Iron in PDB 8aio: Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Enzymatic activity of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
All present enzymatic activity of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi):
1.12.7.2;
Protein crystallography data
The structure of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi), PDB code: 8aio
was solved by
J.Duan,
E.Hofmann,
T.Happe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.03 /
1.52
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.6,
72.16,
103.21,
90,
101.94,
90
|
R / Rfree (%)
|
16.7 /
19.2
|
Other elements in 8aio:
The structure of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 1 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:19.4
occ:0.82
|
FE1
|
A:MHX601
|
0.0
|
19.4
|
0.8
|
C3
|
A:MHX601
|
1.7
|
12.7
|
0.8
|
C4
|
A:MHX601
|
1.8
|
21.1
|
0.8
|
C5
|
A:MHX601
|
1.9
|
20.3
|
0.8
|
S2
|
A:MHX601
|
2.3
|
19.4
|
0.8
|
S1
|
A:MHX601
|
2.3
|
19.9
|
0.8
|
SG
|
A:CYS503
|
2.5
|
18.0
|
1.0
|
FE2
|
A:MHX601
|
2.6
|
20.6
|
0.8
|
O3
|
A:MHX601
|
2.9
|
19.0
|
0.8
|
O5
|
A:MHX601
|
3.0
|
19.0
|
0.8
|
N4
|
A:MHX601
|
3.1
|
12.3
|
0.8
|
HB3
|
A:CYS503
|
3.4
|
19.7
|
1.0
|
CB
|
A:CYS503
|
3.4
|
16.4
|
1.0
|
C1
|
A:MHX601
|
3.4
|
17.8
|
0.8
|
C2
|
A:MHX601
|
3.5
|
20.5
|
0.8
|
HB2
|
A:CYS503
|
3.5
|
19.7
|
1.0
|
C7
|
A:MHX601
|
3.8
|
21.3
|
0.8
|
N1
|
A:MHX601
|
3.8
|
20.5
|
0.8
|
C6
|
A:MHX601
|
3.9
|
21.2
|
0.8
|
HE1
|
A:MET353
|
3.9
|
22.0
|
0.1
|
HE3
|
A:LYS358
|
4.0
|
20.7
|
1.0
|
C
|
A:MHX601
|
4.0
|
21.0
|
0.6
|
HD2
|
A:PRO231
|
4.1
|
26.6
|
1.0
|
FE4
|
A:SF4602
|
4.1
|
18.9
|
1.0
|
HB1
|
A:ALA230
|
4.2
|
21.6
|
1.0
|
HA2
|
A:GLY418
|
4.3
|
22.9
|
1.0
|
S2
|
A:SF4602
|
4.3
|
19.1
|
1.0
|
HG3
|
A:PRO354
|
4.4
|
21.4
|
1.0
|
HG2
|
A:PRO354
|
4.4
|
21.4
|
1.0
|
HD2
|
A:PRO354
|
4.4
|
21.2
|
1.0
|
HE2
|
A:MET353
|
4.5
|
22.0
|
0.1
|
CE
|
A:MET353
|
4.6
|
18.4
|
0.1
|
HG2
|
A:PRO231
|
4.6
|
25.6
|
1.0
|
HE3
|
A:MET353
|
4.6
|
22.0
|
0.1
|
O7
|
A:MHX601
|
4.7
|
21.3
|
0.8
|
CG
|
A:PRO354
|
4.7
|
17.9
|
1.0
|
N6
|
A:MHX601
|
4.7
|
15.9
|
0.8
|
HE2
|
A:LYS358
|
4.8
|
20.7
|
1.0
|
CE
|
A:LYS358
|
4.8
|
17.2
|
1.0
|
HB3
|
A:PHE417
|
4.9
|
22.8
|
1.0
|
CA
|
A:CYS503
|
4.9
|
16.5
|
1.0
|
CD
|
A:PRO354
|
4.9
|
17.7
|
1.0
|
CD
|
A:PRO231
|
5.0
|
22.2
|
1.0
|
HB2
|
A:ALA230
|
5.0
|
21.6
|
1.0
|
|
Iron binding site 2 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 2 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:20.6
occ:0.82
|
FE2
|
A:MHX601
|
0.0
|
20.6
|
0.8
|
C7
|
A:MHX601
|
1.8
|
21.3
|
0.8
|
C
|
A:MHX601
|
1.8
|
21.0
|
0.6
|
C6
|
A:MHX601
|
1.9
|
21.2
|
0.8
|
C5
|
A:MHX601
|
2.0
|
20.3
|
0.8
|
S2
|
A:MHX601
|
2.3
|
19.4
|
0.8
|
S1
|
A:MHX601
|
2.3
|
19.9
|
0.8
|
FE1
|
A:MHX601
|
2.6
|
19.4
|
0.8
|
O5
|
A:MHX601
|
2.9
|
19.0
|
0.8
|
O7
|
A:MHX601
|
2.9
|
21.3
|
0.8
|
O
|
A:MHX601
|
2.9
|
18.6
|
0.6
|
N6
|
A:MHX601
|
3.0
|
15.9
|
0.8
|
HG2
|
A:PRO324
|
3.2
|
28.2
|
1.0
|
N1
|
A:MHX601
|
3.4
|
20.5
|
0.8
|
HD2
|
A:PHE417
|
3.4
|
26.5
|
1.0
|
C1
|
A:MHX601
|
3.5
|
17.8
|
0.8
|
C2
|
A:MHX601
|
3.5
|
20.5
|
0.8
|
HD2
|
A:PRO324
|
3.6
|
25.6
|
1.0
|
HB2
|
A:PRO324
|
3.7
|
23.3
|
1.0
|
C4
|
A:MHX601
|
3.8
|
21.1
|
0.8
|
C3
|
A:MHX601
|
3.8
|
12.7
|
0.8
|
CG
|
A:PRO324
|
3.9
|
23.5
|
1.0
|
HE3
|
A:LYS358
|
4.0
|
20.7
|
1.0
|
HB3
|
A:PHE417
|
4.1
|
22.8
|
1.0
|
HD2
|
A:PRO231
|
4.1
|
26.6
|
1.0
|
HZ2
|
A:LYS358
|
4.2
|
20.2
|
1.0
|
HB2
|
A:CYS299
|
4.2
|
26.1
|
1.0
|
CD
|
A:PRO324
|
4.2
|
21.4
|
1.0
|
CB
|
A:PRO324
|
4.3
|
19.4
|
1.0
|
CD2
|
A:PHE417
|
4.3
|
22.1
|
1.0
|
HG2
|
A:PRO231
|
4.4
|
25.6
|
1.0
|
HE2
|
A:MET353
|
4.5
|
22.0
|
0.1
|
HE1
|
A:MET353
|
4.6
|
22.0
|
0.1
|
SG
|
A:CYS503
|
4.7
|
18.0
|
1.0
|
HG3
|
A:PRO324
|
4.7
|
28.2
|
1.0
|
HG22
|
A:ILE268
|
4.7
|
26.3
|
1.0
|
NZ
|
A:LYS358
|
4.7
|
16.8
|
1.0
|
HZ3
|
A:LYS358
|
4.8
|
20.2
|
1.0
|
CE
|
A:LYS358
|
4.8
|
17.2
|
1.0
|
N4
|
A:MHX601
|
4.8
|
12.3
|
0.8
|
O3
|
A:MHX601
|
4.8
|
19.0
|
0.8
|
HB3
|
A:PRO324
|
4.8
|
23.3
|
1.0
|
HG21
|
A:ILE268
|
4.9
|
26.3
|
1.0
|
HD3
|
A:PRO324
|
4.9
|
25.6
|
1.0
|
CD
|
A:PRO231
|
4.9
|
22.2
|
1.0
|
O
|
A:CYS299
|
4.9
|
21.4
|
1.0
|
H
|
A:GLN325
|
4.9
|
21.3
|
1.0
|
CB
|
A:PHE417
|
4.9
|
19.0
|
1.0
|
HD3
|
A:PRO231
|
5.0
|
26.6
|
1.0
|
CE
|
A:MET353
|
5.0
|
18.4
|
0.1
|
HE2
|
A:PHE417
|
5.0
|
24.4
|
1.0
|
HB2
|
A:SER323
|
5.0
|
23.5
|
1.0
|
|
Iron binding site 3 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 3 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:18.0
occ:0.94
|
FE1
|
A:SF4602
|
0.0
|
18.0
|
0.9
|
SG
|
A:CYS355
|
2.3
|
20.4
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.1
|
1.0
|
S4
|
A:SF4602
|
2.3
|
18.1
|
1.0
|
S3
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
18.2
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
17.9
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
18.9
|
1.0
|
HB2
|
A:CYS355
|
2.9
|
25.7
|
1.0
|
CB
|
A:CYS355
|
3.2
|
21.4
|
1.0
|
HD2
|
A:PRO301
|
3.7
|
19.7
|
1.0
|
O
|
A:HOH756
|
3.8
|
18.7
|
1.0
|
HB3
|
A:CYS355
|
3.8
|
25.7
|
1.0
|
HB3
|
A:SER357
|
3.8
|
23.5
|
1.0
|
S1
|
A:SF4602
|
3.8
|
18.4
|
1.0
|
O3
|
A:MHX601
|
3.9
|
19.0
|
0.8
|
HG2
|
A:LYS358
|
4.0
|
19.8
|
1.0
|
HG2
|
A:PRO301
|
4.1
|
21.7
|
1.0
|
HA
|
A:CYS355
|
4.2
|
24.1
|
1.0
|
HE2
|
A:LYS358
|
4.3
|
20.7
|
1.0
|
CA
|
A:CYS355
|
4.3
|
20.1
|
1.0
|
H
|
A:SER357
|
4.4
|
22.8
|
1.0
|
H
|
A:GLY302
|
4.4
|
20.1
|
1.0
|
HB2
|
A:SER357
|
4.5
|
23.5
|
1.0
|
CD
|
A:PRO301
|
4.6
|
16.4
|
1.0
|
CB
|
A:SER357
|
4.6
|
19.6
|
1.0
|
C3
|
A:MHX601
|
4.6
|
12.7
|
0.8
|
H
|
A:LYS358
|
4.7
|
23.2
|
1.0
|
SG
|
A:CYS300
|
4.7
|
17.9
|
1.0
|
SG
|
A:CYS503
|
4.7
|
18.0
|
1.0
|
SG
|
A:CYS499
|
4.7
|
18.3
|
1.0
|
CG
|
A:PRO301
|
4.8
|
18.1
|
1.0
|
HA
|
A:CYS300
|
4.8
|
22.3
|
1.0
|
HA3
|
A:GLY506
|
4.8
|
22.2
|
1.0
|
CG
|
A:LYS358
|
4.9
|
16.5
|
1.0
|
HG3
|
A:LYS358
|
4.9
|
19.8
|
1.0
|
HA
|
A:CYS503
|
4.9
|
19.8
|
1.0
|
HA
|
A:CYS193
|
5.0
|
21.3
|
1.0
|
|
Iron binding site 4 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 4 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:17.9
occ:1.00
|
FE2
|
A:SF4602
|
0.0
|
17.9
|
1.0
|
S1
|
A:SF4602
|
2.3
|
18.4
|
1.0
|
S3
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
SG
|
A:CYS499
|
2.3
|
18.3
|
1.0
|
S4
|
A:SF4602
|
2.3
|
18.1
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
18.0
|
0.9
|
FE3
|
A:SF4602
|
2.7
|
18.2
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
18.9
|
1.0
|
HB2
|
A:CYS499
|
2.9
|
22.5
|
1.0
|
CB
|
A:CYS499
|
3.2
|
18.8
|
1.0
|
H
|
A:CYS499
|
3.4
|
21.0
|
1.0
|
HA2
|
A:GLY506
|
3.5
|
22.2
|
1.0
|
HB3
|
A:ALA498
|
3.8
|
23.5
|
1.0
|
N
|
A:CYS499
|
3.8
|
17.5
|
1.0
|
HA
|
A:CYS503
|
3.8
|
19.8
|
1.0
|
S2
|
A:SF4602
|
3.9
|
19.1
|
1.0
|
HB3
|
A:CYS499
|
3.9
|
22.5
|
1.0
|
HA3
|
A:GLY506
|
4.0
|
22.2
|
1.0
|
CA
|
A:CYS499
|
4.1
|
16.0
|
1.0
|
O
|
A:HOH756
|
4.1
|
18.7
|
1.0
|
CA
|
A:GLY506
|
4.2
|
18.5
|
1.0
|
H
|
A:ALA498
|
4.3
|
21.8
|
1.0
|
H
|
A:GLY507
|
4.4
|
21.4
|
1.0
|
HB2
|
A:CYS193
|
4.4
|
24.3
|
1.0
|
SG
|
A:CYS355
|
4.6
|
20.4
|
1.0
|
HA
|
A:CYS499
|
4.7
|
19.2
|
1.0
|
HB2
|
A:CYS355
|
4.7
|
25.7
|
1.0
|
C
|
A:ALA498
|
4.7
|
18.1
|
1.0
|
SG
|
A:CYS300
|
4.7
|
17.9
|
1.0
|
CB
|
A:ALA498
|
4.7
|
19.6
|
1.0
|
HE21
|
A:GLN195
|
4.7
|
28.1
|
1.0
|
CA
|
A:CYS503
|
4.8
|
16.5
|
1.0
|
N
|
A:ALA498
|
4.8
|
18.2
|
1.0
|
SG
|
A:CYS503
|
4.9
|
18.0
|
1.0
|
HA
|
A:CYS193
|
5.0
|
21.3
|
1.0
|
CA
|
A:ALA498
|
5.0
|
18.9
|
1.0
|
|
Iron binding site 5 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 5 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:18.2
occ:1.00
|
FE3
|
A:SF4602
|
0.0
|
18.2
|
1.0
|
S4
|
A:SF4602
|
2.2
|
18.1
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.1
|
1.0
|
SG
|
A:CYS300
|
2.3
|
17.9
|
1.0
|
S1
|
A:SF4602
|
2.3
|
18.4
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
18.0
|
0.9
|
FE2
|
A:SF4602
|
2.7
|
17.9
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
18.9
|
1.0
|
H
|
A:ALA498
|
3.2
|
21.8
|
1.0
|
HB2
|
A:CYS300
|
3.3
|
21.4
|
1.0
|
CB
|
A:CYS300
|
3.3
|
17.9
|
1.0
|
HB3
|
A:ALA498
|
3.5
|
23.5
|
1.0
|
HA
|
A:CYS300
|
3.5
|
22.3
|
1.0
|
H
|
A:GLY302
|
3.6
|
20.1
|
1.0
|
HD2
|
A:PRO301
|
3.6
|
19.7
|
1.0
|
S3
|
A:SF4602
|
3.8
|
19.3
|
1.0
|
CA
|
A:CYS300
|
3.9
|
18.6
|
1.0
|
N
|
A:ALA498
|
4.1
|
18.2
|
1.0
|
H
|
A:CYS499
|
4.1
|
21.0
|
1.0
|
HB3
|
A:CYS300
|
4.2
|
21.4
|
1.0
|
CB
|
A:ALA498
|
4.3
|
19.6
|
1.0
|
HA3
|
A:GLY302
|
4.4
|
19.4
|
1.0
|
C
|
A:CYS300
|
4.4
|
19.3
|
1.0
|
HA
|
A:MET497
|
4.4
|
19.6
|
1.0
|
N
|
A:GLY302
|
4.4
|
16.8
|
1.0
|
HB2
|
A:ALA498
|
4.4
|
23.5
|
1.0
|
CD
|
A:PRO301
|
4.4
|
16.4
|
1.0
|
H
|
A:TRP303
|
4.5
|
21.5
|
1.0
|
N
|
A:PRO301
|
4.5
|
17.9
|
1.0
|
HB3
|
A:MET497
|
4.5
|
24.2
|
1.0
|
C2
|
A:MHX601
|
4.7
|
20.5
|
0.8
|
SG
|
A:CYS499
|
4.7
|
18.3
|
1.0
|
CA
|
A:ALA498
|
4.7
|
18.9
|
1.0
|
SG
|
A:CYS503
|
4.7
|
18.0
|
1.0
|
N
|
A:CYS499
|
4.8
|
17.5
|
1.0
|
HG2
|
A:PRO301
|
4.8
|
21.7
|
1.0
|
SG
|
A:CYS355
|
4.8
|
20.4
|
1.0
|
SD
|
A:MET497
|
4.8
|
19.1
|
1.0
|
CA
|
A:GLY302
|
4.9
|
16.2
|
1.0
|
HB2
|
A:CYS499
|
4.9
|
22.5
|
1.0
|
|
Iron binding site 6 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 6 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:18.9
occ:1.00
|
FE4
|
A:SF4602
|
0.0
|
18.9
|
1.0
|
S3
|
A:SF4602
|
2.2
|
19.3
|
1.0
|
S1
|
A:SF4602
|
2.3
|
18.4
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.1
|
1.0
|
SG
|
A:CYS503
|
2.3
|
18.0
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
18.0
|
0.9
|
FE3
|
A:SF4602
|
2.7
|
18.2
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
17.9
|
1.0
|
HA
|
A:CYS503
|
2.8
|
19.8
|
1.0
|
CB
|
A:CYS503
|
3.3
|
16.4
|
1.0
|
CA
|
A:CYS503
|
3.4
|
16.5
|
1.0
|
HB3
|
A:CYS503
|
3.5
|
19.7
|
1.0
|
C3
|
A:MHX601
|
3.8
|
12.7
|
0.8
|
O3
|
A:MHX601
|
3.9
|
19.0
|
0.8
|
S4
|
A:SF4602
|
3.9
|
18.1
|
1.0
|
N
|
A:CYS503
|
3.9
|
16.6
|
1.0
|
HB2
|
A:CYS355
|
4.1
|
25.7
|
1.0
|
H
|
A:CYS503
|
4.1
|
20.0
|
1.0
|
HB2
|
A:CYS503
|
4.1
|
19.7
|
1.0
|
FE1
|
A:MHX601
|
4.1
|
19.4
|
0.8
|
C2
|
A:MHX601
|
4.2
|
20.5
|
0.8
|
S2
|
A:MHX601
|
4.3
|
19.4
|
0.8
|
HB2
|
A:CYS499
|
4.4
|
22.5
|
1.0
|
HG2
|
A:PRO354
|
4.4
|
21.4
|
1.0
|
C
|
A:GLY502
|
4.7
|
19.5
|
1.0
|
SG
|
A:CYS355
|
4.7
|
20.4
|
1.0
|
HB2
|
A:CYS300
|
4.7
|
21.4
|
1.0
|
SD
|
A:MET497
|
4.7
|
19.1
|
1.0
|
HA3
|
A:GLY506
|
4.7
|
22.2
|
1.0
|
C
|
A:CYS503
|
4.8
|
16.6
|
1.0
|
SG
|
A:CYS300
|
4.8
|
17.9
|
1.0
|
CB
|
A:CYS355
|
4.8
|
21.4
|
1.0
|
HB3
|
A:MET497
|
4.8
|
24.2
|
1.0
|
HA
|
A:CYS300
|
4.9
|
22.3
|
1.0
|
SG
|
A:CYS499
|
4.9
|
18.3
|
1.0
|
HD2
|
A:PRO301
|
4.9
|
19.7
|
1.0
|
H
|
A:CYS499
|
4.9
|
21.0
|
1.0
|
|
Iron binding site 7 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 7 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:18.9
occ:1.00
|
FE1
|
A:SF4603
|
0.0
|
18.9
|
1.0
|
S4
|
A:SF4603
|
2.3
|
19.4
|
1.0
|
SG
|
A:CYS193
|
2.3
|
19.4
|
1.0
|
S3
|
A:SF4603
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4603
|
2.3
|
18.2
|
1.0
|
FE2
|
A:SF4603
|
2.8
|
17.9
|
1.0
|
FE3
|
A:SF4603
|
2.8
|
19.4
|
1.0
|
FE4
|
A:SF4603
|
2.8
|
18.9
|
1.0
|
H
|
A:CYS193
|
3.0
|
22.2
|
1.0
|
HG21
|
A:THR161
|
3.2
|
22.9
|
1.0
|
H
|
A:GLY194
|
3.3
|
20.2
|
1.0
|
H
|
A:GLN195
|
3.5
|
21.2
|
1.0
|
N
|
A:CYS193
|
3.6
|
18.5
|
1.0
|
CB
|
A:CYS193
|
3.7
|
20.2
|
1.0
|
N
|
A:GLY194
|
3.8
|
16.8
|
1.0
|
HB2
|
A:LEU191
|
3.9
|
21.7
|
1.0
|
HB3
|
A:CYS193
|
3.9
|
24.3
|
1.0
|
S1
|
A:SF4603
|
4.0
|
19.5
|
1.0
|
H
|
A:LEU191
|
4.0
|
22.0
|
1.0
|
CA
|
A:CYS193
|
4.0
|
17.7
|
1.0
|
HB2
|
A:GLN195
|
4.1
|
21.7
|
1.0
|
CG2
|
A:THR161
|
4.1
|
19.1
|
1.0
|
H
|
A:LEU192
|
4.1
|
23.5
|
1.0
|
HG23
|
A:THR161
|
4.2
|
22.9
|
1.0
|
H
|
A:CYS196
|
4.2
|
23.2
|
1.0
|
C
|
A:CYS193
|
4.2
|
17.9
|
1.0
|
N
|
A:GLN195
|
4.3
|
17.7
|
1.0
|
HB2
|
A:CYS193
|
4.4
|
24.3
|
1.0
|
N
|
A:LEU192
|
4.4
|
19.6
|
1.0
|
HG22
|
A:THR161
|
4.5
|
22.9
|
1.0
|
C
|
A:LEU192
|
4.7
|
20.4
|
1.0
|
N
|
A:LEU191
|
4.7
|
18.3
|
1.0
|
SG
|
A:CYS190
|
4.7
|
19.1
|
1.0
|
CB
|
A:LEU191
|
4.7
|
18.1
|
1.0
|
CA
|
A:GLY194
|
4.7
|
19.9
|
1.0
|
SG
|
A:CYS196
|
4.7
|
18.9
|
1.0
|
HG
|
A:LEU191
|
4.7
|
21.2
|
1.0
|
HA2
|
A:GLY194
|
4.8
|
23.8
|
1.0
|
HA
|
A:LEU192
|
4.8
|
22.1
|
1.0
|
HD11
|
A:LEU191
|
4.8
|
25.4
|
1.0
|
SG
|
A:CYS157
|
4.8
|
17.9
|
1.0
|
HA
|
A:CYS157
|
4.8
|
16.6
|
1.0
|
HG2
|
A:GLN195
|
4.9
|
25.3
|
1.0
|
CB
|
A:GLN195
|
4.9
|
18.1
|
1.0
|
CA
|
A:LEU192
|
4.9
|
18.4
|
1.0
|
C
|
A:LEU191
|
5.0
|
20.4
|
1.0
|
C
|
A:GLY194
|
5.0
|
15.8
|
1.0
|
HA
|
A:CYS193
|
5.0
|
21.3
|
1.0
|
N
|
A:CYS196
|
5.0
|
19.4
|
1.0
|
|
Iron binding site 8 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 8 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:17.9
occ:1.00
|
FE2
|
A:SF4603
|
0.0
|
17.9
|
1.0
|
S3
|
A:SF4603
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4603
|
2.3
|
19.5
|
1.0
|
SG
|
A:CYS157
|
2.3
|
17.9
|
1.0
|
S4
|
A:SF4603
|
2.3
|
19.4
|
1.0
|
FE4
|
A:SF4603
|
2.7
|
18.9
|
1.0
|
FE3
|
A:SF4603
|
2.7
|
19.4
|
1.0
|
FE1
|
A:SF4603
|
2.8
|
18.9
|
1.0
|
HB2
|
A:CYS157
|
3.0
|
17.6
|
1.0
|
CB
|
A:CYS157
|
3.2
|
14.7
|
1.0
|
HB1
|
A:ALA165
|
3.3
|
23.2
|
1.0
|
HA
|
A:CYS157
|
3.6
|
16.6
|
1.0
|
HG21
|
A:THR161
|
3.8
|
22.9
|
1.0
|
H
|
A:MET166
|
3.9
|
21.6
|
1.0
|
HG1
|
A:THR163
|
3.9
|
25.4
|
1.0
|
S2
|
A:SF4603
|
3.9
|
18.2
|
1.0
|
CA
|
A:CYS157
|
4.0
|
13.9
|
1.0
|
HB3
|
A:CYS157
|
4.0
|
17.6
|
1.0
|
HB2
|
A:MET166
|
4.1
|
27.4
|
1.0
|
H
|
A:ALA165
|
4.1
|
25.3
|
1.0
|
OG1
|
A:THR163
|
4.1
|
21.2
|
1.0
|
HG1
|
A:THR161
|
4.2
|
24.5
|
1.0
|
CB
|
A:ALA165
|
4.3
|
19.3
|
1.0
|
OG1
|
A:THR161
|
4.3
|
20.4
|
1.0
|
HG23
|
A:THR161
|
4.3
|
22.9
|
1.0
|
HB3
|
A:CYS196
|
4.4
|
23.9
|
1.0
|
N
|
A:MET166
|
4.4
|
18.0
|
1.0
|
CG2
|
A:THR161
|
4.5
|
19.1
|
1.0
|
HB3
|
A:MET166
|
4.5
|
27.4
|
1.0
|
HB3
|
A:ALA165
|
4.7
|
23.2
|
1.0
|
H
|
A:LEU191
|
4.7
|
22.0
|
1.0
|
N
|
A:ALA165
|
4.7
|
21.1
|
1.0
|
CB
|
A:MET166
|
4.7
|
22.9
|
1.0
|
HA
|
A:CYS190
|
4.7
|
25.0
|
1.0
|
HB2
|
A:ALA165
|
4.8
|
23.2
|
1.0
|
SG
|
A:CYS193
|
4.8
|
19.4
|
1.0
|
C
|
A:CYS157
|
4.9
|
17.7
|
1.0
|
CA
|
A:ALA165
|
4.9
|
21.8
|
1.0
|
H
|
A:CYS196
|
4.9
|
23.2
|
1.0
|
SG
|
A:CYS196
|
4.9
|
18.9
|
1.0
|
C
|
A:ALA165
|
4.9
|
21.4
|
1.0
|
SG
|
A:CYS190
|
4.9
|
19.1
|
1.0
|
O
|
A:CYS157
|
5.0
|
19.6
|
1.0
|
|
Iron binding site 9 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 9 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:19.4
occ:1.00
|
FE3
|
A:SF4603
|
0.0
|
19.4
|
1.0
|
S2
|
A:SF4603
|
2.3
|
18.2
|
1.0
|
S4
|
A:SF4603
|
2.3
|
19.4
|
1.0
|
S1
|
A:SF4603
|
2.3
|
19.5
|
1.0
|
SG
|
A:CYS196
|
2.3
|
18.9
|
1.0
|
FE2
|
A:SF4603
|
2.7
|
17.9
|
1.0
|
FE4
|
A:SF4603
|
2.8
|
18.9
|
1.0
|
FE1
|
A:SF4603
|
2.8
|
18.9
|
1.0
|
HB3
|
A:CYS196
|
3.0
|
23.9
|
1.0
|
H
|
A:CYS196
|
3.1
|
23.2
|
1.0
|
CB
|
A:CYS196
|
3.3
|
19.9
|
1.0
|
HE2
|
A:MET166
|
3.7
|
26.0
|
1.0
|
H
|
A:GLY194
|
3.8
|
20.2
|
1.0
|
N
|
A:CYS196
|
3.9
|
19.4
|
1.0
|
S3
|
A:SF4603
|
3.9
|
18.5
|
1.0
|
HD11
|
A:LEU140
|
4.0
|
38.8
|
1.0
|
HB2
|
A:CYS196
|
4.0
|
23.9
|
1.0
|
HB2
|
A:MET166
|
4.1
|
27.4
|
1.0
|
HD13
|
A:LEU140
|
4.1
|
38.8
|
1.0
|
HB2
|
A:CYS157
|
4.1
|
17.6
|
1.0
|
HA2
|
A:GLY194
|
4.2
|
23.8
|
1.0
|
CA
|
A:CYS196
|
4.2
|
18.9
|
1.0
|
H
|
A:GLN195
|
4.3
|
21.2
|
1.0
|
N
|
A:GLY194
|
4.4
|
16.8
|
1.0
|
CD1
|
A:LEU140
|
4.5
|
32.3
|
1.0
|
N
|
A:GLN195
|
4.6
|
17.7
|
1.0
|
CE
|
A:MET166
|
4.6
|
21.6
|
1.0
|
HE3
|
A:MET166
|
4.6
|
26.0
|
1.0
|
CA
|
A:GLY194
|
4.6
|
19.9
|
1.0
|
SG
|
A:CYS190
|
4.7
|
19.1
|
1.0
|
SG
|
A:CYS193
|
4.7
|
19.4
|
1.0
|
SG
|
A:CYS157
|
4.7
|
17.9
|
1.0
|
HD21
|
A:LEU140
|
4.8
|
36.4
|
1.0
|
HA
|
A:CYS196
|
4.8
|
22.7
|
1.0
|
C
|
A:GLY194
|
4.8
|
15.8
|
1.0
|
CB
|
A:CYS157
|
4.9
|
14.7
|
1.0
|
H
|
A:ILE197
|
4.9
|
21.8
|
1.0
|
H
|
A:CYS193
|
4.9
|
22.2
|
1.0
|
HB2
|
A:GLN195
|
4.9
|
21.7
|
1.0
|
HD22
|
A:LEU140
|
4.9
|
36.4
|
1.0
|
HE1
|
A:MET166
|
5.0
|
26.0
|
1.0
|
CB
|
A:MET166
|
5.0
|
22.9
|
1.0
|
|
Iron binding site 10 out
of 40 in 8aio
Go back to
Iron Binding Sites List in 8aio
Iron binding site 10 out
of 40 in the Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Co-Bound [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:18.9
occ:1.00
|
FE4
|
A:SF4603
|
0.0
|
18.9
|
1.0
|
S1
|
A:SF4603
|
2.3
|
19.5
|
1.0
|
S3
|
A:SF4603
|
2.3
|
18.5
|
1.0
|
SG
|
A:CYS190
|
2.3
|
19.1
|
1.0
|
S2
|
A:SF4603
|
2.3
|
18.2
|
1.0
|
FE2
|
A:SF4603
|
2.7
|
17.9
|
1.0
|
FE3
|
A:SF4603
|
2.8
|
19.4
|
1.0
|
FE1
|
A:SF4603
|
2.8
|
18.9
|
1.0
|
H
|
A:LEU192
|
3.2
|
23.5
|
1.0
|
H
|
A:LEU191
|
3.3
|
22.0
|
1.0
|
HA
|
A:CYS190
|
3.4
|
25.0
|
1.0
|
HB1
|
A:ALA165
|
3.4
|
23.2
|
1.0
|
CB
|
A:CYS190
|
3.4
|
19.7
|
1.0
|
HB2
|
A:CYS190
|
3.5
|
23.6
|
1.0
|
HD11
|
A:LEU140
|
3.7
|
38.8
|
1.0
|
CA
|
A:CYS190
|
3.8
|
20.8
|
1.0
|
N
|
A:LEU191
|
3.8
|
18.3
|
1.0
|
S4
|
A:SF4603
|
3.9
|
19.4
|
1.0
|
N
|
A:LEU192
|
3.9
|
19.6
|
1.0
|
HD1
|
A:PHE185
|
4.0
|
23.8
|
1.0
|
H
|
A:CYS193
|
4.1
|
22.2
|
1.0
|
HA
|
A:LEU192
|
4.1
|
22.1
|
1.0
|
HB2
|
A:ALA165
|
4.1
|
23.2
|
1.0
|
CB
|
A:ALA165
|
4.2
|
19.3
|
1.0
|
C
|
A:CYS190
|
4.2
|
21.9
|
1.0
|
HB3
|
A:CYS190
|
4.2
|
23.6
|
1.0
|
CD1
|
A:LEU140
|
4.5
|
32.3
|
1.0
|
H
|
A:GLY194
|
4.6
|
20.2
|
1.0
|
CA
|
A:LEU192
|
4.6
|
18.4
|
1.0
|
HB3
|
A:ALA165
|
4.6
|
23.2
|
1.0
|
HD13
|
A:LEU140
|
4.6
|
38.8
|
1.0
|
HD23
|
A:LEU192
|
4.6
|
24.2
|
1.0
|
CD1
|
A:PHE185
|
4.7
|
19.8
|
1.0
|
HD12
|
A:LEU140
|
4.8
|
38.8
|
1.0
|
N
|
A:CYS193
|
4.8
|
18.5
|
1.0
|
HB2
|
A:LEU191
|
4.8
|
21.7
|
1.0
|
SG
|
A:CYS157
|
4.8
|
17.9
|
1.0
|
CA
|
A:LEU191
|
4.8
|
20.5
|
1.0
|
C
|
A:LEU191
|
4.8
|
20.4
|
1.0
|
HE1
|
A:PHE185
|
4.8
|
30.0
|
1.0
|
SG
|
A:CYS196
|
4.9
|
18.9
|
1.0
|
HB3
|
A:PHE185
|
5.0
|
26.2
|
1.0
|
SG
|
A:CYS193
|
5.0
|
19.4
|
1.0
|
|
Reference:
J.Duan,
A.Hemschemeier,
D.J.Burr,
S.T.Stripp,
E.Hofmann,
T.Happe.
Cyanide Binding to [Fefe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway. Angew.Chem.Int.Ed.Engl. 2022.
ISSN: ESSN 1521-3773
PubMed: 36464641
DOI: 10.1002/ANIE.202216903
Page generated: Fri Aug 9 17:33:29 2024
|