Iron in PDB 8ba0: Drosophila Melanogaster Complex I in the Twisted State (DM2)

Enzymatic activity of Drosophila Melanogaster Complex I in the Twisted State (DM2)

All present enzymatic activity of Drosophila Melanogaster Complex I in the Twisted State (DM2):
1.6.99.3; 7.1.1.2;

Other elements in 8ba0:

The structure of Drosophila Melanogaster Complex I in the Twisted State (DM2) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Drosophila Melanogaster Complex I in the Twisted State (DM2) (pdb code 8ba0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Drosophila Melanogaster Complex I in the Twisted State (DM2), PDB code: 8ba0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 8ba0

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Iron binding site 1 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE1 B:SF4301 0.0 64.7 1.0
SG B:CYS161 2.2 68.0 1.0
S2 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
CB B:CYS161 3.0 68.0 1.0
S1 B:SF4301 3.9 64.7 1.0
N B:CYS161 3.9 68.0 1.0
CA B:CYS161 4.0 68.0 1.0
SG B:CYS97 4.4 74.6 1.0
SG B:CYS191 4.5 65.8 1.0
CQ1 D:2MR123 4.6 75.6 1.0
CG2 B:THR133 4.9 75.0 1.0
SG B:CYS96 4.9 76.5 1.0

Iron binding site 2 out of 28 in 8ba0

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Iron binding site 2 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE2 B:SF4301 0.0 64.7 1.0
SG B:CYS191 2.3 65.8 1.0
S1 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
CA B:CYS191 3.2 65.8 1.0
CB B:CYS191 3.2 65.8 1.0
C B:CYS191 3.5 65.8 1.0
S2 B:SF4301 3.9 64.7 1.0
O B:CYS191 3.9 65.8 1.0
N B:PRO192 3.9 70.0 1.0
CA B:PRO192 4.4 70.0 1.0
SG B:CYS96 4.5 76.5 1.0
N B:CYS191 4.6 65.8 1.0
ND1 D:HIS228 4.6 74.0 1.0
O B:GLY190 4.6 64.2 1.0
SG B:CYS161 4.7 68.0 1.0
CE1 D:HIS228 4.7 74.0 1.0
NH1 D:ARG143 4.8 72.6 1.0
CD B:PRO192 4.8 70.0 1.0
SG B:CYS97 5.0 74.6 1.0
N B:SER160 5.0 64.3 1.0

Iron binding site 3 out of 28 in 8ba0

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Iron binding site 3 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE3 B:SF4301 0.0 64.7 1.0
SG B:CYS96 2.2 76.5 1.0
S1 B:SF4301 2.3 64.7 1.0
S4 B:SF4301 2.3 64.7 1.0
S2 B:SF4301 2.3 64.7 1.0
FE4 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
CB B:CYS96 2.8 76.5 1.0
CE1 D:HIS228 3.7 74.0 1.0
S3 B:SF4301 3.9 64.7 1.0
N B:CYS97 4.0 74.6 1.0
CA B:CYS96 4.1 76.5 1.0
C B:CYS96 4.1 76.5 1.0
ND1 D:HIS228 4.4 74.0 1.0
SG B:CYS97 4.5 74.6 1.0
NE2 D:HIS228 4.6 74.0 1.0
SG B:CYS191 4.6 65.8 1.0
SG B:CYS161 4.7 68.0 1.0
CA B:CYS97 4.8 74.6 1.0
O B:CYS96 4.8 76.5 1.0
N B:CYS96 4.9 76.5 1.0
CG D:ARG143 4.9 72.6 1.0
CQ1 D:2MR123 5.0 75.6 1.0

Iron binding site 4 out of 28 in 8ba0

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Iron binding site 4 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:64.7
occ:1.00
 FE4 B:SF4301 0.0 64.7 1.0
SG B:CYS97 2.3 74.6 1.0
S2 B:SF4301 2.3 64.7 1.0
S3 B:SF4301 2.3 64.7 1.0
S1 B:SF4301 2.3 64.7 1.0
FE1 B:SF4301 2.7 64.7 1.0
FE3 B:SF4301 2.7 64.7 1.0
FE2 B:SF4301 2.7 64.7 1.0
CB B:CYS97 3.5 74.6 1.0
N B:CYS97 3.7 74.6 1.0
CA B:CYS97 3.8 74.6 1.0
S4 B:SF4301 3.9 64.7 1.0
CA B:GLY159 4.3 62.5 1.0
SG B:CYS96 4.4 76.5 1.0
CB B:CYS161 4.4 68.0 1.0
CA B:PRO192 4.5 70.0 1.0
SG B:CYS161 4.5 68.0 1.0
CB B:PRO192 4.6 70.0 1.0
C B:CYS96 4.6 76.5 1.0
N B:CYS161 4.6 68.0 1.0
CB B:CYS96 4.6 76.5 1.0
N B:SER160 4.7 64.3 1.0
N B:PRO192 4.8 70.0 1.0
CA B:CYS191 4.8 65.8 1.0
SG B:CYS191 4.9 65.8 1.0
C B:GLY159 4.9 62.5 1.0
CA B:GLY132 4.9 71.8 1.0
N B:GLY132 4.9 71.8 1.0

Iron binding site 5 out of 28 in 8ba0

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Iron binding site 5 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:106.8
occ:1.00
 FE1 E:FES301 0.0 106.8 1.0
SG E:CYS133 2.2 107.8 1.0
SG E:CYS128 2.2 102.3 1.0
S2 E:FES301 2.2 106.8 1.0
S1 E:FES301 2.2 106.8 1.0
FE2 E:FES301 2.6 106.8 1.0
CB E:CYS128 3.1 102.3 1.0
CB E:CYS133 3.2 107.8 1.0
CG E:MET178 4.1 113.0 1.0
O E:CYS128 4.2 102.3 1.0
CA E:CYS173 4.3 107.9 1.0
SD E:MET178 4.3 113.0 1.0
CA E:CYS128 4.4 102.3 1.0
SG E:CYS173 4.4 107.9 1.0
CA E:CYS133 4.4 107.8 1.0
N E:CYS173 4.5 107.9 1.0
N E:LEU170 4.5 104.1 1.0
N E:CYS133 4.5 107.8 1.0
C E:CYS128 4.6 102.3 1.0
SG E:CYS169 4.6 100.1 1.0
CA E:CYS169 4.7 100.1 1.0
C E:ALA172 4.8 110.2 1.0
O E:GLU168 4.8 95.7 1.0
O E:THR130 4.9 99.7 1.0
CB E:CYS173 4.9 107.9 1.0
O E:ALA172 4.9 110.2 1.0
OG1 E:THR130 5.0 99.7 1.0

Iron binding site 6 out of 28 in 8ba0

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Iron binding site 6 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:106.8
occ:1.00
 FE2 E:FES301 0.0 106.8 1.0
SG E:CYS173 2.2 107.9 1.0
S1 E:FES301 2.2 106.8 1.0
S2 E:FES301 2.2 106.8 1.0
SG E:CYS169 2.2 100.1 1.0
FE1 E:FES301 2.6 106.8 1.0
CB E:CYS169 3.3 100.1 1.0
CB E:CYS173 3.4 107.9 1.0
CA E:CYS173 3.5 107.9 1.0
N E:CYS173 3.6 107.9 1.0
CA E:CYS169 3.6 100.1 1.0
N E:LEU170 3.9 104.1 1.0
C E:CYS169 4.2 100.1 1.0
SG E:CYS133 4.4 107.8 1.0
N E:GLY171 4.4 107.4 1.0
CD E:PRO132 4.5 108.4 1.0
C E:ALA172 4.5 110.2 1.0
N E:ALA172 4.6 110.2 1.0
SG E:CYS128 4.6 102.3 1.0
OG1 E:THR130 4.6 99.7 1.0
N F:GLY138 4.7 103.9 1.0
CB E:CYS128 4.7 102.3 1.0
O E:GLU168 4.8 95.7 1.0
O E:THR131 4.9 102.9 1.0
N E:CYS169 4.9 100.1 1.0
C E:CYS173 4.9 107.9 1.0
CA E:LEU170 5.0 104.1 1.0

Iron binding site 7 out of 28 in 8ba0

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Iron binding site 7 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE1 F:SF4502 0.0 64.5 1.0
SG F:CYS397 2.2 66.4 1.0
S2 F:SF4502 2.3 64.5 1.0
S4 F:SF4502 2.3 64.5 1.0
S3 F:SF4502 2.3 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS397 3.1 66.4 1.0
N F:CYS397 3.5 66.4 1.0
S1 F:SF4502 3.9 64.5 1.0
CA F:CYS397 3.9 66.4 1.0
CB F:CYS400 4.2 67.4 1.0
N F:ILE439 4.2 67.9 1.0
CB F:ILE439 4.3 67.9 1.0
N F:GLN396 4.4 66.8 1.0
C F:GLN396 4.5 66.8 1.0
CB F:GLN396 4.5 66.8 1.0
N F:CYS440 4.5 74.0 1.0
SG F:CYS400 4.5 67.4 1.0
SG F:CYS394 4.6 68.7 1.0
SG F:CYS440 4.7 74.0 1.0
CA F:GLN396 4.7 66.8 1.0
CA F:ILE439 4.7 67.9 1.0
CG1 F:ILE439 4.8 67.9 1.0
CB F:THR438 4.9 70.1 1.0
CD1 F:ILE439 4.9 67.9 1.0
C F:CYS397 5.0 66.4 1.0

Iron binding site 8 out of 28 in 8ba0

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Iron binding site 8 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE2 F:SF4502 0.0 64.5 1.0
SG F:CYS400 2.2 67.4 1.0
S1 F:SF4502 2.3 64.5 1.0
S4 F:SF4502 2.3 64.5 1.0
S3 F:SF4502 2.3 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS400 2.8 67.4 1.0
S2 F:SF4502 3.8 64.5 1.0
CA F:CYS400 4.1 67.4 1.0
CB F:SER393 4.3 73.5 1.0
C F:CYS400 4.4 67.4 1.0
CD2 F:LEU442 4.5 79.3 1.0
SG F:CYS440 4.5 74.0 1.0
O F:CYS400 4.6 67.4 1.0
CA F:SER393 4.7 73.5 1.0
SG F:CYS397 4.7 66.4 1.0
N F:CYS394 4.7 68.7 1.0
N F:GLY395 4.7 64.2 1.0
CB F:LEU442 4.7 79.3 1.0
C F:SER393 4.8 73.5 1.0
SG F:CYS394 4.8 68.7 1.0
CB F:CYS397 4.9 66.4 1.0
CG F:LEU442 5.0 79.3 1.0

Iron binding site 9 out of 28 in 8ba0

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Iron binding site 9 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE3 F:SF4502 0.0 64.5 1.0
SG F:CYS440 2.2 74.0 1.0
S4 F:SF4502 2.3 64.5 1.0
S2 F:SF4502 2.3 64.5 1.0
S1 F:SF4502 2.3 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE4 F:SF4502 2.7 64.5 1.0
CB F:CYS440 3.4 74.0 1.0
N F:CYS440 3.8 74.0 1.0
S3 F:SF4502 3.9 64.5 1.0
CA F:CYS440 4.1 74.0 1.0
CB F:LEU442 4.2 79.3 1.0
CG F:PRO238 4.2 74.0 1.0
CD1 F:ILE220 4.3 80.0 1.0
O F:CYS440 4.3 74.0 1.0
C F:CYS440 4.5 74.0 1.0
SG F:CYS394 4.6 68.7 1.0
SG F:CYS400 4.6 67.4 1.0
SG F:CYS397 4.7 66.4 1.0
CD2 F:LEU442 4.7 79.3 1.0
CD F:PRO238 4.7 74.0 1.0
N F:LEU442 4.9 79.3 1.0
C F:ILE439 5.0 67.9 1.0

Iron binding site 10 out of 28 in 8ba0

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Iron binding site 10 out of 28 in the Drosophila Melanogaster Complex I in the Twisted State (DM2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Drosophila Melanogaster Complex I in the Twisted State (DM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:64.5
occ:1.00
 FE4 F:SF4502 0.0 64.5 1.0
SG F:CYS394 2.2 68.7 1.0
S3 F:SF4502 2.3 64.5 1.0
S1 F:SF4502 2.3 64.5 1.0
S2 F:SF4502 2.3 64.5 1.0
FE2 F:SF4502 2.7 64.5 1.0
FE3 F:SF4502 2.7 64.5 1.0
FE1 F:SF4502 2.7 64.5 1.0
N F:GLY395 3.4 64.2 1.0
CB F:CYS394 3.5 68.7 1.0
N F:CYS394 3.6 68.7 1.0
N F:GLN396 3.7 66.8 1.0
S4 F:SF4502 3.9 64.5 1.0
CA F:CYS394 3.9 68.7 1.0
C F:CYS394 4.2 68.7 1.0
CB F:GLN396 4.2 66.8 1.0
CA F:GLY395 4.3 64.2 1.0
C F:SER393 4.4 73.5 1.0
CD F:PRO238 4.5 74.0 1.0
CA F:GLN396 4.5 66.8 1.0
C F:GLY395 4.5 64.2 1.0
N F:CYS397 4.6 66.4 1.0
SG F:CYS397 4.7 66.4 1.0
SG F:CYS440 4.7 74.0 1.0
SG F:CYS400 4.7 67.4 1.0
CG F:PRO238 4.8 74.0 1.0
CA F:SER393 5.0 73.5 1.0

Reference:

A.A.Agip, I.Chung, A.Sanchez-Martinez, A.J.Whitworth, J.Hirst. Cryo-Em Structures of Mitochondrial Respiratory Complex I From Drosophila Melanogaster. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 36622099
DOI: 10.7554/ELIFE.84424
Page generated: Wed Apr 5 08:12:23 2023

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