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Iron in PDB 7zsv: F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form

Protein crystallography data

The structure of F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form, PDB code: 7zsv was solved by H.R.Adams, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.96 / 1.74
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 105.803, 105.803, 105.803, 90, 90, 90
R / Rfree (%) 18.2 / 20.9

Other elements in 7zsv:

The structure of F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form (pdb code 7zsv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form, PDB code: 7zsv:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7zsv

Go back to Iron Binding Sites List in 7zsv
Iron binding site 1 out of 2 in the F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:32.8
occ:1.00
FE A:HEC202 0.0 32.8 1.0
ND A:HEC202 2.0 33.4 1.0
NC A:HEC202 2.0 36.8 1.0
NE2 A:HIS123 2.1 31.0 1.0
NA A:HEC202 2.1 30.5 1.0
NB A:HEC202 2.1 31.7 1.0
CE1 A:HIS123 3.0 33.3 1.0
C1D A:HEC202 3.0 34.0 1.0
C1C A:HEC202 3.0 38.0 1.0
C4B A:HEC202 3.1 31.9 1.0
C4C A:HEC202 3.1 37.5 1.0
C4D A:HEC202 3.1 30.8 1.0
C1A A:HEC202 3.1 32.7 1.0
O A:HOH360 3.1 51.2 1.0
C1B A:HEC202 3.1 32.2 1.0
C4A A:HEC202 3.1 33.6 1.0
CD2 A:HIS123 3.2 32.3 1.0
CHC A:HEC202 3.3 35.6 1.0
CHD A:HEC202 3.3 36.9 1.0
CHA A:HEC202 3.4 30.0 1.0
CHB A:HEC202 3.4 29.8 1.0
ND1 A:HIS123 4.1 31.7 1.0
C2C A:HEC202 4.3 40.0 1.0
C2D A:HEC202 4.3 39.5 1.0
CG A:HIS123 4.3 31.8 1.0
C3C A:HEC202 4.3 37.1 1.0
C2A A:HEC202 4.3 32.0 1.0
C3D A:HEC202 4.3 33.0 1.0
C3A A:HEC202 4.3 29.5 1.0
C2B A:HEC202 4.3 29.6 1.0
C3B A:HEC202 4.3 30.7 1.0
CE1 A:PHE133 4.8 39.9 1.0
O A:HOH365 4.8 49.7 1.0
CD1 A:PHE133 4.9 38.1 1.0

Iron binding site 2 out of 2 in 7zsv

Go back to Iron Binding Sites List in 7zsv
Iron binding site 2 out of 2 in the F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) Chemically Reduced Ferrous Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:35.1
occ:1.00
FE B:HEC201 0.0 35.1 1.0
ND B:HEC201 2.0 32.6 1.0
NB B:HEC201 2.1 35.4 1.0
NA B:HEC201 2.1 32.3 1.0
NE2 B:HIS123 2.1 34.2 1.0
NC B:HEC201 2.1 37.6 1.0
CE1 B:HIS123 3.0 34.6 1.0
C4D B:HEC201 3.0 34.2 1.0
C1A B:HEC201 3.0 29.5 1.0
C1D B:HEC201 3.0 37.8 1.0
C4B B:HEC201 3.1 35.0 1.0
C1B B:HEC201 3.1 35.2 1.0
C1C B:HEC201 3.1 37.5 1.0
C4A B:HEC201 3.1 34.5 1.0
C4C B:HEC201 3.1 41.5 1.0
CD2 B:HIS123 3.2 36.3 1.0
O4 B:PEG205 3.4 81.2 1.0
CHA B:HEC201 3.4 30.3 1.0
CHC B:HEC201 3.4 37.2 1.0
CHD B:HEC201 3.4 38.0 1.0
CHB B:HEC201 3.5 35.2 1.0
C3 B:PEG205 3.6 68.9 1.0
C4 B:PEG205 4.0 75.0 1.0
ND1 B:HIS123 4.2 34.1 1.0
C3D B:HEC201 4.2 34.0 1.0
C2A B:HEC201 4.2 31.8 1.0
C2D B:HEC201 4.3 35.0 1.0
CG B:HIS123 4.3 37.3 1.0
C3B B:HEC201 4.3 37.1 1.0
C3A B:HEC201 4.3 31.8 1.0
C2B B:HEC201 4.3 34.0 1.0
C2C B:HEC201 4.3 40.0 1.0
C3C B:HEC201 4.3 41.0 1.0
CD2 B:PHE133 4.8 38.1 1.0
CE2 B:PHE133 4.8 40.3 1.0
O2 B:PEG205 4.9 70.3 1.0

Reference:

H.R.Adams, R.W.Strange, D.A.Svistunenko, C.R.Andrew, M.A.Hough. F32V Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath) To Be Published.
Page generated: Fri Aug 9 15:26:45 2024

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