Iron in PDB 7zc6: Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Iron atom in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum (pdb code 7zc6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 29 binding sites of Iron where determined in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum, PDB code: 7zc6:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe200 b:66.5 occ:1.00 SG A:CYS25 2.3 68.2 1.0 SG E:CYS26 2.3 72.8 1.0 SG A:CYS113 2.4 87.0 1.0 SG E:CYS109 2.5 74.9 1.0 CB A:CYS113 3.0 87.0 1.0 CB E:CYS26 3.1 72.8 1.0 CB A:CYS25 3.2 68.2 1.0 CB E:CYS109 3.6 74.9 1.0 N A:CYS25 4.0 68.2 1.0 N A:CYS113 4.1 87.0 1.0 CA A:CYS113 4.2 87.0 1.0 CA A:CYS25 4.2 68.2 1.0 N E:CYS26 4.3 72.8 1.0 CA E:CYS26 4.4 72.8 1.0 N E:CYS109 4.4 74.9 1.0 CA E:CYS109 4.7 74.9 1.0 O E:VAL107 4.7 88.1 1.0 N A:ILE24 4.9 62.3 1.0 N E:GLY24 5.0 70.2 1.0 CA E:GLY24 5.0 70.2 1.0

Iron binding site 2 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:80.3 occ:1.00 FE1 B:SF4300 0.0 80.3 1.0 SG B:CYS177 2.2 70.1 1.0 S2 B:SF4300 2.2 80.3 1.0 S3 B:SF4300 2.2 80.3 1.0 S4 B:SF4300 2.2 80.3 1.0 FE2 B:SF4300 2.8 80.3 1.0 FE4 B:SF4300 2.8 80.3 1.0 FE3 B:SF4300 2.8 80.3 1.0 CB B:CYS177 3.0 70.1 1.0 S1 B:SF4300 3.8 80.3 1.0 N B:CYS177 4.0 70.1 1.0 CB B:ALA101 4.0 92.5 1.0 CA B:CYS177 4.1 70.1 1.0 N B:GLY175 4.2 72.0 1.0 CA B:GLY175 4.6 72.0 1.0 SG B:CYS171 4.7 101.1 1.0 SG B:CYS174 4.8 80.5 1.0 N B:ALA176 4.9 70.0 1.0 C B:GLY175 5.0 72.0 1.0

Iron binding site 3 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:80.3 occ:1.00 FE2 B:SF4300 0.0 80.3 1.0 SG B:CYS174 2.2 80.5 1.0 S4 B:SF4300 2.2 80.3 1.0 S1 B:SF4300 2.3 80.3 1.0 S3 B:SF4300 2.3 80.3 1.0 FE4 B:SF4300 2.8 80.3 1.0 FE1 B:SF4300 2.8 80.3 1.0 FE3 B:SF4300 2.8 80.3 1.0 CB B:CYS174 3.0 80.5 1.0 N B:CYS174 3.1 80.5 1.0 N B:GLY175 3.1 72.0 1.0 CA B:CYS174 3.3 80.5 1.0 C B:CYS174 3.5 80.5 1.0 S2 B:SF4300 3.8 80.3 1.0 OG1 B:THR172 4.0 91.6 1.0 C B:GLY173 4.1 85.2 1.0 CA B:GLY175 4.3 72.0 1.0 N B:ALA176 4.5 70.0 1.0 N B:GLY173 4.5 85.2 1.0 O B:CYS174 4.5 80.5 1.0 SG B:CYS177 4.7 70.1 1.0 SG B:CYS171 4.7 101.1 1.0 CA B:GLY173 4.7 85.2 1.0 CD2 B:PHE154 4.8 78.8 1.0 SG B:CYS152 4.8 73.2 1.0 CE2 B:PHE154 4.8 78.8 1.0 C B:GLY175 4.9 72.0 1.0 O B:GLY173 5.0 85.2 1.0 N B:THR172 5.0 91.6 1.0

Iron binding site 4 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:80.3 occ:1.00 FE3 B:SF4300 0.0 80.3 1.0 S4 B:SF4300 2.2 80.3 1.0 S1 B:SF4300 2.2 80.3 1.0 S2 B:SF4300 2.2 80.3 1.0 SG B:CYS171 2.3 101.1 1.0 FE1 B:SF4300 2.8 80.3 1.0 FE2 B:SF4300 2.8 80.3 1.0 FE4 B:SF4300 2.8 80.3 1.0 CB B:CYS171 3.2 101.1 1.0 CA B:CYS171 3.8 101.1 1.0 N B:THR172 3.9 91.6 1.0 S3 B:SF4300 3.9 80.3 1.0 N B:GLY173 3.9 85.2 1.0 C B:CYS171 4.2 101.1 1.0 N B:CYS174 4.3 80.5 1.0 CB B:ALA101 4.4 92.5 1.0 CA B:GLY173 4.5 85.2 1.0 OG1 B:THR172 4.6 91.6 1.0 SG B:CYS152 4.6 73.2 1.0 SG B:CYS174 4.8 80.5 1.0 C B:GLY173 4.8 85.2 1.0 C B:THR172 4.8 91.6 1.0 SG B:CYS177 4.8 70.1 1.0 CA B:THR172 4.8 91.6 1.0 CB B:ALA156 5.0 82.0 1.0 N B:ALA101 5.0 92.5 1.0

Iron binding site 5 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:80.3 occ:1.00 FE4 B:SF4300 0.0 80.3 1.0 S2 B:SF4300 2.2 80.3 1.0 S1 B:SF4300 2.2 80.3 1.0 S3 B:SF4300 2.3 80.3 1.0 SG B:CYS152 2.3 73.2 1.0 FE2 B:SF4300 2.8 80.3 1.0 CB B:CYS152 2.8 73.2 1.0 FE1 B:SF4300 2.8 80.3 1.0 FE3 B:SF4300 2.8 80.3 1.0 CA B:CYS152 3.8 73.2 1.0 S4 B:SF4300 3.8 80.3 1.0 SG B:CYS174 4.0 80.5 1.0 CD2 B:PHE154 4.6 78.8 1.0 N B:CYS152 4.8 73.2 1.0 SG B:CYS177 4.8 70.1 1.0 C B:CYS152 4.8 73.2 1.0 CB B:CYS177 4.9 70.1 1.0

Iron binding site 6 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:51.8 occ:1.00 FE1 B:SF4301 0.0 51.8 1.0 SG B:CYS181 2.2 60.4 1.0 S2 B:SF4301 2.2 51.8 1.0 S4 B:SF4301 2.3 51.8 1.0 S3 B:SF4301 2.3 51.8 1.0 FE2 B:SF4301 2.7 51.8 1.0 FE4 B:SF4301 2.9 51.8 1.0 FE3 B:SF4301 2.9 51.8 1.0 CB B:CYS181 3.3 60.4 1.0 S1 B:SF4301 3.8 51.8 1.0 CB B:CYS142 4.0 52.5 1.0 SG B:CYS142 4.2 52.5 1.0 CA B:CYS181 4.3 60.4 1.0 CG2 B:VAL185 4.5 65.6 1.0 CB B:VAL185 4.5 65.6 1.0 CG1 B:ILE186 4.8 72.6 1.0 SG B:CYS124 4.9 58.0 1.0 CA B:CYS142 4.9 52.5 1.0 SG B:CYS148 4.9 65.9 1.0 N B:VAL185 5.0 65.6 1.0

Iron binding site 7 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:51.8 occ:1.00 FE2 B:SF4301 0.0 51.8 1.0 S1 B:SF4301 2.2 51.8 1.0 S4 B:SF4301 2.2 51.8 1.0 S3 B:SF4301 2.3 51.8 1.0 SG B:CYS124 2.3 58.0 1.0 FE1 B:SF4301 2.7 51.8 1.0 FE4 B:SF4301 2.8 51.8 1.0 FE3 B:SF4301 2.8 51.8 1.0 CB B:CYS124 3.1 58.0 1.0 SG B:CYS181 3.6 60.4 1.0 S2 B:SF4301 3.8 51.8 1.0 CB B:CYS181 4.1 60.4 1.0 CA B:CYS181 4.1 60.4 1.0 SG B:CYS148 4.5 65.9 1.0 N B:CYS148 4.5 65.9 1.0 OG B:SER147 4.6 59.0 1.0 CB B:CYS148 4.6 65.9 1.0 CA B:CYS124 4.6 58.0 1.0 CD B:PRO182 4.6 60.2 1.0 N B:SER147 4.8 59.0 1.0 N B:CYS181 4.8 60.4 1.0 CB B:SER147 4.9 59.0 1.0 SG B:CYS142 4.9 52.5 1.0 O B:ILE180 5.0 55.8 1.0

Iron binding site 8 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:51.8 occ:1.00 FE3 B:SF4301 0.0 51.8 1.0 S4 B:SF4301 2.2 51.8 1.0 SG B:CYS148 2.2 65.9 1.0 S2 B:SF4301 2.2 51.8 1.0 S1 B:SF4301 2.3 51.8 1.0 FE4 B:SF4301 2.8 51.8 1.0 FE2 B:SF4301 2.8 51.8 1.0 FE1 B:SF4301 2.9 51.8 1.0 CB B:CYS148 3.2 65.9 1.0 S3 B:SF4301 3.9 51.8 1.0 N B:CYS148 4.1 65.9 1.0 CB B:ALA164 4.2 72.3 1.0 CA B:CYS148 4.3 65.9 1.0 SG B:CYS142 4.5 52.5 1.0 SG B:CYS181 4.9 60.4 1.0 SG B:CYS124 5.0 58.0 1.0

Iron binding site 9 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:51.8 occ:1.00 FE4 B:SF4301 0.0 51.8 1.0 SG B:CYS142 2.1 52.5 1.0 S1 B:SF4301 2.2 51.8 1.0 S3 B:SF4301 2.2 51.8 1.0 S2 B:SF4301 2.3 51.8 1.0 FE3 B:SF4301 2.8 51.8 1.0 FE2 B:SF4301 2.8 51.8 1.0 FE1 B:SF4301 2.9 51.8 1.0 CB B:CYS142 3.2 52.5 1.0 S4 B:SF4301 3.8 51.8 1.0 CB B:CYS124 4.0 58.0 1.0 CA B:CYS142 4.1 52.5 1.0 N B:GLY144 4.2 51.8 1.0 N B:LEU143 4.2 54.9 1.0 SG B:CYS124 4.4 58.0 1.0 C B:CYS142 4.5 52.5 1.0 SG B:CYS181 4.5 60.4 1.0 N B:GLY146 4.7 63.1 1.0 CA B:GLY144 4.8 51.8 1.0 SG B:CYS148 4.8 65.9 1.0 N B:LEU145 4.8 53.8 1.0

Iron binding site 10 out of 29 in the Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Na+ - Translocating Ferredoxin: Nad+ Reductase (Rnf) of C. Tetanomorphum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:69.6 occ:1.00 FE1 B:SF4302 0.0 69.6 1.0 S2 B:SF4302 2.2 69.6 1.0 S3 B:SF4302 2.3 69.6 1.0 S4 B:SF4302 2.3 69.6 1.0 SG B:CYS138 2.4 65.4 1.0 FE2 B:SF4302 2.8 69.6 1.0 FE4 B:SF4302 2.8 69.6 1.0 FE3 B:SF4302 2.8 69.6 1.0 CB B:CYS138 3.4 65.4 1.0 S1 B:SF4302 3.9 69.6 1.0 N B:GLY141 3.9 65.2 1.0 SG B:CYS212 4.1 82.3 1.0 CA B:GLY141 4.1 65.2 1.0 C B:PHE140 4.5 70.0 1.0 SG B:CYS199 4.6 83.1 1.0 CB B:CYS199 4.7 83.1 1.0 CA B:CYS138 4.8 65.4 1.0 N B:ASN200 4.9 82.7 1.0 SG B:CYS105 4.9 77.7 1.0

S.Vitt, S.Prinz, M.Eisinger, U.Ermler, W.Buckel. Purification and Structural Characterization of the Na + -Translocating Ferredoxin: Nad + Reductase (Rnf) Complex of Clostridium Tetanomorphum. Nat Commun V. 13 6315 2022.
ISSN: ESSN 2041-1723
PubMed: 36274063
DOI: 10.1038/S41467-022-34007-Z