Iron in PDB 7zyv: Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Enzymatic activity of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
All present enzymatic activity of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution:
7.1.1.6;
Other elements in 7zyv:
The structure of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
(pdb code 7zyv). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution, PDB code: 7zyv:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 1 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:52.9
occ:1.00
|
FE
|
A:HEM301
|
0.0
|
52.9
|
1.0
|
ND
|
A:HEM301
|
2.0
|
52.9
|
1.0
|
NC
|
A:HEM301
|
2.0
|
52.9
|
1.0
|
NB
|
A:HEM301
|
2.0
|
52.9
|
1.0
|
NA
|
A:HEM301
|
2.0
|
52.9
|
1.0
|
NE2
|
A:HIS187
|
2.6
|
52.0
|
1.0
|
NE2
|
A:HIS86
|
2.6
|
52.2
|
1.0
|
C4D
|
A:HEM301
|
3.0
|
52.9
|
1.0
|
C4B
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C1C
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C1A
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C1D
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C1B
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C4C
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
C4A
|
A:HEM301
|
3.1
|
52.9
|
1.0
|
CHA
|
A:HEM301
|
3.4
|
52.9
|
1.0
|
CHC
|
A:HEM301
|
3.4
|
52.9
|
1.0
|
CHB
|
A:HEM301
|
3.4
|
52.9
|
1.0
|
CHD
|
A:HEM301
|
3.4
|
52.9
|
1.0
|
CE1
|
A:HIS86
|
3.4
|
52.2
|
1.0
|
CE1
|
A:HIS187
|
3.5
|
52.0
|
1.0
|
CD2
|
A:HIS187
|
3.6
|
52.0
|
1.0
|
CD2
|
A:HIS86
|
3.7
|
52.2
|
1.0
|
C3D
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C2D
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C2C
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C3B
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C2B
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C3C
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C2A
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
C3A
|
A:HEM301
|
4.3
|
52.9
|
1.0
|
ND1
|
A:HIS187
|
4.6
|
52.0
|
1.0
|
ND1
|
A:HIS86
|
4.6
|
52.2
|
1.0
|
CG
|
A:HIS187
|
4.7
|
52.0
|
1.0
|
CG
|
A:HIS86
|
4.8
|
52.2
|
1.0
|
NE2
|
A:GLN47
|
5.0
|
53.2
|
1.0
|
|
Iron binding site 2 out
of 12 in 7zyv
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Iron Binding Sites List in 7zyv
Iron binding site 2 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:53.9
occ:1.00
|
FE
|
A:HEM302
|
0.0
|
53.9
|
1.0
|
NB
|
A:HEM302
|
2.0
|
53.9
|
1.0
|
NC
|
A:HEM302
|
2.0
|
53.9
|
1.0
|
NA
|
A:HEM302
|
2.0
|
53.9
|
1.0
|
ND
|
A:HEM302
|
2.0
|
53.9
|
1.0
|
NE2
|
A:HIS100
|
2.6
|
51.8
|
1.0
|
NE2
|
A:HIS202
|
2.7
|
53.8
|
1.0
|
C4B
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C1B
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C1C
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C4C
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C4A
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C4D
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C1D
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
C1A
|
A:HEM302
|
3.1
|
53.9
|
1.0
|
CD2
|
A:HIS100
|
3.4
|
51.8
|
1.0
|
CHB
|
A:HEM302
|
3.4
|
53.9
|
1.0
|
CHC
|
A:HEM302
|
3.4
|
53.9
|
1.0
|
CHD
|
A:HEM302
|
3.4
|
53.9
|
1.0
|
CHA
|
A:HEM302
|
3.4
|
53.9
|
1.0
|
CD2
|
A:HIS202
|
3.4
|
53.8
|
1.0
|
CE1
|
A:HIS100
|
3.7
|
51.8
|
1.0
|
CE1
|
A:HIS202
|
3.8
|
53.8
|
1.0
|
C3B
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C2B
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C2C
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C3C
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C3D
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C2D
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C3A
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
C2A
|
A:HEM302
|
4.3
|
53.9
|
1.0
|
CG
|
A:HIS100
|
4.6
|
51.8
|
1.0
|
CG
|
A:HIS202
|
4.7
|
53.8
|
1.0
|
ND1
|
A:HIS100
|
4.7
|
51.8
|
1.0
|
ND1
|
A:HIS202
|
4.8
|
53.8
|
1.0
|
|
Iron binding site 3 out
of 12 in 7zyv
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Iron Binding Sites List in 7zyv
Iron binding site 3 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:57.0
occ:1.00
|
FE
|
A:HEC303
|
0.0
|
57.0
|
1.0
|
NC
|
A:HEC303
|
2.1
|
57.0
|
1.0
|
NA
|
A:HEC303
|
2.1
|
57.0
|
1.0
|
NB
|
A:HEC303
|
2.1
|
57.0
|
1.0
|
ND
|
A:HEC303
|
2.1
|
57.0
|
1.0
|
C4A
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C4C
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C1B
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C1A
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C1D
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C4D
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C1C
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
C4B
|
A:HEC303
|
3.1
|
57.0
|
1.0
|
CHD
|
A:HEC303
|
3.4
|
57.0
|
1.0
|
CHB
|
A:HEC303
|
3.4
|
57.0
|
1.0
|
CHA
|
A:HEC303
|
3.4
|
57.0
|
1.0
|
CHC
|
A:HEC303
|
3.5
|
57.0
|
1.0
|
CZ
|
B:PHE40
|
4.0
|
59.3
|
1.0
|
CE2
|
B:PHE40
|
4.2
|
59.3
|
1.0
|
C3A
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C2A
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C3C
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C2B
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C2C
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C3B
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C2D
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
C3D
|
A:HEC303
|
4.3
|
57.0
|
1.0
|
O1A
|
A:HEM302
|
4.8
|
53.9
|
1.0
|
CMA
|
A:HEM302
|
4.9
|
53.9
|
1.0
|
O
|
A:TYR34
|
4.9
|
55.0
|
1.0
|
CE1
|
B:PHE40
|
4.9
|
59.3
|
1.0
|
|
Iron binding site 4 out
of 12 in 7zyv
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Iron Binding Sites List in 7zyv
Iron binding site 4 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:85.7
occ:1.00
|
FE
|
C:HEC301
|
0.0
|
85.7
|
1.0
|
NA
|
C:HEC301
|
2.0
|
85.7
|
1.0
|
NC
|
C:HEC301
|
2.0
|
85.7
|
1.0
|
NB
|
C:HEC301
|
2.1
|
85.7
|
1.0
|
ND
|
C:HEC301
|
2.1
|
85.7
|
1.0
|
N
|
C:TYR1
|
2.5
|
83.2
|
1.0
|
NE2
|
C:HIS25
|
2.6
|
81.9
|
1.0
|
C4C
|
C:HEC301
|
3.0
|
85.7
|
1.0
|
C1A
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C1C
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C4B
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C4A
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C1D
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C1B
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
C4D
|
C:HEC301
|
3.1
|
85.7
|
1.0
|
CHD
|
C:HEC301
|
3.4
|
85.7
|
1.0
|
CHA
|
C:HEC301
|
3.4
|
85.7
|
1.0
|
CHC
|
C:HEC301
|
3.4
|
85.7
|
1.0
|
CHB
|
C:HEC301
|
3.4
|
85.7
|
1.0
|
CD2
|
C:HIS25
|
3.5
|
81.9
|
1.0
|
CA
|
C:TYR1
|
3.6
|
83.2
|
1.0
|
CE1
|
C:HIS25
|
3.6
|
81.9
|
1.0
|
C
|
C:TYR1
|
4.1
|
83.2
|
1.0
|
O
|
C:TYR1
|
4.2
|
83.2
|
1.0
|
C3C
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C2C
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C2A
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C3B
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C2B
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C3A
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C2D
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
C3D
|
C:HEC301
|
4.3
|
85.7
|
1.0
|
ND1
|
C:HIS25
|
4.7
|
81.9
|
1.0
|
CG
|
C:HIS25
|
4.7
|
81.9
|
1.0
|
CB
|
C:TYR1
|
4.9
|
83.2
|
1.0
|
OD1
|
C:ASN153
|
4.9
|
81.7
|
1.0
|
CD2
|
C:PHE4
|
4.9
|
82.6
|
1.0
|
|
Iron binding site 5 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 5 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:105.1
occ:1.00
|
FE1
|
D:FES202
|
0.0
|
105.1
|
1.0
|
S2
|
D:FES202
|
2.2
|
105.1
|
1.0
|
S1
|
D:FES202
|
2.2
|
105.1
|
1.0
|
SG
|
D:CYS107
|
2.3
|
96.2
|
1.0
|
SG
|
D:CYS125
|
2.3
|
95.7
|
1.0
|
FE2
|
D:FES202
|
2.7
|
105.1
|
1.0
|
CB
|
D:CYS107
|
3.2
|
96.2
|
1.0
|
CB
|
D:CYS125
|
3.3
|
95.7
|
1.0
|
OG
|
D:SER130
|
4.1
|
99.7
|
1.0
|
CB
|
D:HIS109
|
4.2
|
96.0
|
1.0
|
CB
|
D:CYS127
|
4.5
|
94.4
|
1.0
|
CB
|
D:CYS112
|
4.6
|
93.9
|
1.0
|
CA
|
D:CYS107
|
4.6
|
96.2
|
1.0
|
SG
|
D:CYS112
|
4.7
|
93.9
|
1.0
|
CB
|
D:SER130
|
4.7
|
99.7
|
1.0
|
ND1
|
D:HIS109
|
4.8
|
96.0
|
1.0
|
CA
|
D:CYS125
|
4.8
|
95.7
|
1.0
|
N
|
D:HIS128
|
4.9
|
93.7
|
1.0
|
N
|
D:HIS109
|
4.9
|
96.0
|
1.0
|
N
|
D:LEU110
|
4.9
|
95.2
|
1.0
|
CG
|
D:HIS109
|
5.0
|
96.0
|
1.0
|
N
|
D:CYS112
|
5.0
|
93.9
|
1.0
|
|
Iron binding site 6 out
of 12 in 7zyv
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Iron Binding Sites List in 7zyv
Iron binding site 6 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:105.1
occ:1.00
|
FE2
|
D:FES202
|
0.0
|
105.1
|
1.0
|
S2
|
D:FES202
|
2.2
|
105.1
|
1.0
|
S1
|
D:FES202
|
2.2
|
105.1
|
1.0
|
ND1
|
D:HIS128
|
2.6
|
93.7
|
1.0
|
ND1
|
D:HIS109
|
2.7
|
96.0
|
1.0
|
FE1
|
D:FES202
|
2.7
|
105.1
|
1.0
|
CG
|
D:HIS128
|
3.4
|
93.7
|
1.0
|
CB
|
D:HIS128
|
3.4
|
93.7
|
1.0
|
CG
|
D:HIS109
|
3.5
|
96.0
|
1.0
|
CB
|
D:HIS109
|
3.6
|
96.0
|
1.0
|
CE1
|
D:HIS128
|
3.6
|
93.7
|
1.0
|
CE1
|
D:HIS109
|
3.7
|
96.0
|
1.0
|
N
|
D:HIS128
|
3.7
|
93.7
|
1.0
|
CB
|
D:CYS127
|
3.8
|
94.4
|
1.0
|
CA
|
D:HIS128
|
4.2
|
93.7
|
1.0
|
SG
|
D:CYS125
|
4.2
|
95.7
|
1.0
|
C
|
D:CYS127
|
4.4
|
94.4
|
1.0
|
N
|
D:LEU110
|
4.5
|
95.2
|
1.0
|
SG
|
D:CYS107
|
4.5
|
96.2
|
1.0
|
CD2
|
D:HIS128
|
4.6
|
93.7
|
1.0
|
CB
|
D:LEU110
|
4.6
|
95.2
|
1.0
|
OG
|
D:SER130
|
4.7
|
99.7
|
1.0
|
CA
|
D:CYS127
|
4.7
|
94.4
|
1.0
|
NE2
|
D:HIS128
|
4.7
|
93.7
|
1.0
|
CD2
|
D:HIS109
|
4.7
|
96.0
|
1.0
|
NE2
|
D:HIS109
|
4.8
|
96.0
|
1.0
|
CA
|
D:HIS109
|
4.9
|
96.0
|
1.0
|
SG
|
D:CYS112
|
4.9
|
93.9
|
1.0
|
C
|
D:HIS128
|
5.0
|
93.7
|
1.0
|
CG
|
D:LEU110
|
5.0
|
95.2
|
1.0
|
|
Iron binding site 7 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 7 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe301
b:53.1
occ:1.00
|
FE
|
I:HEM301
|
0.0
|
53.1
|
1.0
|
ND
|
I:HEM301
|
2.0
|
53.1
|
1.0
|
NC
|
I:HEM301
|
2.0
|
53.1
|
1.0
|
NB
|
I:HEM301
|
2.0
|
53.1
|
1.0
|
NA
|
I:HEM301
|
2.0
|
53.1
|
1.0
|
NE2
|
I:HIS187
|
2.6
|
52.3
|
1.0
|
NE2
|
I:HIS86
|
2.6
|
52.2
|
1.0
|
C4D
|
I:HEM301
|
3.0
|
53.1
|
1.0
|
C4B
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C1C
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C1A
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C1B
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C1D
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C4C
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
C4A
|
I:HEM301
|
3.1
|
53.1
|
1.0
|
CHA
|
I:HEM301
|
3.4
|
53.1
|
1.0
|
CHC
|
I:HEM301
|
3.4
|
53.1
|
1.0
|
CHB
|
I:HEM301
|
3.4
|
53.1
|
1.0
|
CHD
|
I:HEM301
|
3.4
|
53.1
|
1.0
|
CE1
|
I:HIS86
|
3.4
|
52.2
|
1.0
|
CE1
|
I:HIS187
|
3.5
|
52.3
|
1.0
|
CD2
|
I:HIS187
|
3.6
|
52.3
|
1.0
|
CD2
|
I:HIS86
|
3.7
|
52.2
|
1.0
|
C3D
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C2D
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C3B
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C2C
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C2B
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C2A
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C3C
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
C3A
|
I:HEM301
|
4.3
|
53.1
|
1.0
|
ND1
|
I:HIS187
|
4.6
|
52.3
|
1.0
|
ND1
|
I:HIS86
|
4.6
|
52.2
|
1.0
|
CG
|
I:HIS187
|
4.7
|
52.3
|
1.0
|
CG
|
I:HIS86
|
4.8
|
52.2
|
1.0
|
NE2
|
I:GLN47
|
5.0
|
53.2
|
1.0
|
|
Iron binding site 8 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 8 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe302
b:54.2
occ:1.00
|
FE
|
I:HEM302
|
0.0
|
54.2
|
1.0
|
NB
|
I:HEM302
|
2.0
|
54.2
|
1.0
|
NC
|
I:HEM302
|
2.0
|
54.2
|
1.0
|
NA
|
I:HEM302
|
2.0
|
54.2
|
1.0
|
ND
|
I:HEM302
|
2.0
|
54.2
|
1.0
|
NE2
|
I:HIS100
|
2.6
|
52.2
|
1.0
|
NE2
|
I:HIS202
|
2.7
|
53.9
|
1.0
|
C4B
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C1B
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C1C
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C4C
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C4A
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C4D
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C1D
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
C1A
|
I:HEM302
|
3.1
|
54.2
|
1.0
|
CD2
|
I:HIS100
|
3.4
|
52.2
|
1.0
|
CHB
|
I:HEM302
|
3.4
|
54.2
|
1.0
|
CHC
|
I:HEM302
|
3.4
|
54.2
|
1.0
|
CHD
|
I:HEM302
|
3.4
|
54.2
|
1.0
|
CHA
|
I:HEM302
|
3.4
|
54.2
|
1.0
|
CD2
|
I:HIS202
|
3.4
|
53.9
|
1.0
|
CE1
|
I:HIS100
|
3.7
|
52.2
|
1.0
|
CE1
|
I:HIS202
|
3.8
|
53.9
|
1.0
|
C3B
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C2B
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C2C
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C3C
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C3D
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C2D
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C3A
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
C2A
|
I:HEM302
|
4.3
|
54.2
|
1.0
|
CG
|
I:HIS100
|
4.6
|
52.2
|
1.0
|
CG
|
I:HIS202
|
4.7
|
53.9
|
1.0
|
ND1
|
I:HIS100
|
4.7
|
52.2
|
1.0
|
ND1
|
I:HIS202
|
4.8
|
53.9
|
1.0
|
|
Iron binding site 9 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 9 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe303
b:56.9
occ:1.00
|
FE
|
I:HEC303
|
0.0
|
56.9
|
1.0
|
NC
|
I:HEC303
|
2.1
|
56.9
|
1.0
|
NA
|
I:HEC303
|
2.1
|
56.9
|
1.0
|
NB
|
I:HEC303
|
2.1
|
56.9
|
1.0
|
ND
|
I:HEC303
|
2.1
|
56.9
|
1.0
|
C4A
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C4C
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C1B
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C1A
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C1D
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C4D
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C1C
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
C4B
|
I:HEC303
|
3.1
|
56.9
|
1.0
|
CHD
|
I:HEC303
|
3.4
|
56.9
|
1.0
|
CHB
|
I:HEC303
|
3.4
|
56.9
|
1.0
|
CHA
|
I:HEC303
|
3.4
|
56.9
|
1.0
|
CHC
|
I:HEC303
|
3.5
|
56.9
|
1.0
|
CZ
|
J:PHE40
|
4.0
|
59.1
|
1.0
|
CE2
|
J:PHE40
|
4.2
|
59.1
|
1.0
|
C3A
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C2A
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C3C
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C2B
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C2C
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C3B
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C2D
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
C3D
|
I:HEC303
|
4.3
|
56.9
|
1.0
|
O1A
|
I:HEM302
|
4.8
|
54.2
|
1.0
|
CMA
|
I:HEM302
|
4.9
|
54.2
|
1.0
|
O
|
I:TYR34
|
4.9
|
55.6
|
1.0
|
CE1
|
J:PHE40
|
4.9
|
59.1
|
1.0
|
|
Iron binding site 10 out
of 12 in 7zyv
Go back to
Iron Binding Sites List in 7zyv
Iron binding site 10 out
of 12 in the Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of Catalytically Active Spinacia Oleracea Cytochrome B6F in Complex with Endogenous Plastoquinones at 2.13 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Fe301
b:85.8
occ:1.00
|
FE
|
K:HEC301
|
0.0
|
85.8
|
1.0
|
NA
|
K:HEC301
|
2.0
|
85.8
|
1.0
|
NC
|
K:HEC301
|
2.0
|
85.8
|
1.0
|
NB
|
K:HEC301
|
2.1
|
85.8
|
1.0
|
ND
|
K:HEC301
|
2.1
|
85.8
|
1.0
|
N
|
K:TYR1
|
2.5
|
83.1
|
1.0
|
NE2
|
K:HIS25
|
2.6
|
82.5
|
1.0
|
C4C
|
K:HEC301
|
3.0
|
85.8
|
1.0
|
C1A
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C1C
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C4B
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C1D
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C4A
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C1B
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
C4D
|
K:HEC301
|
3.1
|
85.8
|
1.0
|
CHD
|
K:HEC301
|
3.4
|
85.8
|
1.0
|
CHA
|
K:HEC301
|
3.4
|
85.8
|
1.0
|
CHC
|
K:HEC301
|
3.4
|
85.8
|
1.0
|
CHB
|
K:HEC301
|
3.4
|
85.8
|
1.0
|
CD2
|
K:HIS25
|
3.5
|
82.5
|
1.0
|
CA
|
K:TYR1
|
3.6
|
83.1
|
1.0
|
CE1
|
K:HIS25
|
3.6
|
82.5
|
1.0
|
C
|
K:TYR1
|
4.1
|
83.1
|
1.0
|
O
|
K:TYR1
|
4.2
|
83.1
|
1.0
|
C3C
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C2C
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C2A
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C3B
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C2B
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C3A
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C2D
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
C3D
|
K:HEC301
|
4.3
|
85.8
|
1.0
|
ND1
|
K:HIS25
|
4.7
|
82.5
|
1.0
|
CG
|
K:HIS25
|
4.7
|
82.5
|
1.0
|
CB
|
K:TYR1
|
4.9
|
83.1
|
1.0
|
OD1
|
K:ASN153
|
4.9
|
81.9
|
1.0
|
CD2
|
K:PHE4
|
4.9
|
82.8
|
1.0
|
|
Reference:
M.Sarewicz,
M.Szwalec,
S.Pintscher,
P.Indyka,
M.Rawski,
R.Pietras,
B.Mielecki,
L.Koziej,
M.Jaciuk,
S.Glatt,
A.Osyczka.
High-Resolution Cryo-Em Structures of Plant Cytochrome B 6 F at Work. Sci Adv V. 9 D9688 2023.
ISSN: ESSN 2375-2548
PubMed: 36638176
DOI: 10.1126/SCIADV.ADD9688
Page generated: Fri Aug 9 15:47:58 2024
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