Atomistry » Iron » PDB 8aqo-8bf6 » 8ba0
Atomistry »
  Iron »
    PDB 8aqo-8bf6 »
      8ba0 »

Iron in PDB 8ba0: Drosophila Melanogaster Complex I in the Twisted State (DM2)

Enzymatic activity of Drosophila Melanogaster Complex I in the Twisted State (DM2)

All present enzymatic activity of Drosophila Melanogaster Complex I in the Twisted State (DM2):
1.6.99.3; 7.1.1.2;

Other elements in 8ba0:

The structure of Drosophila Melanogaster Complex I in the Twisted State (DM2) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Drosophila Melanogaster Complex I in the Twisted State (DM2) (pdb code 8ba0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Drosophila Melanogaster Complex I in the Twisted State (DM2), PDB code: 8ba0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 1 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE1 B:SF4301 0.0 64.7 1.0
SG B:CYS161 2.2 68.0 1.0
S2 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
CB B:CYS161 3.0 68.0 1.0
S1 B:SF4301 3.9 64.7 1.0
N B:CYS161 3.9 68.0 1.0
CA B:CYS161 4.0 68.0 1.0
SG B:CYS97 4.4 74.6 1.0
SG B:CYS191 4.5 65.8 1.0
CQ1 D:2MR123 4.6 75.6 1.0
CG2 B:THR133 4.9 75.0 1.0
SG B:CYS96 4.9 76.5 1.0

Iron binding site 2 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 2 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE2 B:SF4301 0.0 64.7 1.0
SG B:CYS191 2.3 65.8 1.0
S1 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
CA B:CYS191 3.2 65.8 1.0
CB B:CYS191 3.2 65.8 1.0
C B:CYS191 3.5 65.8 1.0
S2 B:SF4301 3.9 64.7 1.0
O B:CYS191 3.9 65.8 1.0
N B:PRO192 3.9 70.0 1.0
CA B:PRO192 4.4 70.0 1.0
SG B:CYS96 4.5 76.5 1.0
N B:CYS191 4.6 65.8 1.0
ND1 D:HIS228 4.6 74.0 1.0
O B:GLY190 4.6 64.2 1.0
SG B:CYS161 4.7 68.0 1.0
CE1 D:HIS228 4.7 74.0 1.0
NH1 D:ARG143 4.8 72.6 1.0
CD B:PRO192 4.8 70.0 1.0
SG B:CYS97 5.0 74.6 1.0
N B:SER160 5.0 64.3 1.0

Iron binding site 3 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 3 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE3 B:SF4301 0.0 64.7 1.0
SG B:CYS96 2.2 76.5 1.0
S1 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
S2 B:SF4301 2.3 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
CB B:CYS96 2.8 76.5 1.0
CE1 D:HIS228 3.7 74.0 1.0
S3 B:SF4301 3.9 64.7 1.0
N B:CYS97 4.0 74.6 1.0
CA B:CYS96 4.1 76.5 1.0
C B:CYS96 4.1 76.5 1.0
ND1 D:HIS228 4.4 74.0 1.0
SG B:CYS97 4.5 74.6 1.0
NE2 D:HIS228 4.6 74.0 1.0
SG B:CYS191 4.6 65.8 1.0
SG B:CYS161 4.7 68.0 1.0
CA B:CYS97 4.8 74.6 1.0
O B:CYS96 4.8 76.5 1.0
N B:CYS96 4.9 76.5 1.0
CG D:ARG143 4.9 72.6 1.0
CQ1 D:2MR123 5.0 75.6 1.0

Iron binding site 4 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 4 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE4 B:SF4301 0.0 64.7 1.0
SG B:CYS97 2.3 74.6 1.0
S2 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
S1 B:SF4301 2.3 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
CB B:CYS97 3.5 74.6 1.0
N B:CYS97 3.7 74.6 1.0
CA B:CYS97 3.8 74.6 1.0
S4 B:SF4301 3.9 64.7 1.0
CA B:GLY159 4.3 62.5 1.0
SG B:CYS96 4.4 76.5 1.0
CB B:CYS161 4.4 68.0 1.0
CA B:PRO192 4.5 70.0 1.0
SG B:CYS161 4.5 68.0 1.0
CB B:PRO192 4.6 70.0 1.0
C B:CYS96 4.6 76.5 1.0
N B:CYS161 4.6 68.0 1.0
CB B:CYS96 4.6 76.5 1.0
N B:SER160 4.7 64.3 1.0
N B:PRO192 4.8 70.0 1.0
CA B:CYS191 4.8 65.8 1.0
SG B:CYS191 4.9 65.8 1.0
C B:GLY159 4.9 62.5 1.0
CA B:GLY132 4.9 71.8 1.0
N B:GLY132 4.9 71.8 1.0

Iron binding site 5 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 5 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:106.8
occ:1.00
 FE1 E:FES301 0.0 106.8 1.0
SG E:CYS133 2.2 107.8 1.0
SG E:CYS128 2.2 102.3 1.0
S2 E:FES301 2.2 106.8 1.0
S1 E:FES301 2.2 106.8 1.0
FE2 E:FES301 2.6 106.8 1.0
CB E:CYS128 3.1 102.3 1.0
CB E:CYS133 3.2 107.8 1.0
CG E:MET178 4.1 113.0 1.0
O E:CYS128 4.2 102.3 1.0
CA E:CYS173 4.3 107.9 1.0
SD E:MET178 4.3 113.0 1.0
CA E:CYS128 4.4 102.3 1.0
SG E:CYS173 4.4 107.9 1.0
CA E:CYS133 4.4 107.8 1.0
N E:CYS173 4.5 107.9 1.0
N E:LEU170 4.5 104.1 1.0
N E:CYS133 4.5 107.8 1.0
C E:CYS128 4.6 102.3 1.0
SG E:CYS169 4.6 100.1 1.0
CA E:CYS169 4.7 100.1 1.0
C E:ALA172 4.8 110.2 1.0
O E:GLU168 4.8 95.7 1.0
O E:THR130 4.9 99.7 1.0
CB E:CYS173 4.9 107.9 1.0
O E:ALA172 4.9 110.2 1.0
OG1 E:THR130 5.0 99.7 1.0

Iron binding site 6 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 6 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:106.8
occ:1.00
 FE2 E:FES301 0.0 106.8 1.0
SG E:CYS173 2.2 107.9 1.0
S1 E:FES301 2.2 106.8 1.0
S2 E:FES301 2.2 106.8 1.0
SG E:CYS169 2.2 100.1 1.0
FE1 E:FES301 2.6 106.8 1.0
CB E:CYS169 3.3 100.1 1.0
CB E:CYS173 3.4 107.9 1.0
CA E:CYS173 3.5 107.9 1.0
N E:CYS173 3.6 107.9 1.0
CA E:CYS169 3.6 100.1 1.0
N E:LEU170 3.9 104.1 1.0
C E:CYS169 4.2 100.1 1.0
SG E:CYS133 4.4 107.8 1.0
N E:GLY171 4.4 107.4 1.0
CD E:PRO132 4.5 108.4 1.0
C E:ALA172 4.5 110.2 1.0
N E:ALA172 4.6 110.2 1.0
SG E:CYS128 4.6 102.3 1.0
OG1 E:THR130 4.6 99.7 1.0
N F:GLY138 4.7 103.9 1.0
CB E:CYS128 4.7 102.3 1.0
O E:GLU168 4.8 95.7 1.0
O E:THR131 4.9 102.9 1.0
N E:CYS169 4.9 100.1 1.0
C E:CYS173 4.9 107.9 1.0
CA E:LEU170 5.0 104.1 1.0

Iron binding site 7 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 7 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE1 F:SF4502 0.0 64.5 1.0
SG F:CYS397 2.2 66.4 1.0
S2 F:SF4502 2.3 64.5 1.0
S4 F:SF4502 2.3 64.5 1.0
S3 F:SF4502 2.3 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS397 3.1 66.4 1.0
N F:CYS397 3.5 66.4 1.0
S1 F:SF4502 3.9 64.5 1.0
CA F:CYS397 3.9 66.4 1.0
CB F:CYS400 4.2 67.4 1.0
N F:ILE439 4.2 67.9 1.0
CB F:ILE439 4.3 67.9 1.0
N F:GLN396 4.4 66.8 1.0
C F:GLN396 4.5 66.8 1.0
CB F:GLN396 4.5 66.8 1.0
N F:CYS440 4.5 74.0 1.0
SG F:CYS400 4.5 67.4 1.0
SG F:CYS394 4.6 68.7 1.0
SG F:CYS440 4.7 74.0 1.0
CA F:GLN396 4.7 66.8 1.0
CA F:ILE439 4.7 67.9 1.0
CG1 F:ILE439 4.8 67.9 1.0
CB F:THR438 4.9 70.1 1.0
CD1 F:ILE439 4.9 67.9 1.0
C F:CYS397 5.0 66.4 1.0

Iron binding site 8 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 8 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE2 F:SF4502 0.0 64.5 1.0
SG F:CYS400 2.2 67.4 1.0
S1 F:SF4502 2.3 64.5 1.0
S4 F:SF4502 2.3 64.5 1.0
S3 F:SF4502 2.3 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS400 2.8 67.4 1.0
S2 F:SF4502 3.8 64.5 1.0
CA F:CYS400 4.1 67.4 1.0
CB F:SER393 4.3 73.5 1.0
C F:CYS400 4.4 67.4 1.0
CD2 F:LEU442 4.5 79.3 1.0
SG F:CYS440 4.5 74.0 1.0
O F:CYS400 4.6 67.4 1.0
CA F:SER393 4.7 73.5 1.0
SG F:CYS397 4.7 66.4 1.0
N F:CYS394 4.7 68.7 1.0
N F:GLY395 4.7 64.2 1.0
CB F:LEU442 4.7 79.3 1.0
C F:SER393 4.8 73.5 1.0
SG F:CYS394 4.8 68.7 1.0
CB F:CYS397 4.9 66.4 1.0
CG F:LEU442 5.0 79.3 1.0

Iron binding site 9 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 9 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE3 F:SF4502 0.0 64.5 1.0
SG F:CYS440 2.2 74.0 1.0
S4 F:SF4502 2.3 64.5 1.0
S2 F:SF4502 2.3 64.5 1.0
S1 F:SF4502 2.3 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS440 3.4 74.0 1.0
N F:CYS440 3.8 74.0 1.0
S3 F:SF4502 3.9 64.5 1.0
CA F:CYS440 4.1 74.0 1.0
CB F:LEU442 4.2 79.3 1.0
CG F:PRO238 4.2 74.0 1.0
CD1 F:ILE220 4.3 80.0 1.0
O F:CYS440 4.3 74.0 1.0
C F:CYS440 4.5 74.0 1.0
SG F:CYS394 4.6 68.7 1.0
SG F:CYS400 4.6 67.4 1.0
SG F:CYS397 4.7 66.4 1.0
CD2 F:LEU442 4.7 79.3 1.0
CD F:PRO238 4.7 74.0 1.0
N F:LEU442 4.9 79.3 1.0
C F:ILE439 5.0 67.9 1.0

Iron binding site 10 out of 28 in 8ba0

Go back to Iron Binding Sites List in 8ba0
Iron binding site 10 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE4 F:SF4502 0.0 64.5 1.0
SG F:CYS394 2.2 68.7 1.0
S3 F:SF4502 2.3 64.5 1.0
S1 F:SF4502 2.3 64.5 1.0
S2 F:SF4502 2.3 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
N F:GLY395 3.4 64.2 1.0
CB F:CYS394 3.5 68.7 1.0
N F:CYS394 3.6 68.7 1.0
N F:GLN396 3.7 66.8 1.0
S4 F:SF4502 3.9 64.5 1.0
CA F:CYS394 3.9 68.7 1.0
C F:CYS394 4.2 68.7 1.0
CB F:GLN396 4.2 66.8 1.0
CA F:GLY395 4.3 64.2 1.0
C F:SER393 4.4 73.5 1.0
CD F:PRO238 4.5 74.0 1.0
CA F:GLN396 4.5 66.8 1.0
C F:GLY395 4.5 64.2 1.0
N F:CYS397 4.6 66.4 1.0
SG F:CYS397 4.7 66.4 1.0
SG F:CYS440 4.7 74.0 1.0
SG F:CYS400 4.7 67.4 1.0
CG F:PRO238 4.8 74.0 1.0
CA F:SER393 5.0 73.5 1.0

Reference:

A.A.Agip, I.Chung, A.Sanchez-Martinez, A.J.Whitworth, J.Hirst. Cryo-Em Structures of Mitochondrial Respiratory Complex I From Drosophila Melanogaster. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 36622099
DOI: 10.7554/ELIFE.84424
Page generated: Fri Aug 9 18:53:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy