Iron in PDB 8ac4: Complex III2 From Yarrowia Lipolytica, Apo, C-Position

All present enzymatic activity of Complex III2 From Yarrowia Lipolytica, Apo, C-Position:
7.1.1.8;

The binding sites of Iron atom in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position (pdb code 8ac4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position, PDB code: 8ac4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:32.5 occ:1.00 FE C:HEM501 0.0 32.5 1.0 ND C:HEM501 1.9 32.6 1.0 NA C:HEM501 2.0 33.0 1.0 NE2 C:HIS82 2.0 28.6 1.0 NE2 C:HIS183 2.0 32.7 1.0 NC C:HEM501 2.1 32.8 1.0 NB C:HEM501 2.1 32.5 1.0 C4D C:HEM501 2.9 33.2 1.0 C1D C:HEM501 2.9 32.5 1.0 C1A C:HEM501 3.0 34.8 1.0 C4A C:HEM501 3.0 34.4 1.0 CE1 C:HIS183 3.0 31.3 1.0 CE1 C:HIS82 3.0 28.6 1.0 C4B C:HEM501 3.0 34.2 1.0 C4C C:HEM501 3.0 34.0 1.0 C1C C:HEM501 3.0 34.2 1.0 CD2 C:HIS82 3.1 28.1 1.0 CD2 C:HIS183 3.1 32.0 1.0 C1B C:HEM501 3.1 33.2 1.0 CHA C:HEM501 3.4 32.9 1.0 CHD C:HEM501 3.4 32.7 1.0 CHC C:HEM501 3.5 35.1 1.0 CHB C:HEM501 3.5 32.7 1.0 ND1 C:HIS82 4.1 28.8 1.0 ND1 C:HIS183 4.1 30.9 1.0 C3D C:HEM501 4.1 35.0 1.0 C3A C:HEM501 4.2 34.9 1.0 C2A C:HEM501 4.2 36.7 1.0 C2D C:HEM501 4.2 33.1 1.0 CG C:HIS82 4.2 28.8 1.0 CG C:HIS183 4.2 31.8 1.0 C2C C:HEM501 4.2 36.0 1.0 C3C C:HEM501 4.3 37.5 1.0 C3B C:HEM501 4.3 35.5 1.0 C2B C:HEM501 4.3 33.8 1.0 CA C:GLY131 4.8 42.9 1.0 NE2 C:GLN43 4.9 38.5 1.0

Iron binding site 2 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe502 b:34.3 occ:1.00 FE C:HEM502 0.0 34.3 1.0 ND C:HEM502 1.9 33.4 1.0 NA C:HEM502 2.0 33.4 1.0 NC C:HEM502 2.0 33.6 1.0 NB C:HEM502 2.1 33.0 1.0 NE2 C:HIS197 2.1 35.1 1.0 NE2 C:HIS96 2.2 30.0 1.0 C1D C:HEM502 2.9 32.1 1.0 C4C C:HEM502 2.9 34.5 1.0 C4D C:HEM502 2.9 35.1 1.0 C1A C:HEM502 3.0 33.9 1.0 C4A C:HEM502 3.0 35.7 1.0 CE1 C:HIS197 3.0 33.7 1.0 C4B C:HEM502 3.1 33.6 1.0 C1C C:HEM502 3.1 34.4 1.0 C1B C:HEM502 3.1 34.2 1.0 CD2 C:HIS96 3.1 29.9 1.0 CE1 C:HIS96 3.2 31.3 1.0 CD2 C:HIS197 3.2 36.0 1.0 CHD C:HEM502 3.4 34.3 1.0 CHA C:HEM502 3.4 34.3 1.0 CHB C:HEM502 3.5 34.2 1.0 CHC C:HEM502 3.5 34.2 1.0 C3C C:HEM502 4.1 35.6 1.0 C2A C:HEM502 4.2 34.7 1.0 C3A C:HEM502 4.2 34.9 1.0 C2D C:HEM502 4.2 32.7 1.0 C2C C:HEM502 4.2 34.2 1.0 ND1 C:HIS197 4.2 34.4 1.0 C3D C:HEM502 4.2 35.1 1.0 CG C:HIS96 4.3 31.7 1.0 ND1 C:HIS96 4.3 33.8 1.0 C2B C:HEM502 4.3 35.0 1.0 C3B C:HEM502 4.3 34.9 1.0 CG C:HIS197 4.3 35.7 1.0

Iron binding site 3 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe301 b:198.7 occ:1.00 FE1 P:FES301 0.0 198.7 1.0 S2 P:FES301 2.2 187.0 1.0 S1 P:FES301 2.2 195.7 1.0 SG P:CYS168 2.2 164.0 1.0 SG P:CYS187 2.3 157.4 1.0 CB P:CYS168 2.8 157.4 1.0 FE2 P:FES301 3.0 192.9 1.0 CB P:CYS187 3.1 163.5 1.0 OG P:SER192 3.7 161.2 1.0 CB P:HIS170 3.8 179.6 1.0 CA P:CYS168 4.3 154.9 1.0 CB P:CYS173 4.4 181.5 1.0 ND1 P:HIS170 4.5 182.3 1.0 N P:LEU171 4.5 191.0 1.0 ND1 P:HIS190 4.6 183.8 1.0 CA P:CYS187 4.6 165.0 1.0 C P:CYS168 4.6 154.0 1.0 N P:HIS170 4.6 174.6 1.0 CB P:CYS189 4.6 187.7 1.0 CG P:HIS170 4.6 184.0 1.0 CA P:HIS170 4.7 180.2 1.0 N P:CYS173 4.7 181.9 1.0 SG P:CYS173 4.8 195.0 1.0 O P:CYS168 4.9 150.6 1.0 CB P:SER192 4.9 164.8 1.0 O P:CYS173 5.0 168.9 1.0 N P:HIS190 5.0 175.5 1.0 N P:GLY172 5.0 189.9 1.0

Iron binding site 4 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe301 b:192.9 occ:1.00 FE2 P:FES301 0.0 192.9 1.0 ND1 P:HIS170 2.0 182.3 1.0 ND1 P:HIS190 2.1 183.8 1.0 S2 P:FES301 2.2 187.0 1.0 S1 P:FES301 2.2 195.7 1.0 CG P:HIS190 2.8 180.5 1.0 CG P:HIS170 3.0 184.0 1.0 CB P:HIS190 3.0 175.7 1.0 FE1 P:FES301 3.0 198.7 1.0 CE1 P:HIS170 3.0 180.6 1.0 CE1 P:HIS190 3.1 185.1 1.0 CB P:HIS170 3.3 179.6 1.0 N P:HIS190 3.8 175.5 1.0 CD2 P:HIS190 3.9 176.6 1.0 CA P:HIS190 3.9 170.9 1.0 NE2 P:HIS190 4.1 176.7 1.0 CD2 P:HIS170 4.1 189.5 1.0 NE2 P:HIS170 4.1 186.5 1.0 CB P:CYS189 4.3 187.7 1.0 N P:LEU171 4.3 191.0 1.0 SG P:CYS187 4.3 157.4 1.0 C P:CYS189 4.5 179.4 1.0 CG P:LEU171 4.5 201.5 1.0 CA P:HIS170 4.6 180.2 1.0 CB P:LEU171 4.6 196.1 1.0 SG P:CYS168 4.7 164.0 1.0 CG P:PRO204 4.7 170.1 1.0 C P:HIS190 4.7 168.3 1.0 CD1 P:LEU171 4.8 203.3 1.0 C P:HIS170 4.9 184.9 1.0 CB P:PRO204 4.9 170.8 1.0

Iron binding site 5 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:49.4 occ:1.00 FE D:HEC401 0.0 49.4 1.0 NE2 D:HIS128 2.0 43.3 1.0 NB D:HEC401 2.0 49.4 1.0 NC D:HEC401 2.1 49.6 1.0 ND D:HEC401 2.1 52.4 1.0 NA D:HEC401 2.1 50.9 1.0 SD D:MET248 2.3 55.1 1.0 CE1 D:HIS128 2.9 44.9 1.0 C4C D:HEC401 3.0 51.3 1.0 C4B D:HEC401 3.0 49.9 1.0 CD2 D:HIS128 3.0 43.9 1.0 C1B D:HEC401 3.0 49.2 1.0 C4D D:HEC401 3.0 54.1 1.0 C1D D:HEC401 3.0 52.4 1.0 C1C D:HEC401 3.0 51.8 1.0 C4A D:HEC401 3.1 51.1 1.0 C1A D:HEC401 3.1 52.3 1.0 CE D:MET248 3.3 53.7 1.0 CHB D:HEC401 3.4 50.6 1.0 CHA D:HEC401 3.4 53.9 1.0 CHD D:HEC401 3.4 50.8 1.0 CHC D:HEC401 3.4 49.3 1.0 CG D:MET248 3.5 52.5 1.0 CB D:MET248 4.0 56.2 1.0 ND1 D:HIS128 4.1 42.9 1.0 CG D:HIS128 4.1 43.6 1.0 C3B D:HEC401 4.3 51.2 1.0 C3C D:HEC401 4.3 52.5 1.0 C3D D:HEC401 4.3 56.5 1.0 C2D D:HEC401 4.3 56.1 1.0 C2B D:HEC401 4.4 51.0 1.0 C3A D:HEC401 4.4 52.1 1.0 C2C D:HEC401 4.4 52.9 1.0 C2A D:HEC401 4.4 53.3 1.0

Iron binding site 6 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe501 b:32.2 occ:1.00 FE N:HEM501 0.0 32.2 1.0 ND N:HEM501 1.9 31.8 1.0 NA N:HEM501 2.0 31.1 1.0 NE2 N:HIS82 2.0 28.4 1.0 NE2 N:HIS183 2.0 35.0 1.0 NC N:HEM501 2.0 32.8 1.0 NB N:HEM501 2.1 31.6 1.0 C4D N:HEM501 2.9 32.0 1.0 C1D N:HEM501 2.9 32.1 1.0 C1A N:HEM501 3.0 32.6 1.0 CE1 N:HIS82 3.0 29.0 1.0 C4A N:HEM501 3.0 31.6 1.0 CE1 N:HIS183 3.0 33.3 1.0 C4B N:HEM501 3.0 33.5 1.0 C1C N:HEM501 3.0 35.4 1.0 C4C N:HEM501 3.0 33.5 1.0 CD2 N:HIS82 3.1 27.5 1.0 CD2 N:HIS183 3.1 33.8 1.0 C1B N:HEM501 3.1 33.4 1.0 CHA N:HEM501 3.4 31.1 1.0 CHD N:HEM501 3.4 32.6 1.0 CHC N:HEM501 3.4 34.6 1.0 CHB N:HEM501 3.5 31.4 1.0 C3D N:HEM501 4.1 35.0 1.0 ND1 N:HIS82 4.1 29.2 1.0 C2D N:HEM501 4.1 33.3 1.0 ND1 N:HIS183 4.1 32.4 1.0 C3A N:HEM501 4.2 32.0 1.0 C2A N:HEM501 4.2 34.4 1.0 CG N:HIS82 4.2 29.7 1.0 CG N:HIS183 4.2 33.0 1.0 C2C N:HEM501 4.2 36.2 1.0 C3C N:HEM501 4.3 36.6 1.0 C3B N:HEM501 4.3 34.7 1.0 C2B N:HEM501 4.3 34.6 1.0 CA N:GLY131 4.8 40.9 1.0 NE2 N:GLN43 4.9 42.2 1.0

Iron binding site 7 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe502 b:32.5 occ:1.00 FE N:HEM502 0.0 32.5 1.0 ND N:HEM502 1.9 33.6 1.0 NA N:HEM502 2.0 32.7 1.0 NC N:HEM502 2.0 32.2 1.0 NE2 N:HIS96 2.0 35.0 1.0 NB N:HEM502 2.1 32.1 1.0 NE2 N:HIS197 2.1 33.9 1.0 C4C N:HEM502 2.9 33.8 1.0 C1D N:HEM502 2.9 32.2 1.0 C4D N:HEM502 2.9 33.6 1.0 C1A N:HEM502 2.9 33.3 1.0 CE1 N:HIS96 2.9 32.4 1.0 C4A N:HEM502 3.0 35.7 1.0 CE1 N:HIS197 3.0 33.0 1.0 C4B N:HEM502 3.0 32.4 1.0 C1B N:HEM502 3.0 32.1 1.0 C1C N:HEM502 3.0 33.5 1.0 CD2 N:HIS96 3.1 34.2 1.0 CD2 N:HIS197 3.2 34.6 1.0 CHD N:HEM502 3.4 32.1 1.0 CHA N:HEM502 3.4 33.3 1.0 CHB N:HEM502 3.4 32.8 1.0 CHC N:HEM502 3.5 33.6 1.0 ND1 N:HIS96 4.1 33.2 1.0 C3C N:HEM502 4.1 34.2 1.0 C2A N:HEM502 4.1 34.3 1.0 C2C N:HEM502 4.2 33.7 1.0 C3A N:HEM502 4.2 34.7 1.0 ND1 N:HIS197 4.2 34.5 1.0 C2D N:HEM502 4.2 33.2 1.0 C3D N:HEM502 4.2 35.0 1.0 CG N:HIS96 4.2 32.9 1.0 C3B N:HEM502 4.3 32.6 1.0 C2B N:HEM502 4.3 31.9 1.0 CG N:HIS197 4.3 35.7 1.0

Iron binding site 8 out of 8 in the Complex III2 From Yarrowia Lipolytica, Apo, C-Position


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex III2 From Yarrowia Lipolytica, Apo, C-Position within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe401 b:48.5 occ:1.00 FE O:HEC401 0.0 48.5 1.0 NE2 O:HIS128 2.0 47.7 1.0 NB O:HEC401 2.0 48.8 1.0 NC O:HEC401 2.0 50.0 1.0 ND O:HEC401 2.1 51.2 1.0 NA O:HEC401 2.1 49.3 1.0 SD O:MET248 2.3 55.2 1.0 CE1 O:HIS128 2.9 47.3 1.0 C4B O:HEC401 3.0 50.1 1.0 C4D O:HEC401 3.0 52.2 1.0 C4C O:HEC401 3.0 52.7 1.0 C1C O:HEC401 3.0 51.6 1.0 CD2 O:HIS128 3.0 47.5 1.0 C1B O:HEC401 3.0 48.7 1.0 C1A O:HEC401 3.1 50.8 1.0 C1D O:HEC401 3.1 52.7 1.0 C4A O:HEC401 3.1 47.6 1.0 CE O:MET248 3.3 53.3 1.0 CHA O:HEC401 3.4 50.9 1.0 CHC O:HEC401 3.4 49.0 1.0 CHD O:HEC401 3.4 51.1 1.0 CHB O:HEC401 3.4 47.6 1.0 CG O:MET248 3.5 57.8 1.0 ND1 O:HIS128 4.1 46.0 1.0 CB O:MET248 4.1 57.0 1.0 CG O:HIS128 4.1 47.2 1.0 C3B O:HEC401 4.3 51.4 1.0 C3C O:HEC401 4.3 54.6 1.0 C3D O:HEC401 4.3 55.9 1.0 C2C O:HEC401 4.3 52.4 1.0 C2D O:HEC401 4.3 55.0 1.0 C2B O:HEC401 4.4 49.8 1.0 C2A O:HEC401 4.4 50.3 1.0 C3A O:HEC401 4.4 49.1 1.0

J.P.Wieferig, W.Kuhlbrandt. Analysis of the Conformational Heterogeneity of the Rieske Iron-Sulfur Protein in Complex III2 By Cryo-Em Iucrj 2023.
ISSN: ESSN 2052-2525