3 1.0 FE4 A:BJ8501 2.7 11.6 1.0 FE1 A:BJ8501 2.7 11.9 1.0 HB2 A:CYS373 3.0 12.7 1.0 CB A:CYS373 3.2 10.6 1.0 HD2 A:TYR376 3.6 11.6 1.0 HG22 A:THR282 3.6 20.4 1.0 HA A:CYS373 3.6 14.2 1.0 HG21 A:THR282 3.8 20.4 1.0 S3 A:BJ8501 3.8 11.5 1.0 HD2 A:PRO375 3.9 11.3 1.0 CA A:CYS373 4.0 11.8 1.0 HB3 A:CYS373 4.0 12.7 1.0 CG2 A:THR282 4.2 17.0 1.0 HB3 A:CYS143 4.4 12.5 1.0 CD2 A:TYR376 4.4 9.6 1.0 HG2 A:PRO375 4.4 11.9 1.0 HE2 A:TYR376 4.5 15.3 1.0 HB2 A:PRO375 4.5 14.5 1.0 HB2 A:CYS113 4.5 12.4 1.0 SG A:CYS113 4.6 13.1 1.0 H A:TYR376 4.6 12.9 1.0 CD A:PRO375 4.7 9.4 1.0 HB2 A:TYR376 4.8 14.3 1.0 HG23 A:THR282 4.8 20.4 1.0 C A:CYS373 4.8 15.3 1.0 S9 A:BJ8501 4.9 17.6 1.0 HB A:THR282 4.9 12.2 1.0 SG A:CYS143 4.9 11.8 1.0 CE2 A:TYR376 4.9 12.8 1.0 HB2 A:CYS143 4.9 12.5 1.0 CB A:CYS143 4.9 10.4 1.0 CG A:PRO375 5.0 9.9 1.0

Iron binding site 4 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:11.6 occ:1.00 FE4 A:BJ8501 0.0 11.6 1.0 S1 A:BJ8501 2.2 10.9 1.0 S3 A:BJ8501 2.3 11.5 1.0 S2 A:BJ8501 2.4 12.7 1.0 SG A:CYS143 2.4 11.8 1.0 FE2 A:BJ8501 2.7 10.3 1.0 FE3 A:BJ8501 2.7 10.5 1.0 FE1 A:BJ8501 2.7 11.9 1.0 HB3 A:CYS143 3.0 12.5 1.0 CB A:CYS143 3.2 10.4 1.0 HE2 A:LYS146 3.3 17.3 0.5 HD11 A:ILE116 3.4 18.1 1.0 HB2 A:CYS143 3.4 12.5 1.0 HD2 A:LYS146 3.5 15.3 0.5 HG3 A:LYS146 3.5 16.1 0.5 S4 A:BJ8501 3.8 11.2 1.0 HG3 A:LYS146 3.9 15.6 0.5 O A:HOH877 4.0 13.8 1.0 CE A:LYS146 4.2 14.4 0.5 HE3 A:LYS146 4.3 17.3 0.5 HE3 A:LYS146 4.3 16.4 0.5 CD1 A:ILE116 4.3 15.1 1.0 CD A:LYS146 4.3 12.8 0.5 H A:CYS143 4.4 13.5 1.0 CG A:LYS146 4.5 13.4 0.5 HZ2 A:LYS146 4.5 18.0 0.5 HB2 A:CYS113 4.5 12.4 1.0 H A:LYS146 4.6 12.5 0.5 H A:LYS146 4.6 12.5 0.5 HG13 A:ILE116 4.6 14.9 1.0 S9 A:BJ8501 4.6 17.6 1.0 CG A:LYS146 4.6 13.0 0.5 HG2 A:PRO375 4.6 11.9 1.0 CA A:CYS143 4.6 8.7 1.0 HB3 A:CYS113 4.6 12.4 1.0 HD12 A:ILE116 4.7 18.1 1.0 HD2 A:PRO375 4.7 11.3 1.0 CE A:LYS146 4.8 13.7 0.5 HB2 A:LYS146 4.8 13.8 0.5 CD A:LYS146 4.8 13.3 0.5 SG A:CYS373 4.8 11.9 1.0 HB2 A:LYS146 4.8 13.8 0.5 SG A:CYS113 4.8 13.1 1.0 HG12 A:ILE116 4.8 14.9 1.0 CG1 A:ILE116 4.9 12.4 1.0 HA A:CYS373 4.9 14.2 1.0 CB A:CYS113 4.9 10.3 1.0 HD3 A:LYS146 4.9 15.9 0.5 HD13 A:ILE116 4.9 18.1 1.0 N A:CYS143 5.0 11.3 1.0

Iron binding site 5 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:15.9 occ:1.00 FE5 A:BJ8501 0.0 15.9 1.0 S7 A:BJ8501 2.3 17.8 1.0 S6 A:BJ8501 2.3 14.8 1.0 S8 A:BJ8501 2.4 16.1 1.0 HG A:CYS340 2.4 14.7 0.1 SG A:CYS340 2.4 15.2 0.9 FE7 A:BJ8501 2.6 15.0 1.0 HB3 A:CYS340 2.6 15.5 0.1 FE8 A:BJ8501 2.7 16.3 1.0 FE6 A:BJ8501 2.8 15.2 1.0 HB2 A:CYS340 2.9 16.3 0.9 HH A:TYR376 3.1 12.8 1.0 CB A:CYS340 3.2 12.9 0.1 SG A:CYS340 3.2 12.3 0.1 CB A:CYS340 3.3 13.6 0.9 HB2 A:CYS340 3.4 15.5 0.1 HB3 A:CYS340 3.8 16.3 0.9 HE2 A:TYR376 3.8 15.3 1.0 S5 A:BJ8501 3.9 15.2 1.0 OH A:TYR376 4.0 10.7 1.0 HG A:CYS342 4.0 18.2 0.8 HG21 A:THR142 4.3 17.6 1.0 HA A:CYS340 4.4 12.7 0.9 CA A:CYS340 4.5 10.6 0.9 CE2 A:TYR376 4.6 12.8 1.0 HB A:THR142 4.6 15.3 1.0 CA A:CYS340 4.6 10.8 0.1 HB3 A:CYS342 4.6 18.3 0.2 HG22 A:THR142 4.6 17.6 1.0 SG A:CYS308 4.7 12.7 1.0 HH21 A:ARG312 4.7 13.4 1.0 H A:CYS342 4.7 15.1 0.2 H A:CYS342 4.7 15.1 0.8 HZ3 A:LYS146 4.7 12.8 0.5 HA A:CYS340 4.7 12.9 0.1 HB2 A:CYS342 4.7 18.5 0.8 CZ A:TYR376 4.8 9.3 1.0 S9 A:BJ8501 4.8 17.6 1.0 SG A:CYS342 4.8 15.2 0.8 S2 A:BJ8501 4.8 12.7 1.0 SG A:CYS342 4.9 11.0 0.2 H A:ALA341 4.9 13.3 1.0 CG2 A:THR142 4.9 14.7 1.0 HD1 A:TYR77 4.9 23.0 1.0 SG A:CYS75 4.9 15.8 1.0

Iron binding site 6 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:15.2 occ:1.00 FE6 A:BJ8501 0.0 15.2 1.0 S8 A:BJ8501 2.3 16.1 1.0 S5 A:BJ8501 2.3 15.2 1.0 S7 A:BJ8501 2.3 17.8 1.0 SG A:CYS75 2.4 15.8 1.0 FE7 A:BJ8501 2.7 15.0 1.0 FE8 A:BJ8501 2.8 16.3 1.0 FE5 A:BJ8501 2.8 15.9 1.0 HA A:CYS75 3.2 17.4 1.0 HB2 A:CYS75 3.3 21.7 1.0 H A:VAL76 3.3 14.2 1.0 CB A:CYS75 3.3 18.1 1.0 HZ3 A:LYS146 3.4 12.8 0.5 HG21 A:THR142 3.5 17.6 1.0 HG22 A:VAL76 3.7 14.5 1.0 CA A:CYS75 3.7 14.5 1.0 HD1 A:TYR77 3.7 23.0 1.0 N A:VAL76 4.0 11.8 1.0 S6 A:BJ8501 4.0 14.8 1.0 HZ3 A:LYS146 4.1 18.0 0.5 H A:TYR77 4.2 12.2 1.0 NZ A:LYS146 4.2 10.6 0.5 HG A:CYS340 4.2 14.7 0.1 HB3 A:CYS75 4.2 21.7 1.0 HZ2 A:LYS146 4.3 12.8 0.5 HZ2 A:LYS146 4.3 18.0 0.5 C A:CYS75 4.3 15.4 1.0 HZ1 A:LYS146 4.4 12.8 0.5 CG2 A:THR142 4.4 14.7 1.0 HG1 A:THR142 4.5 18.1 1.0 NZ A:LYS146 4.5 15.0 0.5 OE2 A:GLU140 4.5 28.8 1.0 HG22 A:THR142 4.6 17.6 1.0 HG3 A:GLU140 4.6 32.9 1.0 HB2 A:TYR77 4.6 14.7 1.0 CD1 A:TYR77 4.7 19.2 1.0 HZ1 A:LYS146 4.7 18.0 0.5 CG2 A:VAL76 4.7 12.1 1.0 HG13 A:VAL76 4.7 11.8 1.0 S9 A:BJ8501 4.7 17.6 1.0 HB2 A:CYS340 4.7 16.3 0.9 O A:PHE74 4.8 16.8 1.0 SG A:CYS308 4.8 12.7 1.0 SG A:CYS340 4.9 12.3 0.1 SG A:CYS340 4.9 15.2 0.9 N A:TYR77 4.9 10.2 1.0 HB A:THR142 5.0 15.3 1.0 N A:CYS75 5.0 11.8 1.0 HG23 A:THR142 5.0 17.6 1.0

Iron binding site 7 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:15.0 occ:1.00 FE7 A:BJ8501 0.0 15.0 1.0 HG A:CYS340 2.3 14.7 0.1 SG A:CYS308 2.3 12.7 1.0 S5 A:BJ8501 2.3 15.2 1.0 S8 A:BJ8501 2.3 16.1 1.0 S6 A:BJ8501 2.4 14.8 1.0 FE5 A:BJ8501 2.6 15.9 1.0 FE6 A:BJ8501 2.7 15.2 1.0 FE8 A:BJ8501 2.7 16.3 1.0 HB2 A:CYS308 3.0 10.6 1.0 CB A:CYS308 3.1 8.8 1.0 SG A:CYS340 3.2 12.3 0.1 HB3 A:CYS308 3.3 10.6 1.0 HG22 A:VAL76 3.4 14.5 1.0 HH21 A:ARG312 3.6 13.4 1.0 HE A:ARG312 3.7 11.1 1.0 S7 A:BJ8501 3.8 17.8 1.0 HB2 A:CYS340 3.9 16.3 0.9 H A:VAL76 4.0 14.2 1.0 HG13 A:VAL76 4.0 11.8 1.0 HH A:TYR376 4.1 12.8 1.0 HG21 A:VAL76 4.2 14.5 1.0 CG2 A:VAL76 4.2 12.1 1.0 HB3 A:CYS340 4.4 15.5 0.1 NH2 A:ARG312 4.4 11.2 1.0 HG3 A:PRO283 4.4 18.4 1.0 CB A:CYS340 4.4 12.9 0.1 HD3 A:PRO283 4.5 13.8 1.0 HG11 A:VAL338 4.5 16.2 1.0 NE A:ARG312 4.5 9.2 1.0 CA A:CYS308 4.6 11.1 1.0 HA A:CYS75 4.6 17.4 1.0 H A:CYS308 4.7 8.8 1.0 CB A:CYS340 4.7 13.6 0.9 SG A:CYS340 4.7 15.2 0.9 HB2 A:CYS340 4.7 15.5 0.1 CG1 A:VAL76 4.7 9.8 1.0 HG11 A:VAL76 4.7 11.8 1.0 S9 A:BJ8501 4.7 17.6 1.0 OH A:TYR376 4.7 10.7 1.0 HA A:CYS308 4.8 13.3 1.0 N A:VAL76 4.8 11.8 1.0 SG A:CYS75 4.8 15.8 1.0 HG23 A:VAL76 4.9 14.5 1.0 CZ A:ARG312 4.9 12.2 1.0 HD1 A:TYR77 4.9 23.0 1.0 HH22 A:ARG312 5.0 13.4 1.0 HG12 A:VAL338 5.0 16.2 1.0

Iron binding site 8 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:16.3 occ:1.00 FE8 A:BJ8501 0.0 16.3 1.0 S9 A:BJ8501 2.2 17.6 1.0 S6 A:BJ8501 2.3 14.8 1.0 S7 A:BJ8501 2.3 17.8 1.0 S5 A:BJ8501 2.4 15.2 1.0 FE5 A:BJ8501 2.7 15.9 1.0 FE7 A:BJ8501 2.7 15.0 1.0 FE6 A:BJ8501 2.8 15.2 1.0 HZ2 A:LYS146 3.1 18.0 0.5 HZ3 A:LYS146 3.4 12.8 0.5 HG3 A:PRO283 3.6 18.4 1.0 FE1 A:BJ8501 3.8 11.9 1.0 NZ A:LYS146 3.8 15.0 0.5 HZ2 A:LYS146 3.8 12.8 0.5 HZ1 A:LYS146 3.9 18.0 0.5 HZ3 A:LYS146 3.9 18.0 0.5 S8 A:BJ8501 4.0 16.1 1.0 NZ A:LYS146 4.0 10.6 0.5 HD3 A:PRO283 4.1 13.8 1.0 HG A:CYS340 4.1 14.7 0.1 S2 A:BJ8501 4.3 12.7 1.0 HB2 A:CYS308 4.4 10.6 1.0 HE2 A:LYS146 4.4 17.3 0.5 HA A:CYS75 4.4 17.4 1.0 CG A:PRO283 4.4 15.3 1.0 HD2 A:PRO283 4.5 13.8 1.0 CD A:PRO283 4.5 11.5 1.0 HE2 A:TYR376 4.6 15.3 1.0 HG2 A:PRO283 4.7 18.4 1.0 HZ1 A:LYS146 4.7 12.8 0.5 HH A:TYR376 4.7 12.8 1.0 CE A:LYS146 4.8 14.4 0.5 HH21 A:ARG312 4.8 13.4 1.0 SG A:CYS308 4.8 12.7 1.0 O A:PHE74 4.9 16.8 1.0 HB2 A:CYS75 4.9 21.7 1.0 CB A:CYS308 4.9 8.8 1.0 HB3 A:CYS308 5.0 10.6 1.0 SG A:CYS75 5.0 15.8 1.0

Iron binding site 9 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:16.4 occ:1.00 FE1 B:BJ8501 0.0 16.4 1.0 S4 B:BJ8501 2.2 16.5 1.0 S9 B:BJ8501 2.2 21.5 1.0 S3 B:BJ8501 2.3 14.9 1.0 S2 B:BJ8501 2.3 17.0 1.0 FE4 B:BJ8501 2.7 13.3 1.0 FE2 B:BJ8501 2.7 14.5 1.0 FE3 B:BJ8501 2.7 15.5 1.0 HD13 B:LEU115 3.6 20.4 1.0 FE8 B:BJ8501 3.8 21.9 1.0 S1 B:BJ8501 3.9 15.8 1.0 HD2 B:LYS146 4.0 23.8 1.0 HD2 B:PRO283 4.0 21.8 1.0 HZ2 B:LYS146 4.1 33.9 1.0 HE3 B:LYS146 4.2 35.7 1.0 HD22 B:LEU115 4.4 26.0 1.0 CD1 B:LEU115 4.5 17.0 1.0 HG2 B:PRO283 4.6 24.2 1.0 HG22 B:THR282 4.6 20.4 1.0 S7 B:BJ8501 4.6 20.4 1.0 SG B:CYS143 4.7 14.7 1.0 HB B:THR282 4.7 16.4 1.0 CE B:LYS146 4.7 29.7 1.0 NZ B:LYS146 4.8 28.3 1.0 CD B:LYS146 4.8 19.8 1.0 HB3 B:LEU115 4.8 17.2 1.0 CD B:PRO283 4.8 18.2 1.0 S6 B:BJ8501 4.8 18.0 1.0 HD11 B:LEU115 4.8 20.4 1.0 HG3 B:PRO283 4.8 24.2 1.0 HE2 B:TYR376 4.9 19.6 1.0 SG B:CYS113 4.9 18.7 1.0 CG B:PRO283 4.9 20.2 1.0

Iron binding site 10 out of 40 in the Mgadpnp-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Mgadpnp-Bound Dccp:Dccp-R Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:14.5 occ:1.00 FE2 B:BJ8501 0.0 14.5 1.0 S3 B:BJ8501 2.2 14.9 1.0 S4 B:BJ8501 2.3 16.5 1.0 S1 B:BJ8501 2.4 15.8 1.0 SG B:CYS113 2.4 18.7 1.0 FE3 B:BJ8501 2.6 15.5 1.0 FE4 B:BJ8501 2.7 13.3 1.0 FE1 B:BJ8501 2.7 16.4 1.0 HB2 B:CYS113 3.1 18.7 1.0 CB B:CYS113 3.2 15.6 1.0 HB3 B:CYS113 3.2 18.7 1.0 HB3 B:LEU115 3.5 17.2 1.0 HB2 B:CYS373 3.6 18.0 1.0 HG13 B:ILE116 3.7 16.6 1.0 HD11 B:ILE116 3.8 18.0 1.0 S2 B:BJ8501 3.9 17.0 1.0 HD13 B:LEU115 4.0 20.4 1.0 HD12 B:LEU370 4.0 22.2 1.0 HD22 B:LEU115 4.2 26.0 1.0 CB B:LEU115 4.3 14.3 1.0 HB2 B:LEU115 4.3 17.2 1.0 HA B:CYS373 4.4 15.7 1.0 HD12 B:ILE116 4.4 18.0 1.0 CD1 B:ILE116 4.4 15.0 1.0 CB B:CYS373 4.4 15.0 1.0 CG1 B:ILE116 4.5 13.9 1.0 HB2 B:LEU370 4.6 16.4 1.0 SG B:CYS373 4.6 18.3 1.0 H B:ILE116 4.6 15.2 1.0 CA B:CYS113 4.6 16.0 1.0 S9 B:BJ8501 4.7 21.5 1.0 H B:LEU115 4.7 16.7 1.0 HG12 B:ILE116 4.8 16.6 1.0 CD1 B:LEU115 4.8 17.0 1.0 SG B:CYS143 4.8 14.7 1.0 CD1 B:LEU370 4.9 18.5 1.0 HA B:CYS113 4.9 19.2 1.0 CG B:LEU115 4.9 17.1 1.0 CA B:CYS373 5.0 13.0 1.0

J.H.Jeoung, S.Nicklisch, H.Dobbek. Structural Basis For Coupled Atp-Driven Electron Transfer in the Double-Cubane Cluster Protein. Proc.Natl.Acad.Sci.Usa V. 119 76119 2022.
ISSN: ESSN 1091-6490
PubMed: 35905315
DOI: 10.1073/PNAS.2203576119