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Iron in PDB 7zrx: F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State

Protein crystallography data

The structure of F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State, PDB code: 7zrx was solved by H.R.Adams, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.20 / 2.04
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 105.537, 105.537, 105.537, 90, 90, 90
R / Rfree (%) 18.4 / 21.5

Other elements in 7zrx:

The structure of F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State (pdb code 7zrx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State, PDB code: 7zrx:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7zrx

Go back to Iron Binding Sites List in 7zrx
Iron binding site 1 out of 2 in the F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:40.5
occ:1.00
FE A:HEC202 0.0 40.5 1.0
NC A:HEC202 2.1 42.1 1.0
ND A:HEC202 2.1 41.9 1.0
NB A:HEC202 2.1 39.2 1.0
NA A:HEC202 2.1 40.3 1.0
NE2 A:HIS123 2.1 39.0 1.0
CE1 A:HIS123 3.1 42.4 1.0
C1A A:HEC202 3.1 44.2 1.0
C4C A:HEC202 3.1 43.8 1.0
C1D A:HEC202 3.1 39.3 1.0
C1B A:HEC202 3.1 42.4 1.0
C1C A:HEC202 3.1 44.0 1.0
C4D A:HEC202 3.1 39.4 1.0
C4B A:HEC202 3.1 40.6 1.0
C4A A:HEC202 3.1 39.9 1.0
CD2 A:HIS123 3.2 40.4 1.0
CHA A:HEC202 3.4 39.7 1.0
CHD A:HEC202 3.4 40.4 1.0
CHC A:HEC202 3.5 42.2 1.0
CHB A:HEC202 3.5 41.4 1.0
ND1 A:HIS123 4.2 42.7 1.0
CG A:HIS123 4.3 43.4 1.0
C3C A:HEC202 4.4 44.0 1.0
C2C A:HEC202 4.4 44.4 1.0
C2A A:HEC202 4.4 39.9 1.0
C2B A:HEC202 4.4 40.7 1.0
C2D A:HEC202 4.4 42.5 1.0
C3B A:HEC202 4.4 40.6 1.0
C3D A:HEC202 4.4 40.5 1.0
C3A A:HEC202 4.4 38.0 1.0
CE1 A:PHE133 4.9 48.8 1.0
CD1 A:PHE133 4.9 48.5 1.0
CZ A:PHE32 4.9 46.4 0.5

Iron binding site 2 out of 2 in 7zrx

Go back to Iron Binding Sites List in 7zrx
Iron binding site 2 out of 2 in the F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:45.5
occ:1.00
FE B:HEC201 0.0 45.5 1.0
ND B:HEC201 2.0 48.3 1.0
NA B:HEC201 2.1 47.5 1.0
NC B:HEC201 2.1 50.3 1.0
NB B:HEC201 2.1 44.8 1.0
NE2 B:HIS123 2.1 46.7 1.0
CE1 B:HIS123 3.0 46.8 1.0
C4D B:HEC201 3.0 48.1 1.0
C1A B:HEC201 3.0 45.7 1.0
C1D B:HEC201 3.1 48.7 1.0
C1C B:HEC201 3.1 46.2 1.0
C4B B:HEC201 3.1 43.6 1.0
C4C B:HEC201 3.1 47.3 1.0
C1B B:HEC201 3.1 45.3 1.0
C4A B:HEC201 3.1 43.5 1.0
CD2 B:HIS123 3.2 47.2 1.0
CHA B:HEC201 3.4 41.2 1.0
CHC B:HEC201 3.4 43.0 1.0
CHD B:HEC201 3.4 45.2 1.0
CHB B:HEC201 3.5 43.0 1.0
ND1 B:HIS123 4.1 42.6 1.0
CG B:HIS123 4.3 46.9 1.0
C3D B:HEC201 4.3 41.8 1.0
C2A B:HEC201 4.4 43.2 1.0
C2D B:HEC201 4.4 40.6 1.0
C3B B:HEC201 4.4 43.3 1.0
C3C B:HEC201 4.4 49.5 1.0
C2C B:HEC201 4.4 46.6 1.0
C3A B:HEC201 4.4 41.7 1.0
C2B B:HEC201 4.4 43.0 1.0
CZ B:PHE32 4.5 50.0 0.4
CE2 B:PHE32 4.8 50.5 0.4
CZ B:PHE32 4.9 39.2 0.6
CD2 B:PHE133 4.9 41.1 1.0
CE2 B:PHE32 4.9 37.9 0.6
CE2 B:PHE133 4.9 44.2 1.0
CE1 B:PHE32 5.0 51.2 0.4

Reference:

H.R.Adams, R.W.Strange, D.A.Svistunenko, C.R.Andrew, M.A.Hough. F61V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) To Be Published.
Page generated: Fri Aug 9 15:15:22 2024

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