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Iron in PDB 7zmg: Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)

Enzymatic activity of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)

All present enzymatic activity of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1):
3.6.4.12; 7.1.1.2;

Other elements in 7zmg:

The structure of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) (pdb code 7zmg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1), PDB code: 7zmg:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7zmg

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Iron binding site 1 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:8.0
occ:1.00
 FE1 A:FES801 0.0 8.0 1.0
SG A:CYS87 2.2 1.0 1.0
SG A:CYS101 2.2 3.2 1.0
S1 A:FES801 2.2 8.0 1.0
S2 A:FES801 2.2 8.0 1.0
FE2 A:FES801 2.9 8.0 1.0
CB A:CYS101 3.2 3.2 1.0
CB A:CYS87 3.4 1.0 1.0
N A:CYS101 3.9 3.2 1.0
CA A:CYS101 4.2 3.2 1.0
SG A:CYS73 4.2 8.0 1.0
CB A:ALA99 4.3 5.6 1.0
N A:CYS87 4.4 1.0 1.0
O A:HOH1154 4.4 8.0 1.0
CA A:CYS87 4.5 1.0 1.0
CA A:GLY82 4.6 6.0 1.0
SG A:CYS84 4.7 8.0 1.0
CA A:ALA99 4.8 5.6 1.0
N A:SER100 4.8 5.8 1.0
C A:ALA99 4.8 5.6 1.0
CB A:TYR74 4.9 3.2 1.0

Iron binding site 2 out of 28 in 7zmg

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Iron binding site 2 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:8.0
occ:1.00
 FE2 A:FES801 0.0 8.0 1.0
SG A:CYS73 2.2 8.0 1.0
SG A:CYS84 2.2 8.0 1.0
S1 A:FES801 2.2 8.0 1.0
S2 A:FES801 2.2 8.0 1.0
FE1 A:FES801 2.9 8.0 1.0
CB A:CYS84 3.3 8.0 1.0
CB A:CYS73 3.6 8.0 1.0
N A:CYS84 3.6 8.0 1.0
N A:CYS73 3.7 8.0 1.0
N A:ARG85 3.8 4.2 1.0
CA A:CYS84 3.9 8.0 1.0
CA A:CYS73 4.1 8.0 1.0
N A:TYR74 4.2 3.2 1.0
C A:CYS84 4.3 8.0 1.0
SG A:CYS101 4.3 3.2 1.0
N A:ASN83 4.4 7.5 1.0
N A:TYR72 4.4 8.0 1.0
O A:HOH1154 4.4 8.0 1.0
N A:MET86 4.6 8.0 1.0
C A:CYS73 4.6 8.0 1.0
SG A:CYS87 4.7 1.0 1.0
CA A:GLY82 4.7 6.0 1.0
C A:GLY82 4.7 6.0 1.0
C A:ASN83 4.7 7.5 1.0
C A:TYR72 4.8 8.0 1.0
N A:GLY82 4.9 6.0 1.0
CA A:ARG85 4.9 4.2 1.0
N A:CYS87 5.0 1.0 1.0

Iron binding site 3 out of 28 in 7zmg

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Iron binding site 3 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:8.0
occ:1.00
 FE1 A:SF4802 0.0 8.0 1.0
SG A:CYS137 2.2 8.0 1.0
S4 A:SF4802 2.3 8.0 1.0
S2 A:SF4802 2.3 8.0 1.0
S3 A:SF4802 2.3 8.0 1.0
FE3 A:SF4802 2.7 8.0 1.0
FE2 A:SF4802 2.8 8.0 1.0
FE4 A:SF4802 2.8 8.0 1.0
CB A:CYS137 3.3 8.0 1.0
CA A:CYS137 3.5 8.0 1.0
NE2 A:GLN149 3.6 8.0 1.0
CG A:GLN149 3.8 8.0 1.0
S1 A:SF4802 3.9 8.0 1.0
CD A:GLN149 4.0 8.0 1.0
N A:CYS137 4.0 8.0 1.0
CE C:MET411 4.3 5.8 1.0
NE2 A:HIS133 4.7 8.0 1.0
SG A:CYS146 4.7 8.0 1.0
CG1 C:ILE415 4.8 8.0 1.0
CB A:CYS140 4.8 4.9 1.0
C A:ASP136 4.8 8.0 1.0
SG A:CYS140 4.8 4.9 1.0
OE1 A:GLN149 4.9 8.0 1.0
C A:CYS137 5.0 8.0 1.0

Iron binding site 4 out of 28 in 7zmg

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Iron binding site 4 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:8.0
occ:1.00
 FE2 A:SF4802 0.0 8.0 1.0
SG A:CYS146 2.2 8.0 1.0
S4 A:SF4802 2.3 8.0 1.0
S1 A:SF4802 2.3 8.0 1.0
S3 A:SF4802 2.3 8.0 1.0
FE3 A:SF4802 2.8 8.0 1.0
FE1 A:SF4802 2.8 8.0 1.0
FE4 A:SF4802 2.8 8.0 1.0
CB A:CYS146 3.5 8.0 1.0
CG A:GLN149 3.8 8.0 1.0
S2 A:SF4802 3.9 8.0 1.0
CD A:GLN149 4.4 8.0 1.0
CB A:LEU148 4.4 8.0 1.0
NE2 A:HIS133 4.6 8.0 1.0
CB A:GLN142 4.6 5.4 1.0
N A:GLN149 4.6 8.0 1.0
CD2 A:LEU148 4.7 8.0 1.0
CB A:GLN149 4.7 8.0 1.0
CA A:CYS146 4.8 8.0 1.0
NE2 A:GLN149 4.8 8.0 1.0
SG A:CYS140 4.8 4.9 1.0
CG A:GLN142 4.8 5.4 1.0
SG A:CYS137 4.8 8.0 1.0
OE1 A:GLN149 4.9 8.0 1.0
CG A:LEU148 4.9 8.0 1.0

Iron binding site 5 out of 28 in 7zmg

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Iron binding site 5 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:8.0
occ:1.00
 FE3 A:SF4802 0.0 8.0 1.0
NE2 A:HIS133 2.1 8.0 1.0
S2 A:SF4802 2.3 8.0 1.0
S4 A:SF4802 2.3 8.0 1.0
S1 A:SF4802 2.3 8.0 1.0
FE1 A:SF4802 2.7 8.0 1.0
FE2 A:SF4802 2.8 8.0 1.0
FE4 A:SF4802 2.8 8.0 1.0
CD2 A:HIS133 3.0 8.0 1.0
CE1 A:HIS133 3.2 8.0 1.0
S3 A:SF4802 3.9 8.0 1.0
CG A:HIS133 4.1 8.0 1.0
CD2 A:LEU148 4.2 8.0 1.0
ND1 A:HIS133 4.2 8.0 1.0
CE C:MET411 4.5 5.8 1.0
SG A:CYS137 4.6 8.0 1.0
CG A:ARG186 4.7 5.5 1.0
O A:PRO134 4.7 3.6 1.0
SG A:CYS140 4.8 4.9 1.0
SG A:CYS146 4.8 8.0 1.0

Iron binding site 6 out of 28 in 7zmg

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Iron binding site 6 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:8.0
occ:1.00
 FE4 A:SF4802 0.0 8.0 1.0
SG A:CYS140 2.2 4.9 1.0
S1 A:SF4802 2.3 8.0 1.0
S2 A:SF4802 2.3 8.0 1.0
S3 A:SF4802 2.3 8.0 1.0
FE1 A:SF4802 2.8 8.0 1.0
FE3 A:SF4802 2.8 8.0 1.0
FE2 A:SF4802 2.8 8.0 1.0
CB A:CYS140 3.0 4.9 1.0
S4 A:SF4802 3.9 8.0 1.0
CB A:GLN142 4.2 5.4 1.0
CA A:CYS137 4.5 8.0 1.0
CA A:CYS140 4.5 4.9 1.0
N A:GLY240 4.5 8.0 1.0
N A:GLY143 4.6 8.0 1.0
SG A:CYS146 4.7 8.0 1.0
NE2 A:HIS133 4.7 8.0 1.0
SG A:CYS137 4.7 8.0 1.0
CG A:ARG186 4.8 5.5 1.0
N A:CYS137 4.8 8.0 1.0
CD A:ARG186 4.8 5.5 1.0
N A:GLN142 4.8 5.4 1.0
CA A:GLN142 4.9 5.4 1.0
C A:CYS140 5.0 4.9 1.0
CA A:GLY240 5.0 8.0 1.0

Iron binding site 7 out of 28 in 7zmg

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Iron binding site 7 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:8.0
occ:1.00
 FE1 A:SF4803 0.0 8.0 1.0
SG A:CYS193 2.2 8.0 1.0
S4 A:SF4803 2.3 8.0 1.0
S2 A:SF4803 2.3 8.0 1.0
S3 A:SF4803 2.3 8.0 1.0
FE4 A:SF4803 2.8 8.0 1.0
FE3 A:SF4803 2.8 8.0 1.0
FE2 A:SF4803 2.9 8.0 1.0
CB A:CYS193 3.5 8.0 1.0
S1 A:SF4803 3.9 8.0 1.0
N A:CYS193 4.1 8.0 1.0
CD1 A:LEU242 4.2 3.7 1.0
CG2 A:ILE217 4.3 3.8 1.0
CG1 A:ILE217 4.3 3.8 1.0
CA A:CYS193 4.4 8.0 1.0
SG A:CYS237 4.7 3.7 1.0
CB A:ILE217 4.7 3.8 1.0
SG A:CYS187 4.7 8.0 1.0
SG A:CYS190 4.7 8.0 1.0
N A:ARG192 4.8 8.0 1.0
CG A:LEU242 4.9 3.7 1.0
N A:THR191 4.9 8.0 1.0

Iron binding site 8 out of 28 in 7zmg

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Iron binding site 8 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:8.0
occ:1.00
 FE2 A:SF4803 0.0 8.0 1.0
SG A:CYS187 2.2 8.0 1.0
S1 A:SF4803 2.3 8.0 1.0
S3 A:SF4803 2.3 8.0 1.0
S4 A:SF4803 2.4 8.0 1.0
FE4 A:SF4803 2.8 8.0 1.0
FE3 A:SF4803 2.9 8.0 1.0
FE1 A:SF4803 2.9 8.0 1.0
CB A:CYS187 3.3 8.0 1.0
CA A:CYS187 3.7 8.0 1.0
N A:HIS189 3.8 8.0 1.0
N A:ILE188 3.8 8.0 1.0
S2 A:SF4803 3.9 8.0 1.0
C A:CYS187 4.1 8.0 1.0
CA A:HIS189 4.3 8.0 1.0
N A:CYS190 4.7 8.0 1.0
C A:ILE188 4.7 8.0 1.0
CG1 A:ILE217 4.8 3.8 1.0
CD1 A:ILE217 4.8 3.8 1.0
CB A:ALA241 4.8 8.0 1.0
SG A:CYS237 4.9 3.7 1.0
CE A:MET184 4.9 4.2 1.0
CA A:ILE188 4.9 8.0 1.0
SG A:CYS190 4.9 8.0 1.0
CG2 A:VAL239 4.9 7.4 1.0
CB A:ILE217 4.9 3.8 1.0
SG A:CYS193 5.0 8.0 1.0
O A:HOH1004 5.0 8.0 1.0
N A:CYS187 5.0 8.0 1.0

Iron binding site 9 out of 28 in 7zmg

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Iron binding site 9 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:8.0
occ:1.00
 FE3 A:SF4803 0.0 8.0 1.0
SG A:CYS190 2.2 8.0 1.0
S2 A:SF4803 2.3 8.0 1.0
S1 A:SF4803 2.3 8.0 1.0
S4 A:SF4803 2.3 8.0 1.0
FE4 A:SF4803 2.8 8.0 1.0
FE1 A:SF4803 2.8 8.0 1.0
FE2 A:SF4803 2.9 8.0 1.0
CB A:CYS190 3.6 8.0 1.0
N A:CYS190 3.6 8.0 1.0
N A:THR191 3.8 8.0 1.0
S3 A:SF4803 3.9 8.0 1.0
CA A:CYS190 4.0 8.0 1.0
N A:ARG192 4.2 8.0 1.0
CD A:PRO238 4.2 2.1 1.0
C A:CYS190 4.3 8.0 1.0
N A:HIS189 4.5 8.0 1.0
SG A:CYS237 4.6 3.7 1.0
C A:HIS189 4.6 8.0 1.0
SG A:CYS193 4.6 8.0 1.0
CG A:PRO238 4.7 2.1 1.0
CA A:THR191 4.7 8.0 1.0
CA A:HIS189 4.8 8.0 1.0
C A:THR191 4.8 8.0 1.0
CB A:ARG192 4.9 8.0 1.0
SG A:CYS187 4.9 8.0 1.0
N A:CYS193 4.9 8.0 1.0

Iron binding site 10 out of 28 in 7zmg

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Iron binding site 10 out of 28 in the Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Structure of Mitochondrial Complex I From Chaetomium Thermophilum (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:8.0
occ:1.00
 FE4 A:SF4803 0.0 8.0 1.0
SG A:CYS237 2.2 3.7 1.0
S3 A:SF4803 2.3 8.0 1.0
S1 A:SF4803 2.3 8.0 1.0
S2 A:SF4803 2.3 8.0 1.0
FE2 A:SF4803 2.8 8.0 1.0
FE3 A:SF4803 2.8 8.0 1.0
FE1 A:SF4803 2.8 8.0 1.0
CB A:CYS237 3.5 3.7 1.0
S4 A:SF4803 3.9 8.0 1.0
CG2 A:VAL239 3.9 7.4 1.0
CA A:CYS237 4.1 3.7 1.0
CB A:ALA241 4.1 8.0 1.0
CD A:PRO238 4.4 2.1 1.0
CD1 A:LEU242 4.5 3.7 1.0
CG A:LEU242 4.6 3.7 1.0
SG A:CYS190 4.7 8.0 1.0
SG A:CYS193 4.7 8.0 1.0
SG A:CYS187 4.8 8.0 1.0
C A:CYS237 4.9 3.7 1.0
N A:PRO238 5.0 2.1 1.0

Reference:

E.Laube, J.Meier-Credo, J.D.Langer, W.Kuhlbrandt. Conformational Changes in Mitochondrial Complex I of the Thermophilic Eukaryote Chaetomium Thermophilum. Sci Adv V. 8 C9952 2022.
ISSN: ESSN 2375-2548
PubMed: 36427319
DOI: 10.1126/SCIADV.ADC9952
Page generated: Fri Aug 9 15:04:48 2024

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