Iron in PDB 8asj: Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Enzymatic activity of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
All present enzymatic activity of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation:
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
(pdb code 8asj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation, PDB code: 8asj:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 1 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:93.1
occ:1.00
|
FE1
|
A:FES201
|
0.0
|
93.1
|
1.0
|
S2
|
A:FES201
|
2.2
|
93.1
|
1.0
|
S1
|
A:FES201
|
2.2
|
93.1
|
1.0
|
SG
|
A:CYS149
|
2.3
|
83.6
|
1.0
|
SG
|
A:CYS129
|
2.3
|
88.0
|
1.0
|
CB
|
A:CYS129
|
2.6
|
88.0
|
1.0
|
FE2
|
A:FES201
|
2.7
|
93.1
|
1.0
|
CB
|
A:CYS149
|
3.5
|
83.6
|
1.0
|
CB
|
A:CYS134
|
3.8
|
83.6
|
1.0
|
N
|
A:CYS134
|
4.0
|
83.6
|
1.0
|
CB
|
A:HIS131
|
4.0
|
81.3
|
1.0
|
CA
|
A:CYS129
|
4.1
|
88.0
|
1.0
|
N
|
A:LEU132
|
4.2
|
77.5
|
1.0
|
OG
|
A:SER154
|
4.2
|
89.3
|
1.0
|
O
|
A:CYS134
|
4.3
|
83.6
|
1.0
|
CA
|
A:CYS134
|
4.3
|
83.6
|
1.0
|
ND1
|
A:HIS152
|
4.4
|
78.0
|
1.0
|
N
|
A:GLY133
|
4.4
|
81.1
|
1.0
|
C
|
A:CYS129
|
4.5
|
88.0
|
1.0
|
ND1
|
A:HIS131
|
4.6
|
81.3
|
1.0
|
O
|
A:CYS129
|
4.6
|
88.0
|
1.0
|
CB
|
A:CYS151
|
4.6
|
78.6
|
1.0
|
C
|
A:CYS134
|
4.6
|
83.6
|
1.0
|
SG
|
A:CYS134
|
4.7
|
83.6
|
1.0
|
N
|
A:HIS131
|
4.7
|
81.3
|
1.0
|
CG
|
A:HIS131
|
4.8
|
81.3
|
1.0
|
CA
|
A:HIS131
|
4.8
|
81.3
|
1.0
|
CA
|
A:CYS149
|
4.9
|
83.6
|
1.0
|
N
|
A:CYS129
|
4.9
|
88.0
|
1.0
|
C
|
A:GLY133
|
5.0
|
81.1
|
1.0
|
C
|
A:LEU132
|
5.0
|
77.5
|
1.0
|
|
Iron binding site 2 out
of 10 in 8asj
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Iron Binding Sites List in 8asj
Iron binding site 2 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:93.1
occ:1.00
|
FE2
|
A:FES201
|
0.0
|
93.1
|
1.0
|
ND1
|
A:HIS152
|
2.1
|
78.0
|
1.0
|
ND1
|
A:HIS131
|
2.2
|
81.3
|
1.0
|
S1
|
A:FES201
|
2.2
|
93.1
|
1.0
|
S2
|
A:FES201
|
2.2
|
93.1
|
1.0
|
FE1
|
A:FES201
|
2.7
|
93.1
|
1.0
|
CG
|
A:HIS131
|
3.0
|
81.3
|
1.0
|
CE1
|
A:HIS152
|
3.0
|
78.0
|
1.0
|
CG
|
A:HIS152
|
3.1
|
78.0
|
1.0
|
CB
|
A:HIS131
|
3.1
|
81.3
|
1.0
|
CE1
|
A:HIS131
|
3.3
|
81.3
|
1.0
|
CB
|
A:HIS152
|
3.4
|
78.0
|
1.0
|
N
|
A:LEU132
|
3.9
|
77.5
|
1.0
|
N
|
A:HIS152
|
3.9
|
78.0
|
1.0
|
SG
|
A:CYS149
|
4.0
|
83.6
|
1.0
|
NE2
|
A:HIS152
|
4.1
|
78.0
|
1.0
|
SG
|
A:CYS129
|
4.1
|
88.0
|
1.0
|
CD2
|
A:HIS152
|
4.1
|
78.0
|
1.0
|
CD2
|
A:HIS131
|
4.2
|
81.3
|
1.0
|
CA
|
A:HIS152
|
4.2
|
78.0
|
1.0
|
NE2
|
A:HIS131
|
4.3
|
81.3
|
1.0
|
CB
|
A:CYS151
|
4.4
|
78.6
|
1.0
|
CA
|
A:HIS131
|
4.4
|
81.3
|
1.0
|
CB
|
A:LEU132
|
4.5
|
77.5
|
1.0
|
C
|
A:HIS131
|
4.6
|
81.3
|
1.0
|
C
|
A:CYS151
|
4.6
|
78.6
|
1.0
|
CG
|
A:LEU132
|
4.7
|
77.5
|
1.0
|
CA
|
A:LEU132
|
4.7
|
77.5
|
1.0
|
CD1
|
A:LEU132
|
4.9
|
77.5
|
1.0
|
C
|
A:HIS152
|
4.9
|
78.0
|
1.0
|
OG
|
A:SER154
|
5.0
|
89.3
|
1.0
|
|
Iron binding site 3 out
of 10 in 8asj
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Iron Binding Sites List in 8asj
Iron binding site 3 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:56.2
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
56.2
|
1.0
|
ND
|
B:HEM501
|
2.0
|
56.2
|
1.0
|
NC
|
B:HEM501
|
2.0
|
56.2
|
1.0
|
NB
|
B:HEM501
|
2.0
|
56.2
|
1.0
|
NA
|
B:HEM501
|
2.0
|
56.2
|
1.0
|
NE2
|
B:HIS212
|
2.3
|
57.1
|
1.0
|
NE2
|
B:HIS111
|
2.3
|
51.0
|
1.0
|
CD2
|
B:HIS212
|
3.0
|
57.1
|
1.0
|
C4C
|
B:HEM501
|
3.0
|
56.2
|
1.0
|
C1D
|
B:HEM501
|
3.0
|
56.2
|
1.0
|
C4D
|
B:HEM501
|
3.0
|
56.2
|
1.0
|
C1C
|
B:HEM501
|
3.0
|
56.2
|
1.0
|
C4A
|
B:HEM501
|
3.0
|
56.2
|
1.0
|
C1B
|
B:HEM501
|
3.1
|
56.2
|
1.0
|
C1A
|
B:HEM501
|
3.1
|
56.2
|
1.0
|
C4B
|
B:HEM501
|
3.1
|
56.2
|
1.0
|
CD2
|
B:HIS111
|
3.1
|
51.0
|
1.0
|
CE1
|
B:HIS212
|
3.2
|
57.1
|
1.0
|
CE1
|
B:HIS111
|
3.4
|
51.0
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
56.2
|
1.0
|
CHB
|
B:HEM501
|
3.4
|
56.2
|
1.0
|
CHA
|
B:HEM501
|
3.4
|
56.2
|
1.0
|
CHC
|
B:HEM501
|
3.4
|
56.2
|
1.0
|
CG
|
B:HIS212
|
4.1
|
57.1
|
1.0
|
ND1
|
B:HIS212
|
4.2
|
57.1
|
1.0
|
CG
|
B:HIS111
|
4.2
|
51.0
|
1.0
|
C3C
|
B:HEM501
|
4.2
|
56.2
|
1.0
|
C2C
|
B:HEM501
|
4.2
|
56.2
|
1.0
|
C2D
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
C3D
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
C3A
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
C2A
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
C2B
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
56.2
|
1.0
|
ND1
|
B:HIS111
|
4.3
|
51.0
|
1.0
|
|
Iron binding site 4 out
of 10 in 8asj
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Iron Binding Sites List in 8asj
Iron binding site 4 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe502
b:57.7
occ:1.00
|
FE
|
B:HEM502
|
0.0
|
57.7
|
1.0
|
NA
|
B:HEM502
|
2.0
|
57.7
|
1.0
|
NB
|
B:HEM502
|
2.0
|
57.7
|
1.0
|
NC
|
B:HEM502
|
2.0
|
57.7
|
1.0
|
ND
|
B:HEM502
|
2.0
|
57.7
|
1.0
|
NE2
|
B:HIS198
|
2.2
|
56.6
|
1.0
|
NE2
|
B:HIS97
|
2.2
|
59.4
|
1.0
|
CE1
|
B:HIS198
|
3.0
|
56.6
|
1.0
|
C4A
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C1B
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C1A
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C4C
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C1D
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C1C
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C4B
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
C4D
|
B:HEM502
|
3.1
|
57.7
|
1.0
|
CE1
|
B:HIS97
|
3.2
|
59.4
|
1.0
|
CD2
|
B:HIS97
|
3.2
|
59.4
|
1.0
|
CD2
|
B:HIS198
|
3.2
|
56.6
|
1.0
|
CHB
|
B:HEM502
|
3.4
|
57.7
|
1.0
|
CHD
|
B:HEM502
|
3.4
|
57.7
|
1.0
|
CHC
|
B:HEM502
|
3.4
|
57.7
|
1.0
|
CHA
|
B:HEM502
|
3.4
|
57.7
|
1.0
|
ND1
|
B:HIS198
|
4.2
|
56.6
|
1.0
|
ND1
|
B:HIS97
|
4.3
|
59.4
|
1.0
|
C2A
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C3A
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C3C
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C2C
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C2B
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C2D
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C3B
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
C3D
|
B:HEM502
|
4.3
|
57.7
|
1.0
|
CG
|
B:HIS198
|
4.3
|
56.6
|
1.0
|
CG
|
B:HIS97
|
4.3
|
59.4
|
1.0
|
CA
|
B:GLY146
|
4.8
|
58.4
|
1.0
|
|
Iron binding site 5 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 5 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:74.8
occ:1.00
|
FE
|
C:HEC301
|
0.0
|
74.8
|
1.0
|
NA
|
C:HEC301
|
2.0
|
74.8
|
1.0
|
NC
|
C:HEC301
|
2.0
|
74.8
|
1.0
|
ND
|
C:HEC301
|
2.1
|
74.8
|
1.0
|
NB
|
C:HEC301
|
2.1
|
74.8
|
1.0
|
NE2
|
C:HIS62
|
2.2
|
74.6
|
1.0
|
CE
|
C:MET207
|
2.2
|
78.0
|
1.0
|
SD
|
C:MET207
|
2.5
|
78.0
|
1.0
|
CD2
|
C:HIS62
|
2.9
|
74.6
|
1.0
|
C4A
|
C:HEC301
|
3.0
|
74.8
|
1.0
|
C4C
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C1B
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C1D
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C1A
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C1C
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C4D
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
C4B
|
C:HEC301
|
3.1
|
74.8
|
1.0
|
CE1
|
C:HIS62
|
3.2
|
74.6
|
1.0
|
CHD
|
C:HEC301
|
3.4
|
74.8
|
1.0
|
CHB
|
C:HEC301
|
3.4
|
74.8
|
1.0
|
CHA
|
C:HEC301
|
3.4
|
74.8
|
1.0
|
CHC
|
C:HEC301
|
3.5
|
74.8
|
1.0
|
CG
|
C:MET207
|
3.8
|
78.0
|
1.0
|
CG
|
C:HIS62
|
4.1
|
74.6
|
1.0
|
ND1
|
C:HIS62
|
4.2
|
74.6
|
1.0
|
C3A
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C2C
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C3C
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C2A
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C2B
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C2D
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C3D
|
C:HEC301
|
4.3
|
74.8
|
1.0
|
C3B
|
C:HEC301
|
4.4
|
74.8
|
1.0
|
CB
|
C:MET207
|
4.8
|
78.0
|
1.0
|
|
Iron binding site 6 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 6 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:196.8
occ:1.00
|
FE1
|
E:FES201
|
0.0
|
196.8
|
1.0
|
S2
|
E:FES201
|
2.2
|
196.8
|
1.0
|
S1
|
E:FES201
|
2.2
|
196.8
|
1.0
|
SG
|
E:CYS149
|
2.4
|
191.6
|
1.0
|
SG
|
E:CYS129
|
2.4
|
178.2
|
1.0
|
FE2
|
E:FES201
|
2.5
|
196.8
|
1.0
|
CB
|
E:CYS129
|
3.1
|
178.2
|
1.0
|
CB
|
E:CYS149
|
3.2
|
191.6
|
1.0
|
CE1
|
E:HIS131
|
3.6
|
179.5
|
1.0
|
CB
|
E:CYS134
|
3.8
|
177.6
|
1.0
|
CB
|
E:HIS152
|
4.0
|
188.0
|
1.0
|
OH
|
E:TYR156
|
4.4
|
178.0
|
1.0
|
ND1
|
E:HIS131
|
4.4
|
179.5
|
1.0
|
NE2
|
E:HIS131
|
4.4
|
179.5
|
1.0
|
CD
|
E:PRO136
|
4.5
|
187.0
|
1.0
|
CA
|
E:CYS129
|
4.5
|
178.2
|
1.0
|
ND1
|
E:HIS152
|
4.5
|
188.0
|
1.0
|
CA
|
E:CYS149
|
4.6
|
191.6
|
1.0
|
CG
|
E:HIS152
|
4.7
|
188.0
|
1.0
|
CG
|
E:PRO136
|
4.7
|
187.0
|
1.0
|
CB
|
E:PRO136
|
4.7
|
187.0
|
1.0
|
O
|
E:CYS129
|
4.7
|
178.2
|
1.0
|
CE1
|
E:TYR156
|
4.8
|
178.0
|
1.0
|
SG
|
E:CYS134
|
4.8
|
177.6
|
1.0
|
CA
|
E:CYS134
|
4.8
|
177.6
|
1.0
|
N
|
E:CYS134
|
4.8
|
177.6
|
1.0
|
C
|
E:CYS129
|
4.8
|
178.2
|
1.0
|
|
Iron binding site 7 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 7 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:196.8
occ:1.00
|
FE2
|
E:FES201
|
0.0
|
196.8
|
1.0
|
CE1
|
E:HIS131
|
1.5
|
179.5
|
1.0
|
NE2
|
E:HIS131
|
2.0
|
179.5
|
1.0
|
S1
|
E:FES201
|
2.2
|
196.8
|
1.0
|
S2
|
E:FES201
|
2.2
|
196.8
|
1.0
|
FE1
|
E:FES201
|
2.5
|
196.8
|
1.0
|
ND1
|
E:HIS152
|
2.6
|
188.0
|
1.0
|
ND1
|
E:HIS131
|
2.7
|
179.5
|
1.0
|
CG
|
E:HIS152
|
3.1
|
188.0
|
1.0
|
CB
|
E:HIS152
|
3.3
|
188.0
|
1.0
|
CD2
|
E:HIS131
|
3.3
|
179.5
|
1.0
|
SG
|
E:CYS129
|
3.3
|
178.2
|
1.0
|
CE1
|
E:HIS152
|
3.5
|
188.0
|
1.0
|
CG
|
E:HIS131
|
3.6
|
179.5
|
1.0
|
CD2
|
E:HIS152
|
4.0
|
188.0
|
1.0
|
OG
|
E:SER154
|
4.0
|
183.3
|
1.0
|
SG
|
E:CYS149
|
4.1
|
191.6
|
1.0
|
NE2
|
E:HIS152
|
4.2
|
188.0
|
1.0
|
OH
|
E:TYR156
|
4.4
|
178.0
|
1.0
|
CB
|
E:CYS129
|
4.7
|
178.2
|
1.0
|
CB
|
E:CYS149
|
4.7
|
191.6
|
1.0
|
CA
|
E:HIS152
|
4.8
|
188.0
|
1.0
|
CB
|
E:SER154
|
4.8
|
183.3
|
1.0
|
|
Iron binding site 8 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 8 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe501
b:59.2
occ:1.00
|
FE
|
F:HEM501
|
0.0
|
59.2
|
1.0
|
ND
|
F:HEM501
|
2.0
|
59.2
|
1.0
|
NC
|
F:HEM501
|
2.0
|
59.2
|
1.0
|
NA
|
F:HEM501
|
2.0
|
59.2
|
1.0
|
NB
|
F:HEM501
|
2.0
|
59.2
|
1.0
|
NE2
|
F:HIS212
|
2.2
|
57.6
|
1.0
|
NE2
|
F:HIS111
|
2.3
|
54.3
|
1.0
|
CD2
|
F:HIS212
|
3.0
|
57.6
|
1.0
|
C4C
|
F:HEM501
|
3.0
|
59.2
|
1.0
|
C4A
|
F:HEM501
|
3.0
|
59.2
|
1.0
|
C1C
|
F:HEM501
|
3.0
|
59.2
|
1.0
|
C1D
|
F:HEM501
|
3.0
|
59.2
|
1.0
|
C4D
|
F:HEM501
|
3.1
|
59.2
|
1.0
|
C1B
|
F:HEM501
|
3.1
|
59.2
|
1.0
|
C1A
|
F:HEM501
|
3.1
|
59.2
|
1.0
|
C4B
|
F:HEM501
|
3.1
|
59.2
|
1.0
|
CE1
|
F:HIS212
|
3.1
|
57.6
|
1.0
|
CD2
|
F:HIS111
|
3.2
|
54.3
|
1.0
|
CE1
|
F:HIS111
|
3.2
|
54.3
|
1.0
|
CHD
|
F:HEM501
|
3.4
|
59.2
|
1.0
|
CHB
|
F:HEM501
|
3.4
|
59.2
|
1.0
|
CHA
|
F:HEM501
|
3.4
|
59.2
|
1.0
|
CHC
|
F:HEM501
|
3.4
|
59.2
|
1.0
|
CG
|
F:HIS212
|
4.1
|
57.6
|
1.0
|
ND1
|
F:HIS212
|
4.1
|
57.6
|
1.0
|
ND1
|
F:HIS111
|
4.2
|
54.3
|
1.0
|
CG
|
F:HIS111
|
4.2
|
54.3
|
1.0
|
C3C
|
F:HEM501
|
4.2
|
59.2
|
1.0
|
C2C
|
F:HEM501
|
4.2
|
59.2
|
1.0
|
C3A
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
C2A
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
C2D
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
C3D
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
C2B
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
C3B
|
F:HEM501
|
4.3
|
59.2
|
1.0
|
|
Iron binding site 9 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 9 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe502
b:57.4
occ:1.00
|
FE
|
F:HEM502
|
0.0
|
57.4
|
1.0
|
NA
|
F:HEM502
|
2.0
|
57.4
|
1.0
|
NC
|
F:HEM502
|
2.0
|
57.4
|
1.0
|
ND
|
F:HEM502
|
2.0
|
57.4
|
1.0
|
NB
|
F:HEM502
|
2.0
|
57.4
|
1.0
|
NE2
|
F:HIS198
|
2.1
|
57.5
|
1.0
|
NE2
|
F:HIS97
|
2.2
|
58.7
|
1.0
|
CE1
|
F:HIS198
|
2.9
|
57.5
|
1.0
|
CE1
|
F:HIS97
|
3.0
|
58.7
|
1.0
|
C1A
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C1C
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C4C
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C4A
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C4B
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C1D
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C4D
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
C1B
|
F:HEM502
|
3.1
|
57.4
|
1.0
|
CD2
|
F:HIS97
|
3.2
|
58.7
|
1.0
|
CD2
|
F:HIS198
|
3.2
|
57.5
|
1.0
|
CHC
|
F:HEM502
|
3.4
|
57.4
|
1.0
|
CHA
|
F:HEM502
|
3.4
|
57.4
|
1.0
|
CHB
|
F:HEM502
|
3.4
|
57.4
|
1.0
|
CHD
|
F:HEM502
|
3.4
|
57.4
|
1.0
|
ND1
|
F:HIS198
|
4.1
|
57.5
|
1.0
|
ND1
|
F:HIS97
|
4.1
|
58.7
|
1.0
|
CG
|
F:HIS97
|
4.3
|
58.7
|
1.0
|
C2A
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C2C
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C3C
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C3A
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C2D
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
CG
|
F:HIS198
|
4.3
|
57.5
|
1.0
|
C3B
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C3D
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
C2B
|
F:HEM502
|
4.3
|
57.4
|
1.0
|
CA
|
F:GLY146
|
4.7
|
59.6
|
1.0
|
CA
|
F:GLY62
|
5.0
|
61.0
|
1.0
|
|
Iron binding site 10 out
of 10 in 8asj
Go back to
Iron Binding Sites List in 8asj
Iron binding site 10 out
of 10 in the Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Four Subunit Cytochrome B-C1 Complex From Rhodobacter Sphaeroides in Native Nanodiscs - Focussed Refinement in the B-C Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe301
b:77.0
occ:1.00
|
FE
|
G:HEC301
|
0.0
|
77.0
|
1.0
|
NE2
|
G:HIS62
|
2.0
|
74.5
|
1.0
|
NA
|
G:HEC301
|
2.0
|
77.0
|
1.0
|
NC
|
G:HEC301
|
2.0
|
77.0
|
1.0
|
ND
|
G:HEC301
|
2.1
|
77.0
|
1.0
|
NB
|
G:HEC301
|
2.1
|
77.0
|
1.0
|
SD
|
G:MET207
|
2.2
|
79.8
|
1.0
|
CE1
|
G:HIS62
|
2.8
|
74.5
|
1.0
|
C1C
|
G:HEC301
|
3.0
|
77.0
|
1.0
|
C4A
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C1D
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C4C
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C1A
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C1B
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C4D
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
C4B
|
G:HEC301
|
3.1
|
77.0
|
1.0
|
CD2
|
G:HIS62
|
3.1
|
74.5
|
1.0
|
CE
|
G:MET207
|
3.3
|
79.8
|
1.0
|
CG
|
G:MET207
|
3.3
|
79.8
|
1.0
|
CHC
|
G:HEC301
|
3.4
|
77.0
|
1.0
|
CHD
|
G:HEC301
|
3.4
|
77.0
|
1.0
|
CHB
|
G:HEC301
|
3.4
|
77.0
|
1.0
|
CHA
|
G:HEC301
|
3.4
|
77.0
|
1.0
|
ND1
|
G:HIS62
|
4.0
|
74.5
|
1.0
|
CG
|
G:HIS62
|
4.2
|
74.5
|
1.0
|
CB
|
G:MET207
|
4.2
|
79.8
|
1.0
|
C3C
|
G:HEC301
|
4.2
|
77.0
|
1.0
|
C2C
|
G:HEC301
|
4.2
|
77.0
|
1.0
|
C3A
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
C2A
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
C2D
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
C2B
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
C3D
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
C3B
|
G:HEC301
|
4.3
|
77.0
|
1.0
|
|
Reference:
D.J.K.Swainsbury,
F.R.Hawkings,
E.C.Martin,
S.Musial,
J.H.Salisbury,
P.J.Jackson,
D.A.Farmer,
M.P.Johnson,
C.A.Siebert,
A.Hitchcock,
C.N.Hunter.
Cryo-Em Structure of the Four-Subunit Rhodobacter Sphaeroides Cytochrome BC1 Complex in Styrene Maleic Acid Nanodiscs Proc.Natl.Acad.Sci.Usa 2023.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2217922120
Page generated: Fri Aug 9 18:36:43 2024
|