Iron in PDB 7zy1: I567A Mutant of Recombinant Codh-II
Enzymatic activity of I567A Mutant of Recombinant Codh-II
All present enzymatic activity of I567A Mutant of Recombinant Codh-II:
1.2.7.4;
Protein crystallography data
The structure of I567A Mutant of Recombinant Codh-II, PDB code: 7zy1
was solved by
Y.Basak,
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.24 /
1.43
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.669,
75.809,
71.5,
90,
111.11,
90
|
R / Rfree (%)
|
12.9 /
14.4
|
Other elements in 7zy1:
The structure of I567A Mutant of Recombinant Codh-II also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the I567A Mutant of Recombinant Codh-II
(pdb code 7zy1). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
I567A Mutant of Recombinant Codh-II, PDB code: 7zy1:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 1 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:10.8
occ:1.00
|
FE1
|
X:SF4701
|
0.0
|
10.8
|
1.0
|
S3
|
X:SF4701
|
2.2
|
11.6
|
1.0
|
S2
|
X:SF4701
|
2.2
|
11.0
|
1.0
|
S4
|
X:SF4701
|
2.2
|
10.2
|
1.0
|
SG
|
X:CYS56
|
2.3
|
10.8
|
1.0
|
FE3
|
X:SF4701
|
2.6
|
9.7
|
1.0
|
FE2
|
X:SF4701
|
2.7
|
10.4
|
1.0
|
FE4
|
X:SF4701
|
2.7
|
11.0
|
1.0
|
HB2
|
X:CYS56
|
2.9
|
14.1
|
1.0
|
CB
|
X:CYS56
|
3.2
|
11.6
|
1.0
|
H
|
X:ILE69
|
3.3
|
12.3
|
1.0
|
HB
|
X:ILE69
|
3.5
|
14.2
|
1.0
|
HB3
|
X:CYS56
|
3.7
|
14.1
|
1.0
|
S1
|
X:SF4701
|
3.8
|
10.1
|
1.0
|
H
|
X:CYS70
|
4.0
|
12.4
|
1.0
|
HB3
|
X:CYS48
|
4.0
|
12.3
|
1.0
|
N
|
X:ILE69
|
4.0
|
10.0
|
1.0
|
HA2
|
X:GLY54
|
4.1
|
14.9
|
1.0
|
HA3
|
X:GLY54
|
4.2
|
14.9
|
1.0
|
H
|
X:CYS56
|
4.2
|
12.2
|
1.0
|
HA3
|
X:GLY68
|
4.3
|
12.3
|
1.0
|
HD12
|
X:ILE69
|
4.4
|
14.6
|
1.0
|
CB
|
X:ILE69
|
4.4
|
11.7
|
1.0
|
CA
|
X:CYS56
|
4.4
|
10.7
|
1.0
|
CA
|
X:GLY54
|
4.4
|
12.7
|
1.0
|
HB2
|
X:GLN53
|
4.5
|
14.0
|
1.0
|
N
|
X:CYS56
|
4.5
|
9.8
|
1.0
|
N
|
X:GLY54
|
4.5
|
11.8
|
1.0
|
H
|
X:GLY54
|
4.5
|
13.8
|
1.0
|
HA2
|
X:GLY68
|
4.6
|
12.3
|
1.0
|
SG
|
X:CYS48
|
4.6
|
9.6
|
1.0
|
O
|
X:CYS48
|
4.6
|
10.3
|
1.0
|
SG
|
X:CYS51
|
4.6
|
10.1
|
1.0
|
HG13
|
X:ILE69
|
4.7
|
13.2
|
1.0
|
N
|
X:CYS70
|
4.7
|
10.6
|
1.0
|
CB
|
X:CYS48
|
4.8
|
10.2
|
1.0
|
SG
|
X:CYS70
|
4.8
|
10.2
|
1.0
|
CA
|
X:GLY68
|
4.8
|
10.1
|
1.0
|
CA
|
X:ILE69
|
4.8
|
10.4
|
1.0
|
HA
|
X:CYS56
|
4.8
|
13.0
|
1.0
|
C
|
X:GLY68
|
4.9
|
10.6
|
1.0
|
CG1
|
X:ILE69
|
5.0
|
10.8
|
1.0
|
|
Iron binding site 2 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 2 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:10.4
occ:1.00
|
FE2
|
X:SF4701
|
0.0
|
10.4
|
1.0
|
S4
|
X:SF4701
|
2.2
|
10.2
|
1.0
|
S1
|
X:SF4701
|
2.3
|
10.1
|
1.0
|
S3
|
X:SF4701
|
2.3
|
11.6
|
1.0
|
SG
|
X:CYS51
|
2.3
|
10.1
|
1.0
|
FE3
|
X:SF4701
|
2.6
|
9.7
|
1.0
|
FE1
|
X:SF4701
|
2.7
|
10.8
|
1.0
|
FE4
|
X:SF4701
|
2.7
|
11.0
|
1.0
|
H
|
X:CYS51
|
3.2
|
12.9
|
1.0
|
HB3
|
X:CYS51
|
3.3
|
11.7
|
1.0
|
CB
|
X:CYS51
|
3.4
|
9.5
|
1.0
|
N
|
X:CYS51
|
3.6
|
10.2
|
1.0
|
HB2
|
X:GLN53
|
3.7
|
14.0
|
1.0
|
HG3
|
X:MET199
|
3.8
|
12.4
|
1.0
|
S2
|
X:SF4701
|
3.8
|
11.0
|
1.0
|
CA
|
X:CYS51
|
3.9
|
10.1
|
1.0
|
H
|
X:GLY54
|
4.0
|
13.8
|
1.0
|
HB2
|
X:MET199
|
4.2
|
11.4
|
1.0
|
HB2
|
X:CYS51
|
4.2
|
11.7
|
1.0
|
H
|
X:GLN53
|
4.2
|
13.7
|
1.0
|
O
|
X:CYS51
|
4.2
|
10.8
|
1.0
|
HG2
|
X:MET199
|
4.3
|
12.4
|
1.0
|
C
|
X:CYS51
|
4.3
|
9.9
|
1.0
|
C
|
X:HIS50
|
4.3
|
11.1
|
1.0
|
CG
|
X:MET199
|
4.4
|
10.2
|
1.0
|
H
|
X:HIS50
|
4.4
|
13.2
|
1.0
|
N
|
X:GLY54
|
4.4
|
11.8
|
1.0
|
HB2
|
X:HIS50
|
4.5
|
12.8
|
1.0
|
HB3
|
X:CYS70
|
4.5
|
13.9
|
1.0
|
HA3
|
X:GLY54
|
4.6
|
14.9
|
1.0
|
CB
|
X:GLN53
|
4.7
|
11.6
|
1.0
|
N
|
X:HIS50
|
4.8
|
10.9
|
1.0
|
SG
|
X:CYS48
|
4.8
|
9.6
|
1.0
|
HA
|
X:CYS51
|
4.8
|
12.7
|
1.0
|
SG
|
X:CYS70
|
4.8
|
10.2
|
1.0
|
SG
|
X:CYS56
|
4.8
|
10.8
|
1.0
|
CB
|
X:MET199
|
4.8
|
9.2
|
1.0
|
OE1
|
X:GLN53
|
4.9
|
14.1
|
1.0
|
N
|
X:GLN53
|
4.9
|
11.0
|
1.0
|
H
|
X:CYS70
|
4.9
|
12.4
|
1.0
|
HB
|
X:ILE69
|
4.9
|
14.2
|
1.0
|
O
|
X:HIS50
|
5.0
|
11.8
|
1.0
|
CA
|
X:HIS50
|
5.0
|
10.3
|
1.0
|
CA
|
X:GLY54
|
5.0
|
12.7
|
1.0
|
|
Iron binding site 3 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 3 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:9.7
occ:1.00
|
FE3
|
X:SF4701
|
0.0
|
9.7
|
1.0
|
S1
|
X:SF4701
|
2.2
|
10.1
|
1.0
|
S2
|
X:SF4701
|
2.2
|
11.0
|
1.0
|
S4
|
X:SF4701
|
2.3
|
10.2
|
1.0
|
SG
|
X:CYS48
|
2.3
|
9.6
|
1.0
|
FE1
|
X:SF4701
|
2.6
|
10.8
|
1.0
|
FE2
|
X:SF4701
|
2.6
|
10.4
|
1.0
|
FE4
|
X:SF4701
|
2.7
|
11.0
|
1.0
|
HB3
|
X:CYS48
|
3.0
|
12.3
|
1.0
|
HH22
|
X:ARG80
|
3.2
|
12.3
|
1.0
|
H
|
X:HIS50
|
3.3
|
13.2
|
1.0
|
CB
|
X:CYS48
|
3.3
|
10.2
|
1.0
|
HB2
|
X:HIS50
|
3.5
|
12.8
|
1.0
|
HH21
|
X:ARG80
|
3.6
|
12.3
|
1.0
|
NH2
|
X:ARG80
|
3.7
|
10.5
|
1.0
|
S3
|
X:SF4701
|
3.8
|
11.6
|
1.0
|
HB2
|
X:CYS48
|
3.9
|
12.3
|
1.0
|
HB2
|
X:CYS56
|
3.9
|
14.1
|
1.0
|
N
|
X:HIS50
|
4.0
|
10.9
|
1.0
|
H
|
X:CYS51
|
4.0
|
12.9
|
1.0
|
C
|
X:CYS48
|
4.2
|
9.6
|
1.0
|
O
|
X:CYS48
|
4.3
|
10.3
|
1.0
|
CB
|
X:HIS50
|
4.3
|
10.5
|
1.0
|
CA
|
X:CYS48
|
4.4
|
8.7
|
1.0
|
N
|
X:CYS51
|
4.5
|
10.2
|
1.0
|
CA
|
X:HIS50
|
4.5
|
10.3
|
1.0
|
SG
|
X:CYS56
|
4.7
|
10.8
|
1.0
|
N
|
X:ARG49
|
4.7
|
10.8
|
1.0
|
CB
|
X:CYS56
|
4.7
|
11.6
|
1.0
|
C
|
X:HIS50
|
4.7
|
11.1
|
1.0
|
HG12
|
X:ILE77
|
4.7
|
14.2
|
1.0
|
CZ
|
X:ARG80
|
4.8
|
11.4
|
1.0
|
SG
|
X:CYS70
|
4.8
|
10.2
|
1.0
|
SG
|
X:CYS51
|
4.9
|
10.1
|
1.0
|
HA
|
X:CYS48
|
4.9
|
10.8
|
1.0
|
HA
|
X:ARG49
|
4.9
|
13.0
|
1.0
|
HB3
|
X:ALA72
|
4.9
|
14.8
|
1.0
|
C
|
X:ARG49
|
5.0
|
11.3
|
1.0
|
H
|
X:CYS56
|
5.0
|
12.2
|
1.0
|
HB3
|
X:HIS50
|
5.0
|
12.8
|
1.0
|
|
Iron binding site 4 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 4 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:11.0
occ:1.00
|
FE4
|
X:SF4701
|
0.0
|
11.0
|
1.0
|
S2
|
X:SF4701
|
2.2
|
11.0
|
1.0
|
S1
|
X:SF4701
|
2.2
|
10.1
|
1.0
|
S3
|
X:SF4701
|
2.3
|
11.6
|
1.0
|
SG
|
X:CYS70
|
2.3
|
10.2
|
1.0
|
FE3
|
X:SF4701
|
2.7
|
9.7
|
1.0
|
FE1
|
X:SF4701
|
2.7
|
10.8
|
1.0
|
FE2
|
X:SF4701
|
2.7
|
10.4
|
1.0
|
H
|
X:CYS70
|
3.1
|
12.4
|
1.0
|
HB3
|
X:CYS70
|
3.2
|
13.9
|
1.0
|
HH22
|
X:ARG80
|
3.4
|
12.3
|
1.0
|
CB
|
X:CYS70
|
3.4
|
11.7
|
1.0
|
S4
|
X:SF4701
|
3.9
|
10.2
|
1.0
|
N
|
X:CYS70
|
3.9
|
10.6
|
1.0
|
HB2
|
X:ALA72
|
3.9
|
14.8
|
1.0
|
HG2
|
X:MET199
|
4.0
|
12.4
|
1.0
|
HB3
|
X:ALA72
|
4.0
|
14.8
|
1.0
|
HB2
|
X:CYS70
|
4.1
|
13.9
|
1.0
|
O
|
X:HOH1102
|
4.2
|
9.7
|
1.0
|
NH2
|
X:ARG80
|
4.2
|
10.5
|
1.0
|
CA
|
X:CYS70
|
4.2
|
11.7
|
1.0
|
H
|
X:ALA72
|
4.3
|
13.4
|
1.0
|
H
|
X:ILE69
|
4.3
|
12.3
|
1.0
|
HA3
|
X:GLY68
|
4.4
|
12.3
|
1.0
|
HG3
|
X:MET199
|
4.4
|
12.4
|
1.0
|
CB
|
X:ALA72
|
4.4
|
12.0
|
1.0
|
HH21
|
X:ARG80
|
4.5
|
12.3
|
1.0
|
HH12
|
X:ARG80
|
4.5
|
12.7
|
1.0
|
HB
|
X:ILE69
|
4.6
|
14.2
|
1.0
|
CG
|
X:MET199
|
4.6
|
10.2
|
1.0
|
N
|
X:ILE69
|
4.7
|
10.0
|
1.0
|
SG
|
X:CYS51
|
4.7
|
10.1
|
1.0
|
SG
|
X:CYS56
|
4.8
|
10.8
|
1.0
|
SG
|
X:CYS48
|
4.8
|
9.6
|
1.0
|
HA
|
X:CYS70
|
5.0
|
13.6
|
1.0
|
C
|
X:ILE69
|
5.0
|
11.1
|
1.0
|
|
Iron binding site 5 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 5 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe702
b:11.9
occ:1.00
|
FE1
|
X:FES702
|
0.0
|
11.9
|
1.0
|
S1
|
X:FES702
|
2.2
|
11.9
|
1.0
|
SG
|
X:CYS47
|
2.3
|
11.0
|
1.0
|
S2
|
X:FES702
|
2.3
|
11.7
|
1.0
|
FE2
|
X:FES702
|
2.7
|
11.5
|
1.0
|
HB2
|
X:CYS47
|
3.1
|
12.8
|
1.0
|
CB
|
X:CYS47
|
3.2
|
10.4
|
1.0
|
HB3
|
X:CYS47
|
3.5
|
12.8
|
1.0
|
O
|
X:HOH1282
|
3.7
|
16.1
|
1.0
|
HB2
|
X:PHE41
|
4.1
|
14.7
|
1.0
|
HD2
|
X:ARG49
|
4.3
|
17.7
|
1.0
|
HB2
|
X:PRO55
|
4.5
|
15.6
|
1.0
|
CA
|
X:CYS47
|
4.6
|
10.7
|
1.0
|
HA
|
X:CYS47
|
4.7
|
12.9
|
1.0
|
SG
|
X:CYS39
|
4.7
|
12.2
|
1.0
|
HB3
|
X:PHE41
|
4.7
|
14.7
|
1.0
|
H
|
X:GLY42
|
4.8
|
15.5
|
1.0
|
HG3
|
X:ARG49
|
4.8
|
13.9
|
1.0
|
HB3
|
X:ARG57
|
4.8
|
16.8
|
1.0
|
CB
|
X:PHE41
|
4.9
|
12.2
|
1.0
|
HB3
|
X:PRO55
|
4.9
|
15.6
|
1.0
|
HA2
|
X:GLY42
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 6 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 6 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe702
b:11.5
occ:1.00
|
FE2
|
X:FES702
|
0.0
|
11.5
|
1.0
|
S2
|
X:FES702
|
2.2
|
11.7
|
1.0
|
SG
|
X:CYS39
|
2.3
|
12.2
|
1.0
|
S1
|
X:FES702
|
2.3
|
11.9
|
1.0
|
FE1
|
X:FES702
|
2.7
|
11.9
|
1.0
|
CB
|
X:CYS39
|
3.2
|
11.8
|
1.0
|
HB3
|
X:CYS39
|
3.2
|
14.2
|
1.0
|
HB2
|
X:CYS39
|
3.3
|
14.2
|
1.0
|
HB2
|
X:PHE41
|
3.4
|
14.7
|
1.0
|
H
|
X:GLY42
|
3.6
|
15.5
|
1.0
|
HD2
|
X:PHE41
|
4.0
|
17.9
|
1.0
|
N
|
X:GLY42
|
4.2
|
12.8
|
1.0
|
HA3
|
X:GLY42
|
4.3
|
15.6
|
1.0
|
CB
|
X:PHE41
|
4.4
|
12.2
|
1.0
|
HB2
|
X:CYS47
|
4.5
|
12.8
|
1.0
|
O
|
X:HOH1615
|
4.6
|
37.3
|
0.5
|
CA
|
X:CYS39
|
4.6
|
11.5
|
1.0
|
H
|
X:PHE41
|
4.6
|
13.9
|
1.0
|
CA
|
X:GLY42
|
4.8
|
12.7
|
1.0
|
HB3
|
X:PHE41
|
4.8
|
14.7
|
1.0
|
SG
|
X:CYS47
|
4.8
|
11.0
|
1.0
|
CD2
|
X:PHE41
|
4.8
|
15.1
|
1.0
|
HA
|
X:CYS39
|
4.9
|
13.6
|
1.0
|
HA2
|
X:GLY42
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 7 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 7 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:13.9
occ:0.73
|
FE1
|
X:WCC703
|
0.0
|
13.9
|
0.7
|
SG
|
X:CYS333
|
2.2
|
14.1
|
1.0
|
S4
|
X:WCC703
|
2.3
|
13.5
|
0.7
|
S3
|
X:WCC703
|
2.3
|
19.1
|
1.0
|
S2
|
X:WCC703
|
2.3
|
16.5
|
0.9
|
FE3
|
X:WCC703
|
2.5
|
13.3
|
0.7
|
FE4
|
X:WCC703
|
2.7
|
14.5
|
0.8
|
HB3
|
X:CYS333
|
3.0
|
14.3
|
1.0
|
CB
|
X:CYS333
|
3.1
|
12.1
|
1.0
|
NI
|
X:WCC703
|
3.2
|
18.4
|
0.2
|
HZ1
|
X:LYS563
|
3.4
|
18.6
|
1.0
|
HB2
|
X:CYS333
|
3.4
|
14.3
|
1.0
|
FE
|
X:FE2704
|
3.4
|
12.5
|
0.5
|
FE
|
X:FE2704
|
3.5
|
21.9
|
0.3
|
HE1
|
X:HIS261
|
3.6
|
16.1
|
1.0
|
S1
|
X:WCC703
|
3.6
|
14.9
|
0.8
|
HZ2
|
X:LYS563
|
3.7
|
18.6
|
1.0
|
O
|
X:HOH911
|
3.8
|
14.8
|
0.7
|
NZ
|
X:LYS563
|
4.0
|
15.8
|
1.0
|
NI
|
X:WCC703
|
4.0
|
11.7
|
0.2
|
HB2
|
X:HIS561
|
4.1
|
12.2
|
1.0
|
NE2
|
X:HIS261
|
4.1
|
16.6
|
1.0
|
CE1
|
X:HIS261
|
4.2
|
13.7
|
1.0
|
HE1
|
X:MET560
|
4.3
|
16.2
|
1.0
|
HE3
|
X:LYS563
|
4.3
|
16.6
|
1.0
|
HE3
|
X:MET560
|
4.4
|
16.2
|
1.0
|
HG
|
X:CYS294
|
4.4
|
20.9
|
1.0
|
CA
|
X:CYS333
|
4.5
|
11.9
|
1.0
|
HA
|
X:CYS333
|
4.6
|
14.2
|
1.0
|
SG
|
X:CYS446
|
4.6
|
14.3
|
1.0
|
O
|
X:HOH1035
|
4.6
|
16.8
|
1.0
|
HZ3
|
X:LYS563
|
4.7
|
18.6
|
1.0
|
HD2
|
X:HIS561
|
4.7
|
12.5
|
1.0
|
CE
|
X:LYS563
|
4.7
|
14.0
|
1.0
|
CE
|
X:MET560
|
4.8
|
13.7
|
1.0
|
HB3
|
X:HIS561
|
4.8
|
12.2
|
1.0
|
CB
|
X:HIS561
|
4.8
|
10.2
|
1.0
|
SG
|
X:CYS476
|
4.9
|
17.6
|
1.0
|
HB3
|
X:CYS446
|
4.9
|
15.0
|
1.0
|
HB3
|
X:CYS294
|
4.9
|
17.5
|
1.0
|
HG
|
X:SER312
|
5.0
|
17.1
|
1.0
|
CD2
|
X:HIS561
|
5.0
|
10.4
|
1.0
|
|
Iron binding site 8 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 8 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:13.3
occ:0.74
|
FE3
|
X:WCC703
|
0.0
|
13.3
|
0.7
|
S4
|
X:WCC703
|
2.2
|
13.5
|
0.7
|
S1
|
X:WCC703
|
2.3
|
14.9
|
0.8
|
S2
|
X:WCC703
|
2.3
|
16.5
|
0.9
|
SG
|
X:CYS446
|
2.3
|
14.3
|
1.0
|
FE1
|
X:WCC703
|
2.5
|
13.9
|
0.7
|
FE4
|
X:WCC703
|
2.7
|
14.5
|
0.8
|
NI
|
X:WCC703
|
2.9
|
18.4
|
0.2
|
NI
|
X:WCC703
|
2.9
|
11.7
|
0.2
|
HA
|
X:CYS446
|
3.0
|
16.6
|
1.0
|
CB
|
X:CYS446
|
3.1
|
12.6
|
1.0
|
HB3
|
X:CYS446
|
3.2
|
15.0
|
1.0
|
CA
|
X:CYS446
|
3.4
|
14.1
|
1.0
|
N
|
X:CYS446
|
3.6
|
14.0
|
1.0
|
HB2
|
X:HIS561
|
3.7
|
12.2
|
1.0
|
HE3
|
X:MET560
|
3.8
|
16.2
|
1.0
|
HA2
|
X:GLY445
|
3.8
|
15.9
|
1.0
|
H
|
X:CYS446
|
3.9
|
16.5
|
1.0
|
C
|
X:GLY445
|
4.0
|
13.9
|
1.0
|
S3
|
X:WCC703
|
4.0
|
19.1
|
1.0
|
HB2
|
X:CYS446
|
4.0
|
15.0
|
1.0
|
HB3
|
X:HIS561
|
4.2
|
12.2
|
1.0
|
H
|
X:HIS561
|
4.2
|
12.7
|
1.0
|
HB2
|
X:CYS476
|
4.2
|
18.0
|
1.0
|
HB2
|
X:ALA564
|
4.4
|
16.8
|
1.0
|
SG
|
X:CYS333
|
4.4
|
14.1
|
1.0
|
CB
|
X:HIS561
|
4.4
|
10.2
|
1.0
|
FE
|
X:FE2704
|
4.4
|
21.9
|
0.3
|
CA
|
X:GLY445
|
4.5
|
13.2
|
1.0
|
HG
|
X:SER312
|
4.5
|
17.1
|
1.0
|
O
|
X:GLY445
|
4.6
|
17.0
|
1.0
|
HB3
|
X:MET560
|
4.6
|
14.5
|
1.0
|
HE1
|
X:MET560
|
4.6
|
16.2
|
1.0
|
CE
|
X:MET560
|
4.6
|
13.7
|
1.0
|
O
|
X:HOH911
|
4.7
|
14.8
|
0.7
|
SG
|
X:CYS526
|
4.7
|
15.7
|
0.7
|
H
|
X:CYS476
|
4.7
|
15.4
|
1.0
|
SG
|
X:CYS476
|
4.8
|
17.6
|
1.0
|
FE
|
X:FE2704
|
4.8
|
12.5
|
0.5
|
C
|
X:CYS446
|
4.9
|
13.3
|
1.0
|
HA3
|
X:GLY445
|
4.9
|
15.9
|
1.0
|
O
|
X:HOH1431
|
4.9
|
36.7
|
1.0
|
CB
|
X:CYS476
|
5.0
|
15.0
|
1.0
|
N
|
X:HIS561
|
5.0
|
10.6
|
1.0
|
H
|
X:MET560
|
5.0
|
12.4
|
1.0
|
|
Iron binding site 9 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 9 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:14.5
occ:0.79
|
FE4
|
X:WCC703
|
0.0
|
14.5
|
0.8
|
S1
|
X:WCC703
|
2.2
|
14.9
|
0.8
|
S2
|
X:WCC703
|
2.3
|
16.5
|
0.9
|
S3
|
X:WCC703
|
2.3
|
19.1
|
1.0
|
SG
|
X:CYS476
|
2.3
|
17.6
|
1.0
|
FE1
|
X:WCC703
|
2.7
|
13.9
|
0.7
|
FE3
|
X:WCC703
|
2.7
|
13.3
|
0.7
|
HB2
|
X:CYS476
|
3.0
|
18.0
|
1.0
|
CB
|
X:CYS476
|
3.3
|
15.0
|
1.0
|
HG
|
X:CYS294
|
3.4
|
20.9
|
1.0
|
FE
|
X:FE2704
|
3.4
|
21.9
|
0.3
|
H
|
X:CYS476
|
3.4
|
15.4
|
1.0
|
HA
|
X:CYS446
|
3.5
|
16.6
|
1.0
|
NI
|
X:WCC703
|
3.5
|
18.4
|
0.2
|
HB2
|
X:SER312
|
3.7
|
17.5
|
1.0
|
S4
|
X:WCC703
|
3.9
|
13.5
|
0.7
|
O
|
X:HOH1107
|
3.9
|
20.1
|
1.0
|
N
|
X:CYS476
|
4.0
|
12.9
|
1.0
|
FE
|
X:FE2704
|
4.0
|
12.5
|
0.5
|
HB3
|
X:CYS476
|
4.0
|
18.0
|
1.0
|
NI
|
X:WCC703
|
4.0
|
11.7
|
0.2
|
HG
|
X:SER312
|
4.1
|
17.1
|
1.0
|
CA
|
X:CYS476
|
4.3
|
13.3
|
1.0
|
CA
|
X:CYS446
|
4.4
|
14.1
|
1.0
|
HB3
|
X:CYS446
|
4.4
|
15.0
|
1.0
|
SG
|
X:CYS294
|
4.5
|
17.1
|
1.0
|
CB
|
X:SER312
|
4.5
|
15.0
|
1.0
|
HA
|
X:CYS294
|
4.5
|
17.0
|
1.0
|
HB3
|
X:CYS333
|
4.5
|
14.3
|
1.0
|
OG
|
X:SER312
|
4.6
|
14.5
|
1.0
|
SG
|
X:CYS526
|
4.6
|
15.7
|
0.7
|
HA
|
X:SER312
|
4.6
|
18.4
|
1.0
|
HB3
|
X:CYS294
|
4.7
|
17.5
|
1.0
|
HA
|
X:CYS476
|
4.7
|
15.8
|
1.0
|
O
|
X:GLY445
|
4.7
|
17.0
|
1.0
|
CB
|
X:CYS446
|
4.7
|
12.6
|
1.0
|
SG
|
X:CYS295
|
4.7
|
14.1
|
0.4
|
SG
|
X:CYS446
|
4.8
|
14.3
|
1.0
|
SG
|
X:CYS333
|
4.8
|
14.1
|
1.0
|
H
|
X:SER312
|
4.8
|
16.9
|
1.0
|
C
|
X:GLY445
|
4.8
|
13.9
|
1.0
|
HA3
|
X:GLY475
|
4.9
|
14.2
|
1.0
|
N
|
X:CYS446
|
4.9
|
14.0
|
1.0
|
C
|
X:GLY475
|
4.9
|
11.8
|
1.0
|
SG
|
X:CYS295
|
5.0
|
12.8
|
0.6
|
O
|
X:HOH911
|
5.0
|
14.8
|
0.7
|
|
Iron binding site 10 out
of 11 in 7zy1
Go back to
Iron Binding Sites List in 7zy1
Iron binding site 10 out
of 11 in the I567A Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of I567A Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe704
b:21.9
occ:0.31
|
FE
|
X:FE2704
|
0.0
|
21.9
|
0.3
|
FE
|
X:FE2704
|
1.1
|
12.5
|
0.5
|
SG
|
X:CYS295
|
2.0
|
12.8
|
0.6
|
HG
|
X:CYS295
|
2.0
|
15.5
|
0.6
|
SG
|
X:CYS295
|
2.3
|
14.1
|
0.4
|
NI
|
X:WCC703
|
2.4
|
18.4
|
0.2
|
S3
|
X:WCC703
|
2.4
|
19.1
|
1.0
|
O
|
X:HOH911
|
2.4
|
14.8
|
0.7
|
SG
|
X:CYS526
|
2.5
|
15.7
|
0.7
|
HB2
|
X:CYS526
|
2.6
|
32.0
|
0.3
|
NE2
|
X:HIS261
|
3.0
|
16.6
|
1.0
|
HB2
|
X:CYS295
|
3.1
|
11.1
|
0.4
|
HB2
|
X:CYS526
|
3.2
|
14.3
|
0.7
|
HG
|
X:CYS295
|
3.3
|
17.0
|
0.4
|
NI
|
X:WCC703
|
3.3
|
11.7
|
0.2
|
CB
|
X:CYS295
|
3.3
|
9.2
|
0.4
|
HB3
|
X:CYS526
|
3.4
|
32.0
|
0.3
|
HB2
|
X:CYS295
|
3.4
|
16.3
|
0.6
|
CB
|
X:CYS295
|
3.4
|
13.6
|
0.6
|
S1
|
X:WCC703
|
3.4
|
14.9
|
0.8
|
FE4
|
X:WCC703
|
3.4
|
14.5
|
0.8
|
CB
|
X:CYS526
|
3.4
|
26.8
|
0.3
|
CB
|
X:CYS526
|
3.5
|
12.1
|
0.7
|
FE1
|
X:WCC703
|
3.5
|
13.9
|
0.7
|
H
|
X:CYS526
|
3.6
|
15.2
|
0.7
|
H
|
X:CYS526
|
3.6
|
15.2
|
0.3
|
HZ2
|
X:LYS563
|
3.7
|
18.6
|
1.0
|
O
|
X:HOH1107
|
3.7
|
20.1
|
1.0
|
HD2
|
X:HIS261
|
3.8
|
18.6
|
1.0
|
CD2
|
X:HIS261
|
3.8
|
15.8
|
1.0
|
S4
|
X:WCC703
|
3.9
|
13.5
|
0.7
|
HB3
|
X:CYS295
|
3.9
|
11.1
|
0.4
|
H
|
X:CYS295
|
4.0
|
10.3
|
0.6
|
H
|
X:CYS295
|
4.0
|
38.2
|
0.4
|
CE1
|
X:HIS261
|
4.0
|
13.7
|
1.0
|
HA2
|
X:GLY475
|
4.0
|
14.2
|
1.0
|
HB3
|
X:CYS295
|
4.1
|
16.3
|
0.6
|
HB3
|
X:CYS526
|
4.1
|
14.3
|
0.7
|
HE1
|
X:HIS261
|
4.2
|
16.1
|
1.0
|
N
|
X:CYS526
|
4.3
|
13.2
|
1.0
|
HA3
|
X:GLY475
|
4.3
|
14.2
|
1.0
|
CA
|
X:CYS295
|
4.3
|
20.0
|
0.6
|
HA
|
X:CYS295
|
4.3
|
23.8
|
0.6
|
N
|
X:CYS295
|
4.3
|
8.8
|
0.6
|
N
|
X:CYS295
|
4.4
|
32.0
|
0.4
|
CA
|
X:CYS295
|
4.4
|
7.3
|
0.4
|
HZ1
|
X:LYS563
|
4.4
|
18.6
|
1.0
|
FE3
|
X:WCC703
|
4.4
|
13.3
|
0.7
|
O
|
X:HOH815
|
4.4
|
18.6
|
0.9
|
CA
|
X:CYS526
|
4.4
|
25.6
|
0.3
|
NZ
|
X:LYS563
|
4.5
|
15.8
|
1.0
|
CA
|
X:CYS526
|
4.5
|
10.9
|
0.7
|
SG
|
X:CYS526
|
4.5
|
21.8
|
0.3
|
O
|
X:HOH1154
|
4.6
|
17.8
|
1.0
|
H
|
X:CYS476
|
4.6
|
15.4
|
1.0
|
HA
|
X:CYS295
|
4.6
|
8.5
|
0.4
|
CA
|
X:GLY475
|
4.6
|
11.7
|
1.0
|
HB3
|
X:CYS294
|
4.8
|
17.5
|
1.0
|
HZ3
|
X:LYS563
|
4.8
|
18.6
|
1.0
|
HA
|
X:CYS526
|
4.8
|
30.2
|
0.3
|
HA
|
X:CYS526
|
4.9
|
12.7
|
0.7
|
SG
|
X:CYS476
|
4.9
|
17.6
|
1.0
|
CG
|
X:HIS261
|
5.0
|
14.7
|
1.0
|
HB2
|
X:SER525
|
5.0
|
14.9
|
1.0
|
|
Reference:
Y.Basak,
J.H.Jeoung,
L.Domnik,
J.Ruickoldt,
H.Dobbek.
Substrate Activation at the Ni,Fe Cluster of Co Dehydrogenases: the Influence of the Protein Matrix Acs Catalysis 2022.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.2C02922
Page generated: Fri Aug 9 15:43:55 2024
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