Iron in PDB 8ab7: Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
Enzymatic activity of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
All present enzymatic activity of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound:
7.1.1.8;
Other elements in 8ab7:
The structure of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
(pdb code 8ab7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound, PDB code: 8ab7:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 1 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:22.0
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
22.0
|
1.0
|
|
ND
|
C:HEM501
|
1.9
|
22.7
|
1.0
|
|
NA
|
C:HEM501
|
1.9
|
23.9
|
1.0
|
|
NE2
|
C:HIS82
|
2.0
|
22.2
|
1.0
|
|
NC
|
C:HEM501
|
2.0
|
24.0
|
1.0
|
|
NB
|
C:HEM501
|
2.1
|
24.4
|
1.0
|
|
NE2
|
C:HIS183
|
2.1
|
21.5
|
1.0
|
|
C1D
|
C:HEM501
|
2.9
|
22.4
|
1.0
|
|
C4D
|
C:HEM501
|
2.9
|
23.6
|
1.0
|
|
C1A
|
C:HEM501
|
2.9
|
24.4
|
1.0
|
|
CE1
|
C:HIS82
|
2.9
|
22.6
|
1.0
|
|
C4A
|
C:HEM501
|
3.0
|
25.6
|
1.0
|
|
CD2
|
C:HIS82
|
3.0
|
22.9
|
1.0
|
|
C4C
|
C:HEM501
|
3.0
|
24.6
|
1.0
|
|
C4B
|
C:HEM501
|
3.0
|
25.7
|
1.0
|
|
CE1
|
C:HIS183
|
3.0
|
22.5
|
1.0
|
|
C1B
|
C:HEM501
|
3.0
|
25.8
|
1.0
|
|
C1C
|
C:HEM501
|
3.0
|
25.2
|
1.0
|
|
CD2
|
C:HIS183
|
3.1
|
23.2
|
1.0
|
|
CHA
|
C:HEM501
|
3.3
|
23.9
|
1.0
|
|
CHD
|
C:HEM501
|
3.3
|
23.2
|
1.0
|
|
CHB
|
C:HEM501
|
3.4
|
24.8
|
1.0
|
|
CHC
|
C:HEM501
|
3.5
|
24.8
|
1.0
|
|
ND1
|
C:HIS82
|
4.1
|
22.8
|
1.0
|
|
C2A
|
C:HEM501
|
4.1
|
27.7
|
1.0
|
|
CG
|
C:HIS82
|
4.1
|
22.2
|
1.0
|
|
C2D
|
C:HEM501
|
4.1
|
23.5
|
1.0
|
|
C3A
|
C:HEM501
|
4.1
|
28.3
|
1.0
|
|
C3D
|
C:HEM501
|
4.1
|
24.1
|
1.0
|
|
ND1
|
C:HIS183
|
4.1
|
23.8
|
1.0
|
|
CG
|
C:HIS183
|
4.2
|
24.4
|
1.0
|
|
C3B
|
C:HEM501
|
4.2
|
29.9
|
1.0
|
|
C3C
|
C:HEM501
|
4.2
|
25.5
|
1.0
|
|
C2C
|
C:HEM501
|
4.2
|
25.1
|
1.0
|
|
C2B
|
C:HEM501
|
4.3
|
28.7
|
1.0
|
|
CA
|
C:GLY131
|
4.7
|
33.8
|
1.0
|
|
NE2
|
C:GLN43
|
4.8
|
40.8
|
1.0
|
|
CA
|
C:GLY47
|
4.9
|
28.4
|
1.0
|
|
Iron binding site 2 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 2 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:21.1
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
21.1
|
1.0
|
|
ND
|
C:HEM502
|
1.9
|
23.7
|
1.0
|
|
NA
|
C:HEM502
|
2.0
|
22.4
|
1.0
|
|
NC
|
C:HEM502
|
2.0
|
23.4
|
1.0
|
|
NB
|
C:HEM502
|
2.1
|
24.1
|
1.0
|
|
NE2
|
C:HIS197
|
2.1
|
22.5
|
1.0
|
|
NE2
|
C:HIS96
|
2.2
|
30.7
|
1.0
|
|
C1D
|
C:HEM502
|
2.9
|
24.2
|
1.0
|
|
C4C
|
C:HEM502
|
2.9
|
24.1
|
1.0
|
|
C4D
|
C:HEM502
|
2.9
|
23.8
|
1.0
|
|
C1A
|
C:HEM502
|
3.0
|
22.8
|
1.0
|
|
C4A
|
C:HEM502
|
3.0
|
22.3
|
1.0
|
|
CE1
|
C:HIS197
|
3.0
|
23.0
|
1.0
|
|
C1C
|
C:HEM502
|
3.0
|
25.8
|
1.0
|
|
C1B
|
C:HEM502
|
3.0
|
25.4
|
1.0
|
|
C4B
|
C:HEM502
|
3.0
|
25.9
|
1.0
|
|
CD2
|
C:HIS96
|
3.1
|
31.0
|
1.0
|
|
CE1
|
C:HIS96
|
3.2
|
35.0
|
1.0
|
|
CD2
|
C:HIS197
|
3.2
|
23.5
|
1.0
|
|
CHD
|
C:HEM502
|
3.3
|
24.3
|
1.0
|
|
CHA
|
C:HEM502
|
3.4
|
23.3
|
1.0
|
|
CHB
|
C:HEM502
|
3.4
|
23.4
|
1.0
|
|
CHC
|
C:HEM502
|
3.5
|
27.0
|
1.0
|
|
C3C
|
C:HEM502
|
4.1
|
25.1
|
1.0
|
|
C2A
|
C:HEM502
|
4.1
|
24.8
|
1.0
|
|
C2D
|
C:HEM502
|
4.1
|
24.2
|
1.0
|
|
C3D
|
C:HEM502
|
4.1
|
25.6
|
1.0
|
|
C3A
|
C:HEM502
|
4.2
|
23.1
|
1.0
|
|
C2C
|
C:HEM502
|
4.2
|
24.6
|
1.0
|
|
ND1
|
C:HIS197
|
4.2
|
24.4
|
1.0
|
|
CG
|
C:HIS96
|
4.2
|
32.1
|
1.0
|
|
ND1
|
C:HIS96
|
4.2
|
36.3
|
1.0
|
|
C2B
|
C:HEM502
|
4.3
|
26.2
|
1.0
|
|
CG
|
C:HIS197
|
4.3
|
25.5
|
1.0
|
|
C3B
|
C:HEM502
|
4.3
|
26.8
|
1.0
|
|
Iron binding site 3 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 3 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:35.6
occ:1.00
|
FE1
|
P:FES301
|
0.0
|
35.6
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
30.8
|
1.0
|
|
SG
|
P:CYS168
|
2.2
|
54.2
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
36.6
|
1.0
|
|
SG
|
P:CYS187
|
2.3
|
36.9
|
1.0
|
|
CB
|
P:CYS168
|
2.8
|
47.9
|
1.0
|
|
FE2
|
P:FES301
|
3.0
|
32.9
|
1.0
|
|
CB
|
P:CYS187
|
3.1
|
35.9
|
1.0
|
|
OG
|
P:SER192
|
3.7
|
54.1
|
1.0
|
|
CB
|
P:HIS170
|
3.7
|
41.7
|
1.0
|
|
CA
|
P:CYS168
|
4.2
|
47.1
|
1.0
|
|
N
|
P:LEU171
|
4.3
|
41.9
|
1.0
|
|
ND1
|
P:HIS170
|
4.4
|
42.6
|
1.0
|
|
N
|
P:HIS170
|
4.4
|
45.1
|
1.0
|
|
N
|
P:CYS173
|
4.4
|
36.0
|
1.0
|
|
ND1
|
P:HIS190
|
4.5
|
41.2
|
1.0
|
|
CA
|
P:CYS187
|
4.5
|
39.6
|
1.0
|
|
CB
|
P:CYS173
|
4.5
|
44.2
|
1.0
|
|
C
|
P:CYS168
|
4.5
|
43.2
|
1.0
|
|
CG
|
P:HIS170
|
4.6
|
43.1
|
1.0
|
|
CA
|
P:HIS170
|
4.6
|
42.0
|
1.0
|
|
CB
|
P:CYS189
|
4.6
|
47.5
|
1.0
|
|
N
|
P:GLY172
|
4.6
|
40.5
|
1.0
|
|
N
|
P:HIS190
|
4.7
|
40.6
|
1.0
|
|
O
|
P:CYS168
|
4.8
|
43.1
|
1.0
|
|
CB
|
P:SER192
|
4.8
|
51.4
|
1.0
|
|
Iron binding site 4 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 4 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:32.9
occ:1.00
|
FE2
|
P:FES301
|
0.0
|
32.9
|
1.0
|
|
ND1
|
P:HIS170
|
1.9
|
42.6
|
1.0
|
|
ND1
|
P:HIS190
|
2.1
|
41.2
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
30.8
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
36.6
|
1.0
|
|
CG
|
P:HIS190
|
2.8
|
39.9
|
1.0
|
|
CG
|
P:HIS170
|
2.8
|
43.1
|
1.0
|
|
CE1
|
P:HIS170
|
2.9
|
43.1
|
1.0
|
|
CB
|
P:HIS190
|
3.0
|
36.6
|
1.0
|
|
FE1
|
P:FES301
|
3.0
|
35.6
|
1.0
|
|
CB
|
P:HIS170
|
3.1
|
41.7
|
1.0
|
|
CE1
|
P:HIS190
|
3.1
|
43.2
|
1.0
|
|
N
|
P:HIS190
|
3.7
|
40.6
|
1.0
|
|
CA
|
P:HIS190
|
3.9
|
39.1
|
1.0
|
|
CD2
|
P:HIS190
|
3.9
|
43.1
|
1.0
|
|
N
|
P:LEU171
|
4.0
|
41.9
|
1.0
|
|
CD2
|
P:HIS170
|
4.0
|
44.3
|
1.0
|
|
NE2
|
P:HIS170
|
4.0
|
49.2
|
1.0
|
|
NE2
|
P:HIS190
|
4.1
|
44.4
|
1.0
|
|
CB
|
P:LEU171
|
4.2
|
43.1
|
1.0
|
|
CB
|
P:CYS189
|
4.3
|
47.5
|
1.0
|
|
CG
|
P:LEU171
|
4.4
|
50.2
|
1.0
|
|
CA
|
P:HIS170
|
4.4
|
42.0
|
1.0
|
|
SG
|
P:CYS187
|
4.5
|
36.9
|
1.0
|
|
C
|
P:CYS189
|
4.5
|
41.4
|
1.0
|
|
C
|
P:HIS170
|
4.6
|
43.1
|
1.0
|
|
SG
|
P:CYS168
|
4.6
|
54.2
|
1.0
|
|
C
|
P:HIS190
|
4.7
|
41.5
|
1.0
|
|
CA
|
P:LEU171
|
4.7
|
41.8
|
1.0
|
|
CD1
|
P:LEU171
|
4.7
|
59.0
|
1.0
|
|
CG
|
P:PRO204
|
4.8
|
58.9
|
1.0
|
|
CB
|
P:PRO204
|
5.0
|
45.9
|
1.0
|
|
Iron binding site 5 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 5 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:39.4
occ:1.00
|
FE
|
D:HEC401
|
0.0
|
39.4
|
1.0
|
|
NE2
|
D:HIS128
|
2.0
|
37.0
|
1.0
|
|
NB
|
D:HEC401
|
2.0
|
39.9
|
1.0
|
|
NC
|
D:HEC401
|
2.0
|
44.7
|
1.0
|
|
NA
|
D:HEC401
|
2.0
|
38.9
|
1.0
|
|
ND
|
D:HEC401
|
2.0
|
43.3
|
1.0
|
|
SD
|
D:MET248
|
2.2
|
42.4
|
1.0
|
|
CE1
|
D:HIS128
|
2.9
|
36.6
|
1.0
|
|
C4B
|
D:HEC401
|
3.0
|
40.0
|
1.0
|
|
C4C
|
D:HEC401
|
3.0
|
47.6
|
1.0
|
|
C1B
|
D:HEC401
|
3.0
|
40.5
|
1.0
|
|
CD2
|
D:HIS128
|
3.0
|
42.0
|
1.0
|
|
C4A
|
D:HEC401
|
3.0
|
39.0
|
1.0
|
|
C1A
|
D:HEC401
|
3.0
|
39.2
|
1.0
|
|
C1C
|
D:HEC401
|
3.0
|
47.2
|
1.0
|
|
C4D
|
D:HEC401
|
3.0
|
44.7
|
1.0
|
|
C1D
|
D:HEC401
|
3.0
|
44.2
|
1.0
|
|
CE
|
D:MET248
|
3.3
|
45.6
|
1.0
|
|
CHD
|
D:HEC401
|
3.4
|
45.3
|
1.0
|
|
CHB
|
D:HEC401
|
3.4
|
39.4
|
1.0
|
|
CHC
|
D:HEC401
|
3.4
|
42.1
|
1.0
|
|
CHA
|
D:HEC401
|
3.4
|
42.4
|
1.0
|
|
CG
|
D:MET248
|
3.4
|
46.9
|
1.0
|
|
CB
|
D:MET248
|
4.0
|
46.8
|
1.0
|
|
ND1
|
D:HIS128
|
4.1
|
39.9
|
1.0
|
|
CG
|
D:HIS128
|
4.1
|
40.3
|
1.0
|
|
C3B
|
D:HEC401
|
4.2
|
38.9
|
1.0
|
|
C3C
|
D:HEC401
|
4.3
|
50.1
|
1.0
|
|
C3A
|
D:HEC401
|
4.3
|
41.2
|
1.0
|
|
C2B
|
D:HEC401
|
4.3
|
39.6
|
1.0
|
|
C2A
|
D:HEC401
|
4.3
|
40.4
|
1.0
|
|
C2C
|
D:HEC401
|
4.3
|
52.2
|
1.0
|
|
C3D
|
D:HEC401
|
4.3
|
44.6
|
1.0
|
|
C2D
|
D:HEC401
|
4.3
|
44.8
|
1.0
|
|
Iron binding site 6 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 6 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe501
b:22.0
occ:1.00
|
FE
|
N:HEM501
|
0.0
|
22.0
|
1.0
|
|
ND
|
N:HEM501
|
1.9
|
22.7
|
1.0
|
|
NA
|
N:HEM501
|
1.9
|
23.9
|
1.0
|
|
NE2
|
N:HIS82
|
2.0
|
22.4
|
1.0
|
|
NC
|
N:HEM501
|
2.0
|
23.9
|
1.0
|
|
NB
|
N:HEM501
|
2.1
|
24.3
|
1.0
|
|
NE2
|
N:HIS183
|
2.1
|
21.2
|
1.0
|
|
C1D
|
N:HEM501
|
2.9
|
22.4
|
1.0
|
|
C4D
|
N:HEM501
|
2.9
|
23.7
|
1.0
|
|
C1A
|
N:HEM501
|
2.9
|
24.5
|
1.0
|
|
CE1
|
N:HIS82
|
2.9
|
22.8
|
1.0
|
|
C4A
|
N:HEM501
|
3.0
|
25.7
|
1.0
|
|
C4B
|
N:HEM501
|
3.0
|
25.6
|
1.0
|
|
CD2
|
N:HIS82
|
3.0
|
23.1
|
1.0
|
|
C4C
|
N:HEM501
|
3.0
|
24.6
|
1.0
|
|
CE1
|
N:HIS183
|
3.0
|
22.2
|
1.0
|
|
C1B
|
N:HEM501
|
3.0
|
25.7
|
1.0
|
|
C1C
|
N:HEM501
|
3.0
|
25.2
|
1.0
|
|
CD2
|
N:HIS183
|
3.1
|
22.7
|
1.0
|
|
CHA
|
N:HEM501
|
3.3
|
24.0
|
1.0
|
|
CHD
|
N:HEM501
|
3.3
|
23.2
|
1.0
|
|
CHB
|
N:HEM501
|
3.4
|
24.9
|
1.0
|
|
CHC
|
N:HEM501
|
3.5
|
24.6
|
1.0
|
|
ND1
|
N:HIS82
|
4.1
|
23.0
|
1.0
|
|
C2A
|
N:HEM501
|
4.1
|
27.9
|
1.0
|
|
C2D
|
N:HEM501
|
4.1
|
23.5
|
1.0
|
|
CG
|
N:HIS82
|
4.1
|
22.4
|
1.0
|
|
C3D
|
N:HEM501
|
4.1
|
24.1
|
1.0
|
|
C3A
|
N:HEM501
|
4.1
|
28.6
|
1.0
|
|
ND1
|
N:HIS183
|
4.1
|
23.3
|
1.0
|
|
C3B
|
N:HEM501
|
4.2
|
29.6
|
1.0
|
|
CG
|
N:HIS183
|
4.2
|
23.9
|
1.0
|
|
C3C
|
N:HEM501
|
4.2
|
25.3
|
1.0
|
|
C2C
|
N:HEM501
|
4.2
|
25.0
|
1.0
|
|
C2B
|
N:HEM501
|
4.3
|
28.6
|
1.0
|
|
CA
|
N:GLY131
|
4.7
|
33.4
|
1.0
|
|
NE2
|
N:GLN43
|
4.8
|
40.7
|
1.0
|
|
CA
|
N:GLY47
|
5.0
|
28.5
|
1.0
|
|
Iron binding site 7 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 7 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe502
b:21.1
occ:1.00
|
FE
|
N:HEM502
|
0.0
|
21.1
|
1.0
|
|
ND
|
N:HEM502
|
1.9
|
23.5
|
1.0
|
|
NA
|
N:HEM502
|
2.0
|
22.2
|
1.0
|
|
NC
|
N:HEM502
|
2.0
|
23.0
|
1.0
|
|
NE2
|
N:HIS96
|
2.0
|
30.5
|
1.0
|
|
NB
|
N:HEM502
|
2.1
|
23.5
|
1.0
|
|
NE2
|
N:HIS197
|
2.1
|
22.6
|
1.0
|
|
C1D
|
N:HEM502
|
2.9
|
24.2
|
1.0
|
|
C4C
|
N:HEM502
|
2.9
|
23.8
|
1.0
|
|
C4D
|
N:HEM502
|
2.9
|
23.6
|
1.0
|
|
CE1
|
N:HIS96
|
2.9
|
32.5
|
1.0
|
|
C1A
|
N:HEM502
|
2.9
|
22.7
|
1.0
|
|
CE1
|
N:HIS197
|
3.0
|
23.2
|
1.0
|
|
C4A
|
N:HEM502
|
3.0
|
22.0
|
1.0
|
|
C1C
|
N:HEM502
|
3.0
|
25.1
|
1.0
|
|
C1B
|
N:HEM502
|
3.0
|
24.8
|
1.0
|
|
C4B
|
N:HEM502
|
3.0
|
25.2
|
1.0
|
|
CD2
|
N:HIS96
|
3.1
|
31.5
|
1.0
|
|
CD2
|
N:HIS197
|
3.2
|
23.7
|
1.0
|
|
CHD
|
N:HEM502
|
3.3
|
24.2
|
1.0
|
|
CHA
|
N:HEM502
|
3.3
|
23.1
|
1.0
|
|
CHB
|
N:HEM502
|
3.4
|
22.9
|
1.0
|
|
CHC
|
N:HEM502
|
3.5
|
26.0
|
1.0
|
|
C3C
|
N:HEM502
|
4.1
|
24.8
|
1.0
|
|
ND1
|
N:HIS96
|
4.1
|
32.8
|
1.0
|
|
C2A
|
N:HEM502
|
4.1
|
24.8
|
1.0
|
|
C2D
|
N:HEM502
|
4.1
|
24.2
|
1.0
|
|
C3D
|
N:HEM502
|
4.1
|
25.6
|
1.0
|
|
C3A
|
N:HEM502
|
4.1
|
23.1
|
1.0
|
|
ND1
|
N:HIS197
|
4.2
|
24.6
|
1.0
|
|
CG
|
N:HIS96
|
4.2
|
30.9
|
1.0
|
|
C2C
|
N:HEM502
|
4.2
|
24.1
|
1.0
|
|
CG
|
N:HIS197
|
4.3
|
25.8
|
1.0
|
|
C2B
|
N:HEM502
|
4.3
|
25.6
|
1.0
|
|
C3B
|
N:HEM502
|
4.3
|
26.3
|
1.0
|
|
Iron binding site 8 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 8 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe301
b:35.3
occ:1.00
|
FE1
|
E:FES301
|
0.0
|
35.3
|
1.0
|
|
S2
|
E:FES301
|
2.2
|
31.2
|
1.0
|
|
S1
|
E:FES301
|
2.2
|
36.2
|
1.0
|
|
SG
|
E:CYS168
|
2.2
|
54.8
|
1.0
|
|
SG
|
E:CYS187
|
2.3
|
36.4
|
1.0
|
|
CB
|
E:CYS168
|
2.8
|
48.0
|
1.0
|
|
FE2
|
E:FES301
|
3.0
|
33.5
|
1.0
|
|
CB
|
E:CYS187
|
3.1
|
35.8
|
1.0
|
|
OG
|
E:SER192
|
3.7
|
54.1
|
1.0
|
|
CB
|
E:HIS170
|
3.7
|
41.2
|
1.0
|
|
CA
|
E:CYS168
|
4.3
|
47.2
|
1.0
|
|
N
|
E:LEU171
|
4.3
|
41.2
|
1.0
|
|
ND1
|
E:HIS170
|
4.4
|
42.9
|
1.0
|
|
N
|
E:HIS170
|
4.4
|
44.8
|
1.0
|
|
N
|
E:CYS173
|
4.4
|
36.2
|
1.0
|
|
ND1
|
E:HIS190
|
4.5
|
41.4
|
1.0
|
|
CB
|
E:CYS173
|
4.5
|
46.0
|
1.0
|
|
CA
|
E:CYS187
|
4.5
|
39.4
|
1.0
|
|
C
|
E:CYS168
|
4.5
|
43.4
|
1.0
|
|
CG
|
E:HIS170
|
4.6
|
42.8
|
1.0
|
|
CA
|
E:HIS170
|
4.6
|
41.1
|
1.0
|
|
CB
|
E:CYS189
|
4.6
|
49.9
|
1.0
|
|
N
|
E:GLY172
|
4.6
|
39.5
|
1.0
|
|
N
|
E:HIS190
|
4.7
|
41.1
|
1.0
|
|
O
|
E:CYS168
|
4.8
|
43.0
|
1.0
|
|
CB
|
E:SER192
|
4.9
|
51.4
|
1.0
|
|
Iron binding site 9 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 9 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe301
b:33.5
occ:1.00
|
FE2
|
E:FES301
|
0.0
|
33.5
|
1.0
|
|
ND1
|
E:HIS170
|
1.9
|
42.9
|
1.0
|
|
ND1
|
E:HIS190
|
2.1
|
41.4
|
1.0
|
|
S2
|
E:FES301
|
2.2
|
31.2
|
1.0
|
|
S1
|
E:FES301
|
2.2
|
36.2
|
1.0
|
|
CG
|
E:HIS190
|
2.8
|
40.2
|
1.0
|
|
CG
|
E:HIS170
|
2.8
|
42.8
|
1.0
|
|
CE1
|
E:HIS170
|
2.9
|
43.5
|
1.0
|
|
CB
|
E:HIS190
|
3.0
|
36.9
|
1.0
|
|
FE1
|
E:FES301
|
3.0
|
35.3
|
1.0
|
|
CB
|
E:HIS170
|
3.1
|
41.2
|
1.0
|
|
CE1
|
E:HIS190
|
3.1
|
45.1
|
1.0
|
|
N
|
E:HIS190
|
3.7
|
41.1
|
1.0
|
|
CA
|
E:HIS190
|
3.9
|
39.3
|
1.0
|
|
CD2
|
E:HIS190
|
3.9
|
44.2
|
1.0
|
|
N
|
E:LEU171
|
4.0
|
41.2
|
1.0
|
|
CD2
|
E:HIS170
|
4.0
|
44.1
|
1.0
|
|
NE2
|
E:HIS170
|
4.0
|
49.5
|
1.0
|
|
NE2
|
E:HIS190
|
4.1
|
45.9
|
1.0
|
|
CB
|
E:LEU171
|
4.2
|
41.3
|
1.0
|
|
CB
|
E:CYS189
|
4.4
|
49.9
|
1.0
|
|
CG
|
E:LEU171
|
4.4
|
48.4
|
1.0
|
|
CA
|
E:HIS170
|
4.4
|
41.1
|
1.0
|
|
SG
|
E:CYS187
|
4.5
|
36.4
|
1.0
|
|
C
|
E:CYS189
|
4.5
|
42.1
|
1.0
|
|
C
|
E:HIS170
|
4.6
|
42.0
|
1.0
|
|
SG
|
E:CYS168
|
4.6
|
54.8
|
1.0
|
|
C
|
E:HIS190
|
4.7
|
41.5
|
1.0
|
|
CA
|
E:LEU171
|
4.7
|
40.5
|
1.0
|
|
CD1
|
E:LEU171
|
4.7
|
60.1
|
1.0
|
|
CG
|
E:PRO204
|
4.8
|
59.8
|
1.0
|
|
CB
|
E:PRO204
|
5.0
|
46.5
|
1.0
|
|
Iron binding site 10 out
of 10 in 8ab7
Go back to
Iron Binding Sites List in 8ab7
Iron binding site 10 out
of 10 in the Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Complex III2 From Yarrowia Lipolytica, Atovaquone and Antimycin A Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe401
b:39.4
occ:1.00
|
FE
|
O:HEC401
|
0.0
|
39.4
|
1.0
|
|
NE2
|
O:HIS128
|
2.0
|
37.1
|
1.0
|
|
NB
|
O:HEC401
|
2.0
|
39.9
|
1.0
|
|
NA
|
O:HEC401
|
2.0
|
38.9
|
1.0
|
|
NC
|
O:HEC401
|
2.0
|
44.7
|
1.0
|
|
ND
|
O:HEC401
|
2.0
|
43.3
|
1.0
|
|
SD
|
O:MET248
|
2.2
|
42.4
|
1.0
|
|
CE1
|
O:HIS128
|
2.9
|
36.8
|
1.0
|
|
C4B
|
O:HEC401
|
3.0
|
39.9
|
1.0
|
|
C4C
|
O:HEC401
|
3.0
|
47.6
|
1.0
|
|
C1B
|
O:HEC401
|
3.0
|
40.5
|
1.0
|
|
CD2
|
O:HIS128
|
3.0
|
42.3
|
1.0
|
|
C4A
|
O:HEC401
|
3.0
|
39.1
|
1.0
|
|
C1A
|
O:HEC401
|
3.0
|
39.3
|
1.0
|
|
C1C
|
O:HEC401
|
3.0
|
47.2
|
1.0
|
|
C4D
|
O:HEC401
|
3.0
|
44.8
|
1.0
|
|
C1D
|
O:HEC401
|
3.0
|
44.4
|
1.0
|
|
CE
|
O:MET248
|
3.3
|
45.5
|
1.0
|
|
CHD
|
O:HEC401
|
3.4
|
45.4
|
1.0
|
|
CHB
|
O:HEC401
|
3.4
|
39.4
|
1.0
|
|
CHC
|
O:HEC401
|
3.4
|
42.1
|
1.0
|
|
CHA
|
O:HEC401
|
3.4
|
42.5
|
1.0
|
|
CG
|
O:MET248
|
3.4
|
47.0
|
1.0
|
|
CB
|
O:MET248
|
4.0
|
46.9
|
1.0
|
|
ND1
|
O:HIS128
|
4.1
|
40.1
|
1.0
|
|
CG
|
O:HIS128
|
4.1
|
40.5
|
1.0
|
|
C3B
|
O:HEC401
|
4.2
|
38.8
|
1.0
|
|
C3C
|
O:HEC401
|
4.3
|
50.0
|
1.0
|
|
C3A
|
O:HEC401
|
4.3
|
41.3
|
1.0
|
|
C2A
|
O:HEC401
|
4.3
|
40.5
|
1.0
|
|
C2B
|
O:HEC401
|
4.3
|
39.6
|
1.0
|
|
C2C
|
O:HEC401
|
4.3
|
52.1
|
1.0
|
|
C3D
|
O:HEC401
|
4.3
|
44.7
|
1.0
|
|
C2D
|
O:HEC401
|
4.3
|
44.9
|
1.0
|
|
Reference:
J.P.Wieferig,
W.Kuhlbrandt.
Analysis of the Conformational Heterogeneity of the Rieske Iron-Sulfur Protein in Complex III2 By Cryo-Em Iucrj 2023.
ISSN: ESSN 2052-2525
Page generated: Fri Aug 9 16:15:07 2024
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