Iron in PDB 8a6w: Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone
Enzymatic activity of Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone
All present enzymatic activity of Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone:
1.14.15.28;
Protein crystallography data
The structure of Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone, PDB code: 8a6w
was solved by
M.Snee,
C.Amadi,
C.Levy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
58.70 /
2.09
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.81,
128.13,
146.6,
90,
90,
90
|
R / Rfree (%)
|
20.1 /
23.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone
(pdb code 8a6w). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone, PDB code: 8a6w:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 8a6w
Go back to
Iron Binding Sites List in 8a6w
Iron binding site 1 out
of 2 in the Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe402
b:19.9
occ:1.00
|
FE
|
B:HEM402
|
0.0
|
19.9
|
1.0
|
NB
|
B:HEM402
|
2.0
|
18.0
|
1.0
|
ND
|
B:HEM402
|
2.0
|
20.1
|
1.0
|
NC
|
B:HEM402
|
2.1
|
18.6
|
1.0
|
NA
|
B:HEM402
|
2.1
|
23.3
|
1.0
|
SG
|
B:CYS340
|
2.4
|
23.3
|
1.0
|
C4B
|
B:HEM402
|
3.0
|
22.1
|
1.0
|
C1C
|
B:HEM402
|
3.0
|
17.9
|
1.0
|
C4D
|
B:HEM402
|
3.1
|
25.2
|
1.0
|
C1D
|
B:HEM402
|
3.1
|
21.3
|
1.0
|
C1B
|
B:HEM402
|
3.1
|
19.2
|
1.0
|
C4C
|
B:HEM402
|
3.1
|
17.7
|
1.0
|
C1A
|
B:HEM402
|
3.1
|
17.7
|
1.0
|
C4A
|
B:HEM402
|
3.1
|
24.9
|
1.0
|
HB2
|
B:CYS340
|
3.2
|
32.6
|
1.0
|
H273
|
B:K2B401
|
3.3
|
36.6
|
1.0
|
CB
|
B:CYS340
|
3.4
|
27.1
|
1.0
|
CHC
|
B:HEM402
|
3.4
|
19.6
|
1.0
|
CHA
|
B:HEM402
|
3.4
|
25.2
|
1.0
|
CHD
|
B:HEM402
|
3.4
|
19.4
|
1.0
|
CHB
|
B:HEM402
|
3.5
|
17.9
|
1.0
|
HA
|
B:CYS340
|
3.6
|
35.2
|
1.0
|
H
|
B:GLY342
|
3.8
|
24.4
|
1.0
|
CA
|
B:CYS340
|
4.0
|
29.3
|
1.0
|
H
|
B:LEU341
|
4.2
|
32.1
|
1.0
|
C27
|
B:K2B401
|
4.2
|
30.5
|
1.0
|
HB3
|
B:CYS340
|
4.2
|
32.6
|
1.0
|
H272
|
B:K2B401
|
4.2
|
36.6
|
1.0
|
C2C
|
B:HEM402
|
4.3
|
20.9
|
1.0
|
C3B
|
B:HEM402
|
4.3
|
18.6
|
1.0
|
C2B
|
B:HEM402
|
4.3
|
21.9
|
1.0
|
C3D
|
B:HEM402
|
4.3
|
23.5
|
1.0
|
C2D
|
B:HEM402
|
4.3
|
22.9
|
1.0
|
C3C
|
B:HEM402
|
4.3
|
22.3
|
1.0
|
C3A
|
B:HEM402
|
4.3
|
20.2
|
1.0
|
C2A
|
B:HEM402
|
4.3
|
22.4
|
1.0
|
HD1
|
B:PHE333
|
4.3
|
28.2
|
1.0
|
HHC
|
B:HEM402
|
4.4
|
23.5
|
1.0
|
HHA
|
B:HEM402
|
4.4
|
30.3
|
1.0
|
HHD
|
B:HEM402
|
4.4
|
23.4
|
1.0
|
HHB
|
B:HEM402
|
4.4
|
21.2
|
1.0
|
HG21
|
B:THR234
|
4.5
|
24.6
|
1.0
|
H271
|
B:K2B401
|
4.5
|
36.6
|
1.0
|
N
|
B:LEU341
|
4.6
|
26.8
|
1.0
|
HA3
|
B:GLY230
|
4.6
|
33.1
|
1.0
|
C
|
B:CYS340
|
4.6
|
24.6
|
1.0
|
HA2
|
B:GLY230
|
4.7
|
33.1
|
1.0
|
N
|
B:GLY342
|
4.7
|
20.3
|
1.0
|
O
|
B:GLY230
|
4.8
|
25.8
|
1.0
|
HA3
|
B:GLY342
|
5.0
|
28.3
|
1.0
|
|
Iron binding site 2 out
of 2 in 8a6w
Go back to
Iron Binding Sites List in 8a6w
Iron binding site 2 out
of 2 in the Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe402
b:20.1
occ:1.00
|
FE
|
E:HEM402
|
0.0
|
20.1
|
1.0
|
NB
|
E:HEM402
|
2.0
|
21.4
|
1.0
|
NC
|
E:HEM402
|
2.0
|
19.0
|
1.0
|
ND
|
E:HEM402
|
2.0
|
18.8
|
1.0
|
NA
|
E:HEM402
|
2.1
|
21.1
|
1.0
|
SG
|
E:CYS340
|
2.4
|
24.8
|
1.0
|
C4B
|
E:HEM402
|
3.0
|
18.6
|
1.0
|
C1C
|
E:HEM402
|
3.0
|
16.8
|
1.0
|
C1B
|
E:HEM402
|
3.0
|
21.4
|
1.0
|
C1D
|
E:HEM402
|
3.1
|
22.0
|
1.0
|
C4C
|
E:HEM402
|
3.1
|
22.0
|
1.0
|
C4A
|
E:HEM402
|
3.1
|
23.2
|
1.0
|
C4D
|
E:HEM402
|
3.1
|
21.0
|
1.0
|
C1A
|
E:HEM402
|
3.1
|
21.1
|
1.0
|
HB2
|
E:CYS340
|
3.1
|
29.2
|
1.0
|
CB
|
E:CYS340
|
3.3
|
24.3
|
1.0
|
H273
|
E:K2B401
|
3.3
|
31.2
|
1.0
|
CHC
|
E:HEM402
|
3.4
|
21.1
|
1.0
|
CHD
|
E:HEM402
|
3.4
|
18.5
|
1.0
|
CHB
|
E:HEM402
|
3.4
|
23.2
|
1.0
|
CHA
|
E:HEM402
|
3.5
|
20.7
|
1.0
|
HA
|
E:CYS340
|
3.5
|
25.7
|
1.0
|
H
|
E:GLY342
|
3.8
|
26.3
|
1.0
|
CA
|
E:CYS340
|
3.9
|
21.4
|
1.0
|
H271
|
E:K2B401
|
4.0
|
31.2
|
1.0
|
H
|
E:LEU341
|
4.0
|
29.8
|
1.0
|
C27
|
E:K2B401
|
4.0
|
26.0
|
1.0
|
HB3
|
E:CYS340
|
4.1
|
29.2
|
1.0
|
C2C
|
E:HEM402
|
4.3
|
19.4
|
1.0
|
C3B
|
E:HEM402
|
4.3
|
24.1
|
1.0
|
C2B
|
E:HEM402
|
4.3
|
20.4
|
1.0
|
C3C
|
E:HEM402
|
4.3
|
25.8
|
1.0
|
C2D
|
E:HEM402
|
4.3
|
24.8
|
1.0
|
HD1
|
E:PHE333
|
4.3
|
26.4
|
1.0
|
H272
|
E:K2B401
|
4.3
|
31.2
|
1.0
|
C3D
|
E:HEM402
|
4.3
|
25.8
|
1.0
|
C3A
|
E:HEM402
|
4.3
|
21.3
|
1.0
|
C2A
|
E:HEM402
|
4.3
|
21.8
|
1.0
|
HHC
|
E:HEM402
|
4.4
|
25.4
|
1.0
|
HHD
|
E:HEM402
|
4.4
|
22.3
|
1.0
|
HHB
|
E:HEM402
|
4.4
|
27.9
|
1.0
|
HHA
|
E:HEM402
|
4.4
|
24.8
|
1.0
|
HA3
|
E:GLY230
|
4.4
|
33.5
|
1.0
|
N
|
E:LEU341
|
4.5
|
24.8
|
1.0
|
HG21
|
E:THR234
|
4.5
|
29.6
|
1.0
|
C
|
E:CYS340
|
4.6
|
25.1
|
1.0
|
HA2
|
E:GLY230
|
4.6
|
33.5
|
1.0
|
N
|
E:GLY342
|
4.7
|
21.9
|
1.0
|
O
|
E:GLY230
|
4.8
|
28.1
|
1.0
|
H263
|
E:K2B401
|
4.9
|
30.1
|
1.0
|
CA
|
E:GLY230
|
4.9
|
27.9
|
1.0
|
|
Reference:
M.Snee,
C.Amadi.
Crystal Structure of CYP142 From Mycobacterium Tuberculosis in Complex with Cholestenone To Be Published.
Page generated: Fri Aug 9 16:11:31 2024
|