Iron in PDB 7zof: Streptavidin Iron-Porphyrin
Protein crystallography data
The structure of Streptavidin Iron-Porphyrin, PDB code: 7zof
was solved by
N.V.Igareta,
T.R.Ward,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.76 /
1.74
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
115.251,
89.439,
57.167,
90,
97.54,
90
|
R / Rfree (%)
|
17 /
20.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Streptavidin Iron-Porphyrin
(pdb code 7zof). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Streptavidin Iron-Porphyrin, PDB code: 7zof:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7zof
Go back to
Iron Binding Sites List in 7zof
Iron binding site 1 out
of 2 in the Streptavidin Iron-Porphyrin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Streptavidin Iron-Porphyrin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:40.2
occ:0.80
|
N6
|
A:JLL201
|
2.0
|
54.3
|
1.0
|
N5
|
A:JLL201
|
2.0
|
55.6
|
1.0
|
N4
|
A:JLL201
|
2.1
|
42.1
|
1.0
|
N1
|
A:IMD202
|
2.1
|
45.1
|
1.0
|
N7
|
A:JLL201
|
2.1
|
56.1
|
1.0
|
N1
|
C:IMD201
|
2.1
|
69.2
|
1.0
|
C23
|
A:JLL201
|
3.0
|
56.9
|
1.0
|
C2
|
C:IMD201
|
3.0
|
69.4
|
1.0
|
C20
|
A:JLL201
|
3.0
|
59.6
|
1.0
|
C2
|
A:IMD202
|
3.0
|
40.4
|
1.0
|
C27
|
A:JLL201
|
3.1
|
64.6
|
1.0
|
C15
|
A:JLL201
|
3.1
|
45.4
|
1.0
|
C32
|
A:JLL201
|
3.1
|
61.7
|
1.0
|
C24
|
A:JLL201
|
3.1
|
57.9
|
1.0
|
C29
|
A:JLL201
|
3.1
|
57.7
|
1.0
|
C5
|
C:IMD201
|
3.1
|
71.2
|
1.0
|
C5
|
A:IMD202
|
3.1
|
43.5
|
1.0
|
C16
|
A:JLL201
|
3.2
|
47.0
|
1.0
|
C28
|
A:JLL201
|
3.4
|
58.1
|
1.0
|
C33
|
A:JLL201
|
3.4
|
64.1
|
1.0
|
C14
|
A:JLL201
|
3.5
|
52.6
|
1.0
|
C19
|
A:JLL201
|
3.5
|
50.5
|
1.0
|
N3
|
C:IMD201
|
4.2
|
75.1
|
1.0
|
N3
|
A:IMD202
|
4.2
|
46.5
|
1.0
|
C4
|
C:IMD201
|
4.2
|
70.7
|
1.0
|
C21
|
A:JLL201
|
4.2
|
67.1
|
1.0
|
C22
|
A:JLL201
|
4.2
|
65.8
|
1.0
|
C4
|
A:IMD202
|
4.2
|
44.1
|
1.0
|
C31
|
A:JLL201
|
4.3
|
62.3
|
1.0
|
C30
|
A:JLL201
|
4.3
|
59.6
|
1.0
|
C18
|
A:JLL201
|
4.3
|
47.6
|
1.0
|
C26
|
A:JLL201
|
4.3
|
59.1
|
1.0
|
C25
|
A:JLL201
|
4.3
|
59.1
|
1.0
|
C17
|
A:JLL201
|
4.3
|
42.9
|
1.0
|
C13
|
A:JLL201
|
5.0
|
55.3
|
1.0
|
|
Iron binding site 2 out
of 2 in 7zof
Go back to
Iron Binding Sites List in 7zof
Iron binding site 2 out
of 2 in the Streptavidin Iron-Porphyrin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Streptavidin Iron-Porphyrin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:36.8
occ:0.80
|
N4
|
B:JLL201
|
2.0
|
54.6
|
1.0
|
N7
|
B:JLL201
|
2.0
|
50.9
|
1.0
|
N1
|
D:IMD201
|
2.0
|
61.8
|
1.0
|
N5
|
B:JLL201
|
2.0
|
41.0
|
1.0
|
N6
|
B:JLL201
|
2.1
|
55.5
|
1.0
|
N1
|
B:IMD202
|
2.1
|
42.1
|
1.0
|
C29
|
B:JLL201
|
3.0
|
67.0
|
1.0
|
C2
|
D:IMD201
|
3.0
|
64.5
|
1.0
|
C27
|
B:JLL201
|
3.0
|
60.0
|
1.0
|
C2
|
B:IMD202
|
3.0
|
46.9
|
1.0
|
C20
|
B:JLL201
|
3.1
|
45.2
|
1.0
|
C5
|
D:IMD201
|
3.1
|
66.7
|
1.0
|
C23
|
B:JLL201
|
3.1
|
50.1
|
1.0
|
C16
|
B:JLL201
|
3.1
|
63.7
|
1.0
|
C32
|
B:JLL201
|
3.1
|
57.5
|
1.0
|
C5
|
B:IMD202
|
3.1
|
42.9
|
1.0
|
C15
|
B:JLL201
|
3.2
|
58.8
|
1.0
|
C24
|
B:JLL201
|
3.2
|
63.8
|
1.0
|
C28
|
B:JLL201
|
3.3
|
56.4
|
1.0
|
C19
|
B:JLL201
|
3.4
|
51.6
|
1.0
|
C33
|
B:JLL201
|
3.5
|
61.0
|
1.0
|
C14
|
B:JLL201
|
3.6
|
61.1
|
1.0
|
N3
|
D:IMD201
|
4.1
|
61.9
|
1.0
|
C17
|
B:JLL201
|
4.1
|
64.4
|
1.0
|
N3
|
B:IMD202
|
4.2
|
48.7
|
1.0
|
C4
|
D:IMD201
|
4.2
|
64.5
|
1.0
|
C30
|
B:JLL201
|
4.2
|
61.6
|
1.0
|
C18
|
B:JLL201
|
4.2
|
66.2
|
1.0
|
C4
|
B:IMD202
|
4.2
|
43.6
|
1.0
|
C31
|
B:JLL201
|
4.3
|
56.0
|
1.0
|
C26
|
B:JLL201
|
4.3
|
60.0
|
1.0
|
C21
|
B:JLL201
|
4.3
|
45.5
|
1.0
|
C22
|
B:JLL201
|
4.3
|
48.4
|
1.0
|
C25
|
B:JLL201
|
4.4
|
60.5
|
1.0
|
|
Reference:
N.V.Igareta,
N.V.Igareta,
T.R.Ward.
N/A N/A.
Page generated: Fri Aug 9 15:10:17 2024
|