Iron in PDB 8b6j: Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
(pdb code 8b6j). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila, PDB code: 8b6j:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 1 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:53.8
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
53.8
|
1.0
|
NE2
|
C:HIS84
|
2.0
|
55.9
|
1.0
|
ND
|
C:HEM501
|
2.0
|
53.8
|
1.0
|
NC
|
C:HEM501
|
2.0
|
53.8
|
1.0
|
NA
|
C:HEM501
|
2.0
|
53.8
|
1.0
|
NB
|
C:HEM501
|
2.0
|
53.8
|
1.0
|
NE2
|
C:HIS185
|
2.6
|
53.0
|
1.0
|
CE1
|
C:HIS84
|
2.8
|
55.9
|
1.0
|
HE1
|
C:HIS84
|
2.9
|
55.9
|
1.0
|
CD2
|
C:HIS84
|
3.0
|
55.9
|
1.0
|
C4D
|
C:HEM501
|
3.0
|
53.8
|
1.0
|
C1A
|
C:HEM501
|
3.0
|
53.8
|
1.0
|
C4B
|
C:HEM501
|
3.0
|
53.8
|
1.0
|
C1C
|
C:HEM501
|
3.1
|
53.8
|
1.0
|
C1D
|
C:HEM501
|
3.1
|
53.8
|
1.0
|
C4C
|
C:HEM501
|
3.1
|
53.8
|
1.0
|
C1B
|
C:HEM501
|
3.1
|
53.8
|
1.0
|
C4A
|
C:HEM501
|
3.1
|
53.8
|
1.0
|
HD2
|
C:HIS84
|
3.3
|
55.9
|
1.0
|
CHA
|
C:HEM501
|
3.4
|
53.8
|
1.0
|
CHC
|
C:HEM501
|
3.4
|
53.8
|
1.0
|
CHD
|
C:HEM501
|
3.4
|
53.8
|
1.0
|
CHB
|
C:HEM501
|
3.4
|
53.8
|
1.0
|
CD2
|
C:HIS185
|
3.5
|
53.0
|
1.0
|
HD2
|
C:HIS185
|
3.5
|
53.0
|
1.0
|
CE1
|
C:HIS185
|
3.6
|
53.0
|
1.0
|
HE1
|
C:HIS185
|
3.8
|
53.0
|
1.0
|
ND1
|
C:HIS84
|
3.9
|
55.9
|
1.0
|
CG
|
C:HIS84
|
4.0
|
55.9
|
1.0
|
C3D
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C2D
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C2A
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C2C
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C3C
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C3B
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C3A
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
C2B
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
HHA
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
HHC
|
C:HEM501
|
4.3
|
53.8
|
1.0
|
HA3
|
C:GLY49
|
4.3
|
53.8
|
1.0
|
HHD
|
C:HEM501
|
4.4
|
53.8
|
1.0
|
HHB
|
C:HEM501
|
4.4
|
53.8
|
1.0
|
HA3
|
C:GLY133
|
4.5
|
53.1
|
1.0
|
HA2
|
C:GLY49
|
4.5
|
53.8
|
1.0
|
HD1
|
C:HIS84
|
4.6
|
55.9
|
1.0
|
CG
|
C:HIS185
|
4.7
|
53.0
|
1.0
|
ND1
|
C:HIS185
|
4.7
|
53.0
|
1.0
|
HA2
|
C:GLY133
|
4.7
|
53.1
|
1.0
|
HD12
|
C:LEU52
|
4.8
|
53.5
|
1.0
|
HD12
|
C:LEU136
|
4.9
|
54.1
|
1.0
|
CA
|
C:GLY49
|
4.9
|
53.8
|
1.0
|
|
Iron binding site 2 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 2 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:58.7
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
58.7
|
1.0
|
NB
|
C:HEM502
|
2.0
|
58.7
|
1.0
|
NC
|
C:HEM502
|
2.0
|
58.7
|
1.0
|
NA
|
C:HEM502
|
2.0
|
58.7
|
1.0
|
ND
|
C:HEM502
|
2.0
|
58.7
|
1.0
|
NE2
|
C:HIS199
|
2.1
|
57.5
|
1.0
|
NE2
|
C:HIS98
|
2.6
|
58.8
|
1.0
|
HD2
|
C:HIS98
|
2.9
|
58.8
|
1.0
|
CD2
|
C:HIS199
|
3.0
|
57.5
|
1.0
|
C4C
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
C1B
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
C4A
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
C1D
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
C1C
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
C4B
|
C:HEM502
|
3.0
|
58.7
|
1.0
|
CD2
|
C:HIS98
|
3.1
|
58.8
|
1.0
|
C1A
|
C:HEM502
|
3.1
|
58.7
|
1.0
|
HD2
|
C:HIS199
|
3.1
|
57.5
|
1.0
|
C4D
|
C:HEM502
|
3.1
|
58.7
|
1.0
|
CE1
|
C:HIS199
|
3.1
|
57.5
|
1.0
|
CHD
|
C:HEM502
|
3.4
|
58.7
|
1.0
|
CHB
|
C:HEM502
|
3.4
|
58.7
|
1.0
|
HE1
|
C:HIS199
|
3.4
|
57.5
|
1.0
|
CHC
|
C:HEM502
|
3.4
|
58.7
|
1.0
|
CHA
|
C:HEM502
|
3.5
|
58.7
|
1.0
|
CE1
|
C:HIS98
|
3.8
|
58.8
|
1.0
|
HA3
|
C:GLY119
|
4.1
|
57.7
|
1.0
|
CG
|
C:HIS199
|
4.1
|
57.5
|
1.0
|
HE1
|
C:HIS98
|
4.2
|
58.8
|
1.0
|
ND1
|
C:HIS199
|
4.2
|
57.5
|
1.0
|
C3C
|
C:HEM502
|
4.2
|
58.7
|
1.0
|
C2C
|
C:HEM502
|
4.2
|
58.7
|
1.0
|
C2B
|
C:HEM502
|
4.2
|
58.7
|
1.0
|
HHD
|
C:HEM502
|
4.2
|
58.7
|
1.0
|
C3B
|
C:HEM502
|
4.2
|
58.7
|
1.0
|
C3A
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
C2D
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
C2A
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
C3D
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
HHB
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
CG
|
C:HIS98
|
4.3
|
58.8
|
1.0
|
HHC
|
C:HEM502
|
4.3
|
58.7
|
1.0
|
HHA
|
C:HEM502
|
4.4
|
58.7
|
1.0
|
HA3
|
C:GLY35
|
4.5
|
59.1
|
1.0
|
HA2
|
C:GLY119
|
4.5
|
57.7
|
1.0
|
ND1
|
C:HIS98
|
4.6
|
58.8
|
1.0
|
HA2
|
C:GLY35
|
4.7
|
59.1
|
1.0
|
CA
|
C:GLY119
|
4.8
|
57.7
|
1.0
|
HD1
|
C:HIS199
|
5.0
|
57.5
|
1.0
|
|
Iron binding site 3 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 3 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:50.4
occ:1.00
|
FE
|
D:HEC401
|
0.0
|
50.4
|
1.0
|
NC
|
D:HEC401
|
2.0
|
50.4
|
1.0
|
NA
|
D:HEC401
|
2.1
|
50.4
|
1.0
|
NB
|
D:HEC401
|
2.1
|
50.4
|
1.0
|
ND
|
D:HEC401
|
2.1
|
50.4
|
1.0
|
NE2
|
D:HIS85
|
2.1
|
49.2
|
1.0
|
CE1
|
D:HIS85
|
2.8
|
49.2
|
1.0
|
SD
|
D:MET209
|
2.8
|
51.3
|
1.0
|
HE1
|
D:HIS85
|
2.9
|
49.2
|
1.0
|
C4C
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C4A
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C1B
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C1D
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C1A
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C1C
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C4D
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
C4B
|
D:HEC401
|
3.1
|
50.4
|
1.0
|
CD2
|
D:HIS85
|
3.2
|
49.2
|
1.0
|
CHD
|
D:HEC401
|
3.4
|
50.4
|
1.0
|
CHB
|
D:HEC401
|
3.4
|
50.4
|
1.0
|
HG3
|
D:MET209
|
3.4
|
51.3
|
1.0
|
CHA
|
D:HEC401
|
3.5
|
50.4
|
1.0
|
CHC
|
D:HEC401
|
3.5
|
50.4
|
1.0
|
HD2
|
D:HIS85
|
3.5
|
49.2
|
1.0
|
CG
|
D:MET209
|
3.7
|
51.3
|
1.0
|
HZ
|
D:PHE162
|
3.8
|
50.0
|
1.0
|
HB2
|
D:MET209
|
3.8
|
51.3
|
1.0
|
ND1
|
D:HIS85
|
4.0
|
49.2
|
1.0
|
CG
|
D:HIS85
|
4.2
|
49.2
|
1.0
|
HB3
|
D:PRO159
|
4.2
|
48.6
|
1.0
|
CB
|
D:MET209
|
4.3
|
51.3
|
1.0
|
C3C
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C3A
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C2B
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C2A
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C2C
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C2D
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C3B
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
C3D
|
D:HEC401
|
4.3
|
50.4
|
1.0
|
CE
|
D:MET209
|
4.4
|
51.3
|
1.0
|
HHD
|
D:HEC401
|
4.4
|
50.4
|
1.0
|
HHB
|
D:HEC401
|
4.4
|
50.4
|
1.0
|
HHA
|
D:HEC401
|
4.4
|
50.4
|
1.0
|
HHC
|
D:HEC401
|
4.4
|
50.4
|
1.0
|
HG2
|
D:MET209
|
4.5
|
51.3
|
1.0
|
HE1
|
D:MET209
|
4.6
|
51.3
|
1.0
|
CZ
|
D:PHE162
|
4.6
|
50.0
|
1.0
|
HB3
|
D:MET209
|
4.7
|
51.3
|
1.0
|
HE2
|
D:MET209
|
4.7
|
51.3
|
1.0
|
HD1
|
D:HIS85
|
4.7
|
49.2
|
1.0
|
HB2
|
D:CYS84
|
4.9
|
51.0
|
1.0
|
HA
|
D:PRO159
|
4.9
|
48.6
|
1.0
|
HG3
|
D:GLN212
|
4.9
|
51.7
|
1.0
|
HE1
|
D:PHE162
|
5.0
|
50.0
|
1.0
|
|
Iron binding site 4 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 4 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe301
b:130.5
occ:1.00
|
FE1
|
E:FES301
|
0.0
|
130.5
|
1.0
|
S2
|
E:FES301
|
2.2
|
130.5
|
1.0
|
S1
|
E:FES301
|
2.2
|
130.5
|
1.0
|
SG
|
E:CYS197
|
2.3
|
126.3
|
1.0
|
SG
|
E:CYS216
|
2.3
|
125.2
|
1.0
|
HB3
|
E:HIS199
|
3.1
|
119.6
|
1.0
|
FE2
|
E:FES301
|
3.1
|
130.5
|
1.0
|
HB3
|
E:CYS216
|
3.2
|
125.2
|
1.0
|
CB
|
E:CYS216
|
3.2
|
125.2
|
1.0
|
HB2
|
E:CYS216
|
3.3
|
125.2
|
1.0
|
CB
|
E:CYS197
|
3.3
|
126.3
|
1.0
|
HB3
|
E:CYS197
|
3.4
|
126.3
|
1.0
|
HB2
|
E:CYS197
|
3.4
|
126.3
|
1.0
|
HB2
|
E:CYS202
|
3.6
|
123.5
|
1.0
|
HG
|
E:SER221
|
3.6
|
126.9
|
1.0
|
HB2
|
E:SER221
|
3.8
|
126.9
|
1.0
|
CB
|
E:HIS199
|
3.9
|
119.6
|
1.0
|
HB2
|
E:CYS218
|
3.9
|
116.5
|
1.0
|
H
|
E:LEU200
|
4.0
|
109.5
|
1.0
|
HB2
|
E:HIS199
|
4.0
|
119.6
|
1.0
|
HD1
|
E:HIS219
|
4.0
|
110.1
|
1.0
|
H
|
E:CYS202
|
4.1
|
123.5
|
1.0
|
HH
|
E:TYR223
|
4.2
|
132.0
|
1.0
|
OG
|
E:SER221
|
4.2
|
126.9
|
1.0
|
HG
|
E:CYS202
|
4.3
|
123.5
|
1.0
|
H
|
E:HIS199
|
4.3
|
119.6
|
1.0
|
H
|
E:HIS219
|
4.3
|
110.1
|
1.0
|
ND1
|
E:HIS199
|
4.4
|
119.6
|
1.0
|
CB
|
E:SER221
|
4.5
|
126.9
|
1.0
|
CB
|
E:CYS202
|
4.5
|
123.5
|
1.0
|
HB2
|
E:HIS219
|
4.5
|
110.1
|
1.0
|
H
|
E:GLY201
|
4.6
|
120.6
|
1.0
|
H
|
E:SER221
|
4.6
|
126.9
|
1.0
|
CG
|
E:HIS199
|
4.6
|
119.6
|
1.0
|
CA
|
E:CYS216
|
4.7
|
125.2
|
1.0
|
H
|
E:CYS218
|
4.7
|
116.5
|
1.0
|
ND1
|
E:HIS219
|
4.7
|
110.1
|
1.0
|
CA
|
E:CYS197
|
4.8
|
126.3
|
1.0
|
O
|
E:CYS202
|
4.8
|
123.5
|
1.0
|
N
|
E:LEU200
|
4.8
|
109.5
|
1.0
|
N
|
E:CYS202
|
4.8
|
123.5
|
1.0
|
CB
|
E:CYS218
|
4.9
|
116.5
|
1.0
|
HB2
|
E:LEU200
|
4.9
|
109.5
|
1.0
|
HA
|
E:CYS216
|
4.9
|
125.2
|
1.0
|
N
|
E:HIS199
|
4.9
|
119.6
|
1.0
|
OH
|
E:TYR223
|
4.9
|
132.0
|
1.0
|
CA
|
E:HIS199
|
5.0
|
119.6
|
1.0
|
HB3
|
E:SER221
|
5.0
|
126.9
|
1.0
|
SG
|
E:CYS202
|
5.0
|
123.5
|
1.0
|
|
Iron binding site 5 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 5 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe301
b:130.5
occ:1.00
|
FE2
|
E:FES301
|
0.0
|
130.5
|
1.0
|
HD1
|
E:HIS219
|
1.9
|
110.1
|
1.0
|
ND1
|
E:HIS199
|
2.1
|
119.6
|
1.0
|
ND1
|
E:HIS219
|
2.1
|
110.1
|
1.0
|
S1
|
E:FES301
|
2.2
|
130.5
|
1.0
|
S2
|
E:FES301
|
2.2
|
130.5
|
1.0
|
HB2
|
E:HIS219
|
2.4
|
110.1
|
1.0
|
CG
|
E:HIS219
|
2.6
|
110.1
|
1.0
|
CE1
|
E:HIS199
|
2.9
|
119.6
|
1.0
|
CE1
|
E:HIS219
|
3.0
|
110.1
|
1.0
|
CB
|
E:HIS219
|
3.0
|
110.1
|
1.0
|
HE1
|
E:HIS199
|
3.0
|
119.6
|
1.0
|
FE1
|
E:FES301
|
3.1
|
130.5
|
1.0
|
HB3
|
E:HIS199
|
3.2
|
119.6
|
1.0
|
CG
|
E:HIS199
|
3.2
|
119.6
|
1.0
|
HE1
|
E:HIS219
|
3.4
|
110.1
|
1.0
|
CD2
|
E:HIS219
|
3.5
|
110.1
|
1.0
|
HD12
|
E:LEU200
|
3.6
|
109.5
|
1.0
|
H
|
E:HIS219
|
3.6
|
110.1
|
1.0
|
HB3
|
E:HIS219
|
3.7
|
110.1
|
1.0
|
CB
|
E:HIS199
|
3.7
|
119.6
|
1.0
|
NE2
|
E:HIS219
|
3.7
|
110.1
|
1.0
|
HB2
|
E:CYS218
|
3.7
|
116.5
|
1.0
|
HG
|
E:SER221
|
3.7
|
126.9
|
1.0
|
N
|
E:HIS219
|
3.8
|
110.1
|
1.0
|
HG
|
E:LEU200
|
3.9
|
109.5
|
1.0
|
HB2
|
E:HIS199
|
4.0
|
119.6
|
1.0
|
CA
|
E:HIS219
|
4.0
|
110.1
|
1.0
|
NE2
|
E:HIS199
|
4.1
|
119.6
|
1.0
|
HB2
|
E:LEU200
|
4.2
|
109.5
|
1.0
|
CD2
|
E:HIS199
|
4.2
|
119.6
|
1.0
|
HG
|
E:CYS202
|
4.2
|
123.5
|
1.0
|
HD2
|
E:HIS219
|
4.3
|
110.1
|
1.0
|
CD1
|
E:LEU200
|
4.3
|
109.5
|
1.0
|
H
|
E:LEU200
|
4.4
|
109.5
|
1.0
|
HB3
|
E:CYS218
|
4.5
|
116.5
|
1.0
|
OG
|
E:SER221
|
4.5
|
126.9
|
1.0
|
HD11
|
E:LEU200
|
4.5
|
109.5
|
1.0
|
CG
|
E:LEU200
|
4.5
|
109.5
|
1.0
|
CB
|
E:CYS218
|
4.5
|
116.5
|
1.0
|
C
|
E:CYS218
|
4.5
|
116.5
|
1.0
|
HA
|
E:HIS219
|
4.7
|
110.1
|
1.0
|
SG
|
E:CYS216
|
4.7
|
125.2
|
1.0
|
N
|
E:LEU200
|
4.8
|
109.5
|
1.0
|
HE2
|
E:HIS199
|
4.8
|
119.6
|
1.0
|
CB
|
E:LEU200
|
4.8
|
109.5
|
1.0
|
SG
|
E:CYS197
|
4.9
|
126.3
|
1.0
|
C
|
E:HIS219
|
4.9
|
110.1
|
1.0
|
H
|
E:SER221
|
5.0
|
126.9
|
1.0
|
|
Iron binding site 6 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 6 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:Fe501
b:52.5
occ:1.00
|
FE
|
c:HEM501
|
0.0
|
52.5
|
1.0
|
NC
|
c:HEM501
|
2.0
|
52.5
|
1.0
|
NB
|
c:HEM501
|
2.0
|
52.5
|
1.0
|
NA
|
c:HEM501
|
2.0
|
52.5
|
1.0
|
ND
|
c:HEM501
|
2.0
|
52.5
|
1.0
|
NE2
|
c:HIS185
|
2.1
|
52.4
|
1.0
|
NE2
|
c:HIS84
|
2.6
|
54.6
|
1.0
|
CE1
|
c:HIS185
|
3.0
|
52.4
|
1.0
|
C1C
|
c:HEM501
|
3.0
|
52.5
|
1.0
|
C4B
|
c:HEM501
|
3.0
|
52.5
|
1.0
|
C4C
|
c:HEM501
|
3.0
|
52.5
|
1.0
|
C1A
|
c:HEM501
|
3.1
|
52.5
|
1.0
|
C4D
|
c:HEM501
|
3.1
|
52.5
|
1.0
|
C1D
|
c:HEM501
|
3.1
|
52.5
|
1.0
|
C4A
|
c:HEM501
|
3.1
|
52.5
|
1.0
|
C1B
|
c:HEM501
|
3.1
|
52.5
|
1.0
|
HE1
|
c:HIS185
|
3.1
|
52.4
|
1.0
|
CD2
|
c:HIS185
|
3.2
|
52.4
|
1.0
|
HD2
|
c:HIS185
|
3.4
|
52.4
|
1.0
|
CHC
|
c:HEM501
|
3.4
|
52.5
|
1.0
|
CHD
|
c:HEM501
|
3.4
|
52.5
|
1.0
|
CHA
|
c:HEM501
|
3.4
|
52.5
|
1.0
|
CHB
|
c:HEM501
|
3.4
|
52.5
|
1.0
|
CD2
|
c:HIS84
|
3.5
|
54.6
|
1.0
|
HD2
|
c:HIS84
|
3.5
|
54.6
|
1.0
|
CE1
|
c:HIS84
|
3.6
|
54.6
|
1.0
|
HE1
|
c:HIS84
|
3.8
|
54.6
|
1.0
|
ND1
|
c:HIS185
|
4.1
|
52.4
|
1.0
|
HA3
|
c:GLY133
|
4.2
|
52.1
|
1.0
|
CG
|
c:HIS185
|
4.2
|
52.4
|
1.0
|
C2C
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C3C
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C2A
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C3B
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C3A
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C2D
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C3D
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
C2B
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
HHC
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
HHB
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
HHD
|
c:HEM501
|
4.3
|
52.5
|
1.0
|
HHA
|
c:HEM501
|
4.4
|
52.5
|
1.0
|
HA2
|
c:GLY133
|
4.4
|
52.1
|
1.0
|
HA3
|
c:GLY49
|
4.5
|
54.1
|
1.0
|
HE22
|
c:GLN45
|
4.6
|
54.3
|
1.0
|
HE21
|
c:GLN45
|
4.6
|
54.3
|
1.0
|
HD12
|
c:LEU136
|
4.6
|
53.2
|
1.0
|
CG
|
c:HIS84
|
4.7
|
54.6
|
1.0
|
ND1
|
c:HIS84
|
4.7
|
54.6
|
1.0
|
CA
|
c:GLY133
|
4.8
|
52.1
|
1.0
|
HG12
|
c:VAL129
|
4.9
|
52.3
|
1.0
|
HA2
|
c:GLY49
|
4.9
|
54.1
|
1.0
|
HD1
|
c:HIS185
|
4.9
|
52.4
|
1.0
|
NE2
|
c:GLN45
|
4.9
|
54.3
|
1.0
|
|
Iron binding site 7 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 7 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:Fe502
b:56.6
occ:1.00
|
FE
|
c:HEM502
|
0.0
|
56.6
|
1.0
|
NC
|
c:HEM502
|
2.0
|
56.6
|
1.0
|
ND
|
c:HEM502
|
2.0
|
56.6
|
1.0
|
NB
|
c:HEM502
|
2.0
|
56.6
|
1.0
|
NA
|
c:HEM502
|
2.0
|
56.6
|
1.0
|
NE2
|
c:HIS199
|
2.1
|
55.2
|
1.0
|
NE2
|
c:HIS98
|
2.6
|
57.1
|
1.0
|
HD2
|
c:HIS98
|
2.9
|
57.1
|
1.0
|
CD2
|
c:HIS199
|
2.9
|
55.2
|
1.0
|
HD2
|
c:HIS199
|
3.0
|
55.2
|
1.0
|
C4C
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C1C
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C1D
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C4D
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C4B
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
CD2
|
c:HIS98
|
3.0
|
57.1
|
1.0
|
C4A
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C1A
|
c:HEM502
|
3.0
|
56.6
|
1.0
|
C1B
|
c:HEM502
|
3.1
|
56.6
|
1.0
|
CE1
|
c:HIS199
|
3.2
|
55.2
|
1.0
|
CHD
|
c:HEM502
|
3.4
|
56.6
|
1.0
|
CHB
|
c:HEM502
|
3.4
|
56.6
|
1.0
|
CHC
|
c:HEM502
|
3.4
|
56.6
|
1.0
|
CHA
|
c:HEM502
|
3.4
|
56.6
|
1.0
|
HE1
|
c:HIS199
|
3.5
|
55.2
|
1.0
|
CE1
|
c:HIS98
|
3.8
|
57.1
|
1.0
|
HA3
|
c:GLY119
|
4.1
|
55.4
|
1.0
|
CG
|
c:HIS199
|
4.1
|
55.2
|
1.0
|
HE1
|
c:HIS98
|
4.2
|
57.1
|
1.0
|
C3C
|
c:HEM502
|
4.2
|
56.6
|
1.0
|
ND1
|
c:HIS199
|
4.2
|
55.2
|
1.0
|
C2C
|
c:HEM502
|
4.2
|
56.6
|
1.0
|
C3D
|
c:HEM502
|
4.2
|
56.6
|
1.0
|
C2D
|
c:HEM502
|
4.2
|
56.6
|
1.0
|
C3A
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
C3B
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
C2A
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
C2B
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
CG
|
c:HIS98
|
4.3
|
57.1
|
1.0
|
HHD
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
HHB
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
HHC
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
HHA
|
c:HEM502
|
4.3
|
56.6
|
1.0
|
HA2
|
c:GLY119
|
4.5
|
55.4
|
1.0
|
ND1
|
c:HIS98
|
4.6
|
57.1
|
1.0
|
HA3
|
c:GLY35
|
4.7
|
58.2
|
1.0
|
CA
|
c:GLY119
|
4.8
|
55.4
|
1.0
|
HG2
|
c:MET203
|
4.8
|
58.0
|
1.0
|
HA2
|
c:GLY35
|
4.9
|
58.2
|
1.0
|
|
Iron binding site 8 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 8 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
d:Fe802
b:56.3
occ:1.00
|
FE
|
d:HEC802
|
0.0
|
56.3
|
1.0
|
NE2
|
d:HIS85
|
2.0
|
54.2
|
1.0
|
NC
|
d:HEC802
|
2.0
|
56.3
|
1.0
|
NA
|
d:HEC802
|
2.0
|
56.3
|
1.0
|
NB
|
d:HEC802
|
2.1
|
56.3
|
1.0
|
ND
|
d:HEC802
|
2.1
|
56.3
|
1.0
|
SD
|
d:MET209
|
2.8
|
57.8
|
1.0
|
CE1
|
d:HIS85
|
2.9
|
54.2
|
1.0
|
CD2
|
d:HIS85
|
3.0
|
54.2
|
1.0
|
C4C
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C1A
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C1C
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C4A
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C1D
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C4D
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C4B
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
C1B
|
d:HEC802
|
3.1
|
56.3
|
1.0
|
HE1
|
d:HIS85
|
3.1
|
54.2
|
1.0
|
HG3
|
d:MET209
|
3.2
|
57.8
|
1.0
|
HD2
|
d:HIS85
|
3.2
|
54.2
|
1.0
|
CHD
|
d:HEC802
|
3.4
|
56.3
|
1.0
|
CHA
|
d:HEC802
|
3.4
|
56.3
|
1.0
|
CHC
|
d:HEC802
|
3.4
|
56.3
|
1.0
|
CHB
|
d:HEC802
|
3.5
|
56.3
|
1.0
|
CG
|
d:MET209
|
3.5
|
57.8
|
1.0
|
HB2
|
d:MET209
|
3.8
|
57.8
|
1.0
|
HZ
|
d:PHE162
|
4.0
|
55.1
|
1.0
|
ND1
|
d:HIS85
|
4.1
|
54.2
|
1.0
|
CG
|
d:HIS85
|
4.1
|
54.2
|
1.0
|
CB
|
d:MET209
|
4.2
|
57.8
|
1.0
|
HB3
|
d:PRO159
|
4.2
|
54.2
|
1.0
|
C3C
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C2C
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C2A
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C3A
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C2B
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C3B
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C2D
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
C3D
|
d:HEC802
|
4.3
|
56.3
|
1.0
|
HG2
|
d:MET209
|
4.3
|
57.8
|
1.0
|
HHD
|
d:HEC802
|
4.4
|
56.3
|
1.0
|
HHA
|
d:HEC802
|
4.4
|
56.3
|
1.0
|
HHC
|
d:HEC802
|
4.4
|
56.3
|
1.0
|
HHB
|
d:HEC802
|
4.4
|
56.3
|
1.0
|
HG3
|
d:GLN212
|
4.5
|
59.0
|
1.0
|
CE
|
d:MET209
|
4.5
|
57.8
|
1.0
|
HB3
|
d:MET209
|
4.6
|
57.8
|
1.0
|
HE1
|
d:MET209
|
4.8
|
57.8
|
1.0
|
HB2
|
d:CYS84
|
4.8
|
54.5
|
1.0
|
CZ
|
d:PHE162
|
4.8
|
55.1
|
1.0
|
HD1
|
d:HIS85
|
4.8
|
54.2
|
1.0
|
HE2
|
d:MET209
|
4.8
|
57.8
|
1.0
|
HE21
|
d:GLN212
|
4.9
|
59.0
|
1.0
|
HE1
|
d:PHE162
|
4.9
|
55.1
|
1.0
|
HA
|
d:PRO159
|
5.0
|
54.2
|
1.0
|
|
Iron binding site 9 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 9 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Fe301
b:143.8
occ:1.00
|
FE1
|
e:FES301
|
0.0
|
143.8
|
1.0
|
S2
|
e:FES301
|
2.2
|
143.8
|
1.0
|
S1
|
e:FES301
|
2.2
|
143.8
|
1.0
|
SG
|
e:CYS218
|
2.3
|
139.6
|
1.0
|
SG
|
e:CYS202
|
2.3
|
134.7
|
1.0
|
SG
|
e:CYS216
|
2.3
|
142.4
|
1.0
|
SG
|
e:CYS197
|
2.3
|
135.4
|
1.0
|
HB3
|
e:CYS197
|
2.9
|
135.4
|
1.0
|
CB
|
e:CYS197
|
2.9
|
135.4
|
1.0
|
HB2
|
e:CYS197
|
2.9
|
135.4
|
1.0
|
FE2
|
e:FES301
|
3.2
|
143.8
|
1.0
|
HB3
|
e:CYS218
|
3.2
|
139.6
|
1.0
|
CB
|
e:CYS218
|
3.4
|
139.6
|
1.0
|
CB
|
e:CYS216
|
3.8
|
142.4
|
1.0
|
H
|
e:CYS202
|
3.8
|
134.7
|
1.0
|
HD1
|
e:HIS219
|
3.8
|
137.8
|
1.0
|
HB2
|
e:CYS218
|
3.9
|
139.6
|
1.0
|
HB2
|
e:CYS216
|
3.9
|
142.4
|
1.0
|
HB3
|
e:HIS199
|
3.9
|
132.3
|
1.0
|
CB
|
e:CYS202
|
4.0
|
134.7
|
1.0
|
HB3
|
e:CYS216
|
4.0
|
142.4
|
1.0
|
H
|
e:CYS218
|
4.1
|
139.6
|
1.0
|
H
|
e:LEU200
|
4.1
|
115.4
|
1.0
|
HB3
|
e:CYS202
|
4.1
|
134.7
|
1.0
|
HB3
|
e:LEU200
|
4.4
|
115.4
|
1.0
|
CA
|
e:CYS197
|
4.4
|
135.4
|
1.0
|
HB2
|
e:LEU200
|
4.4
|
115.4
|
1.0
|
H
|
e:HIS219
|
4.5
|
137.8
|
1.0
|
HG
|
e:SER221
|
4.5
|
143.6
|
1.0
|
N
|
e:CYS202
|
4.5
|
134.7
|
1.0
|
HB2
|
e:CYS202
|
4.6
|
134.7
|
1.0
|
H
|
e:GLY201
|
4.6
|
129.9
|
1.0
|
CA
|
e:CYS218
|
4.6
|
139.6
|
1.0
|
ND1
|
e:HIS219
|
4.7
|
137.8
|
1.0
|
N
|
e:CYS218
|
4.7
|
139.6
|
1.0
|
CA
|
e:CYS202
|
4.7
|
134.7
|
1.0
|
HA
|
e:CYS197
|
4.8
|
135.4
|
1.0
|
ND1
|
e:HIS199
|
4.8
|
132.3
|
1.0
|
N
|
e:LEU200
|
4.8
|
115.4
|
1.0
|
O
|
e:CYS202
|
4.9
|
134.7
|
1.0
|
CB
|
e:LEU200
|
4.9
|
115.4
|
1.0
|
CB
|
e:HIS199
|
4.9
|
132.3
|
1.0
|
HB2
|
e:SER221
|
5.0
|
143.6
|
1.0
|
H
|
e:HIS199
|
5.0
|
132.3
|
1.0
|
|
Iron binding site 10 out
of 10 in 8b6j
Go back to
Iron Binding Sites List in 8b6j
Iron binding site 10 out
of 10 in the Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of Cytochrome BC1 Complex (Complex-III) From Respiratory Supercomplex of Tetrahymena Thermophila within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Fe301
b:143.8
occ:1.00
|
FE2
|
e:FES301
|
0.0
|
143.8
|
1.0
|
HD1
|
e:HIS219
|
1.7
|
137.8
|
1.0
|
ND1
|
e:HIS199
|
2.2
|
132.3
|
1.0
|
ND1
|
e:HIS219
|
2.2
|
137.8
|
1.0
|
S1
|
e:FES301
|
2.2
|
143.8
|
1.0
|
S2
|
e:FES301
|
2.2
|
143.8
|
1.0
|
SG
|
e:CYS218
|
2.4
|
139.6
|
1.0
|
CE1
|
e:HIS219
|
2.6
|
137.8
|
1.0
|
HE1
|
e:HIS219
|
2.7
|
137.8
|
1.0
|
CE1
|
e:HIS199
|
3.0
|
132.3
|
1.0
|
HE1
|
e:HIS199
|
3.0
|
132.3
|
1.0
|
HB3
|
e:HIS199
|
3.1
|
132.3
|
1.0
|
FE1
|
e:FES301
|
3.2
|
143.8
|
1.0
|
HB2
|
e:CYS218
|
3.2
|
139.6
|
1.0
|
CG
|
e:HIS199
|
3.2
|
132.3
|
1.0
|
CG
|
e:HIS219
|
3.3
|
137.8
|
1.0
|
HB2
|
e:LEU200
|
3.4
|
115.4
|
1.0
|
CB
|
e:CYS218
|
3.4
|
139.6
|
1.0
|
HB2
|
e:HIS219
|
3.6
|
137.8
|
1.0
|
CB
|
e:HIS199
|
3.7
|
132.3
|
1.0
|
NE2
|
e:HIS219
|
3.8
|
137.8
|
1.0
|
HB3
|
e:CYS218
|
3.9
|
139.6
|
1.0
|
CB
|
e:HIS219
|
4.0
|
137.8
|
1.0
|
SG
|
e:CYS197
|
4.0
|
135.4
|
1.0
|
CD2
|
e:HIS219
|
4.1
|
137.8
|
1.0
|
NE2
|
e:HIS199
|
4.1
|
132.3
|
1.0
|
HD22
|
e:LEU200
|
4.2
|
115.4
|
1.0
|
HB2
|
e:HIS199
|
4.2
|
132.3
|
1.0
|
H
|
e:HIS219
|
4.2
|
137.8
|
1.0
|
CB
|
e:LEU200
|
4.3
|
115.4
|
1.0
|
CD2
|
e:HIS199
|
4.3
|
132.3
|
1.0
|
H
|
e:LEU200
|
4.3
|
115.4
|
1.0
|
HB3
|
e:LEU200
|
4.3
|
115.4
|
1.0
|
N
|
e:HIS219
|
4.3
|
137.8
|
1.0
|
HG
|
e:SER221
|
4.4
|
143.6
|
1.0
|
N
|
e:LEU200
|
4.5
|
115.4
|
1.0
|
C
|
e:CYS218
|
4.6
|
139.6
|
1.0
|
CA
|
e:CYS218
|
4.6
|
139.6
|
1.0
|
SG
|
e:CYS216
|
4.7
|
142.4
|
1.0
|
HB3
|
e:HIS219
|
4.7
|
137.8
|
1.0
|
CA
|
e:HIS219
|
4.8
|
137.8
|
1.0
|
HE2
|
e:HIS199
|
4.8
|
132.3
|
1.0
|
C
|
e:HIS199
|
4.9
|
132.3
|
1.0
|
HD13
|
e:LEU200
|
4.9
|
115.4
|
1.0
|
CA
|
e:HIS199
|
4.9
|
132.3
|
1.0
|
CD2
|
e:LEU200
|
4.9
|
115.4
|
1.0
|
HD2
|
e:HIS219
|
5.0
|
137.8
|
1.0
|
|
Reference:
A.Muhleip,
R.K.Flygaard,
R.Baradaran,
O.Haapanen,
T.Gruhl,
V.Tobiasson,
A.Marechal,
V.Sharma,
A.Amunts.
Structural Basis of Mitochondrial Membrane Bending By the I-II-III2-IV2 Supercomplex Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-05817-Y
Page generated: Fri Aug 9 18:52:21 2024
|