Iron in PDB 8bel: Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
Enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
All present enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain):
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
(pdb code 8bel). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain), PDB code: 8bel:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 1 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe401
b:0.0
occ:1.00
|
FE
|
C:HEM401
|
0.0
|
0.0
|
1.0
|
|
NA
|
C:HEM401
|
2.0
|
1.3
|
1.0
|
|
NC
|
C:HEM401
|
2.0
|
7.3
|
1.0
|
|
NB
|
C:HEM401
|
2.1
|
13.6
|
1.0
|
|
ND
|
C:HEM401
|
2.1
|
8.4
|
1.0
|
|
NE2
|
C:HIS203
|
2.1
|
3.2
|
1.0
|
|
NE2
|
C:HIS102
|
2.6
|
5.5
|
1.0
|
|
CD2
|
C:HIS203
|
2.8
|
0.0
|
1.0
|
|
C1A
|
C:HEM401
|
3.0
|
3.1
|
1.0
|
|
C4C
|
C:HEM401
|
3.1
|
0.0
|
1.0
|
|
C1C
|
C:HEM401
|
3.1
|
0.0
|
1.0
|
|
C4A
|
C:HEM401
|
3.1
|
0.4
|
1.0
|
|
C4B
|
C:HEM401
|
3.1
|
0.0
|
1.0
|
|
C1D
|
C:HEM401
|
3.1
|
0.0
|
1.0
|
|
C4D
|
C:HEM401
|
3.1
|
1.9
|
1.0
|
|
C1B
|
C:HEM401
|
3.1
|
0.0
|
1.0
|
|
CD2
|
C:HIS102
|
3.1
|
0.0
|
1.0
|
|
CE1
|
C:HIS203
|
3.2
|
0.0
|
1.0
|
|
CHD
|
C:HEM401
|
3.4
|
0.1
|
1.0
|
|
CHC
|
C:HEM401
|
3.4
|
0.0
|
1.0
|
|
CHB
|
C:HEM401
|
3.4
|
0.0
|
1.0
|
|
CHA
|
C:HEM401
|
3.4
|
0.0
|
1.0
|
|
CE1
|
C:HIS102
|
3.8
|
0.0
|
1.0
|
|
CG
|
C:HIS203
|
4.0
|
0.0
|
1.0
|
|
O
|
C:HOH626
|
4.1
|
9.1
|
1.0
|
|
ND1
|
C:HIS203
|
4.2
|
2.1
|
1.0
|
|
C2A
|
C:HEM401
|
4.3
|
0.0
|
1.0
|
|
C3A
|
C:HEM401
|
4.3
|
3.2
|
1.0
|
|
C2C
|
C:HEM401
|
4.3
|
0.0
|
1.0
|
|
C3C
|
C:HEM401
|
4.3
|
0.0
|
1.0
|
|
C2D
|
C:HEM401
|
4.3
|
1.8
|
1.0
|
|
C3D
|
C:HEM401
|
4.3
|
0.0
|
1.0
|
|
C3B
|
C:HEM401
|
4.3
|
0.9
|
1.0
|
|
C2B
|
C:HEM401
|
4.3
|
0.9
|
1.0
|
|
CG
|
C:HIS102
|
4.4
|
0.0
|
1.0
|
|
O
|
C:HOH654
|
4.6
|
12.3
|
1.0
|
|
ND1
|
C:HIS102
|
4.7
|
0.0
|
1.0
|
|
O
|
C:HOH586
|
4.9
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 2 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe402
b:0.0
occ:1.00
|
FE
|
C:HEM402
|
0.0
|
0.0
|
1.0
|
|
ND
|
C:HEM402
|
1.9
|
0.0
|
1.0
|
|
NA
|
C:HEM402
|
2.0
|
6.0
|
1.0
|
|
NE2
|
C:HIS88
|
2.1
|
0.0
|
1.0
|
|
NE2
|
C:HIS189
|
2.1
|
0.0
|
1.0
|
|
NB
|
C:HEM402
|
2.1
|
5.4
|
1.0
|
|
NC
|
C:HEM402
|
2.1
|
5.0
|
1.0
|
|
C1D
|
C:HEM402
|
2.9
|
1.1
|
1.0
|
|
C4D
|
C:HEM402
|
2.9
|
0.0
|
1.0
|
|
C1A
|
C:HEM402
|
3.0
|
0.0
|
1.0
|
|
C4A
|
C:HEM402
|
3.0
|
0.0
|
1.0
|
|
CE1
|
C:HIS88
|
3.0
|
0.0
|
1.0
|
|
C4C
|
C:HEM402
|
3.0
|
0.0
|
1.0
|
|
C1B
|
C:HEM402
|
3.1
|
0.0
|
1.0
|
|
CD2
|
C:HIS88
|
3.1
|
0.0
|
1.0
|
|
CE1
|
C:HIS189
|
3.1
|
0.0
|
1.0
|
|
CD2
|
C:HIS189
|
3.1
|
0.0
|
1.0
|
|
C4B
|
C:HEM402
|
3.1
|
0.0
|
1.0
|
|
C1C
|
C:HEM402
|
3.2
|
0.0
|
1.0
|
|
CHD
|
C:HEM402
|
3.3
|
0.0
|
1.0
|
|
CHB
|
C:HEM402
|
3.4
|
0.0
|
1.0
|
|
CHA
|
C:HEM402
|
3.4
|
0.0
|
1.0
|
|
CHC
|
C:HEM402
|
3.5
|
0.0
|
1.0
|
|
ND1
|
C:HIS88
|
4.1
|
0.0
|
1.0
|
|
C2D
|
C:HEM402
|
4.2
|
0.0
|
1.0
|
|
ND1
|
C:HIS189
|
4.2
|
0.0
|
1.0
|
|
C3D
|
C:HEM402
|
4.2
|
0.0
|
1.0
|
|
CG
|
C:HIS88
|
4.2
|
0.0
|
1.0
|
|
C2A
|
C:HEM402
|
4.2
|
0.0
|
1.0
|
|
C3A
|
C:HEM402
|
4.2
|
4.7
|
1.0
|
|
CG
|
C:HIS189
|
4.2
|
2.1
|
1.0
|
|
C2B
|
C:HEM402
|
4.3
|
0.0
|
1.0
|
|
C3C
|
C:HEM402
|
4.3
|
1.0
|
1.0
|
|
C3B
|
C:HEM402
|
4.3
|
0.0
|
1.0
|
|
C2C
|
C:HEM402
|
4.3
|
0.0
|
1.0
|
|
CA
|
C:GLY137
|
4.9
|
0.0
|
1.0
|
|
NE2
|
C:GLN49
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 3 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:32.6
occ:1.00
|
FE1
|
D:FES301
|
0.0
|
32.6
|
1.0
|
|
S2
|
D:FES301
|
2.2
|
23.5
|
1.0
|
|
S1
|
D:FES301
|
2.2
|
21.0
|
1.0
|
|
SG
|
D:CYS234
|
2.3
|
7.8
|
1.0
|
|
SG
|
D:CYS215
|
2.3
|
9.9
|
1.0
|
|
FE2
|
D:FES301
|
2.7
|
21.1
|
1.0
|
|
CB
|
D:CYS215
|
3.0
|
1.9
|
1.0
|
|
CB
|
D:CYS234
|
3.3
|
1.9
|
1.0
|
|
CB
|
D:HIS217
|
3.8
|
0.0
|
1.0
|
|
OG
|
D:SER239
|
4.0
|
18.1
|
1.0
|
|
CB
|
D:SER239
|
4.1
|
3.9
|
1.0
|
|
ND1
|
D:HIS217
|
4.2
|
2.1
|
1.0
|
|
CB
|
D:CYS220
|
4.3
|
8.0
|
1.0
|
|
CB
|
D:CYS236
|
4.4
|
7.1
|
1.0
|
|
CG
|
D:HIS217
|
4.5
|
4.7
|
1.0
|
|
CA
|
D:CYS215
|
4.5
|
7.8
|
1.0
|
|
N
|
D:HIS237
|
4.6
|
1.9
|
1.0
|
|
N
|
D:LEU218
|
4.6
|
0.0
|
1.0
|
|
ND1
|
D:HIS237
|
4.7
|
4.2
|
1.0
|
|
CA
|
D:CYS234
|
4.7
|
4.2
|
1.0
|
|
N
|
D:CYS220
|
4.8
|
7.3
|
1.0
|
|
CA
|
D:HIS217
|
4.9
|
2.4
|
1.0
|
|
N
|
D:HIS217
|
4.9
|
5.7
|
1.0
|
|
N
|
D:SER239
|
4.9
|
10.3
|
1.0
|
|
OH
|
D:TYR241
|
4.9
|
11.6
|
1.0
|
|
CA
|
D:CYS220
|
5.0
|
9.7
|
1.0
|
|
Iron binding site 4 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 4 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:21.1
occ:1.00
|
FE2
|
D:FES301
|
0.0
|
21.1
|
1.0
|
|
ND1
|
D:HIS217
|
2.1
|
2.1
|
1.0
|
|
ND1
|
D:HIS237
|
2.2
|
4.2
|
1.0
|
|
S1
|
D:FES301
|
2.2
|
21.0
|
1.0
|
|
S2
|
D:FES301
|
2.2
|
23.5
|
1.0
|
|
FE1
|
D:FES301
|
2.7
|
32.6
|
1.0
|
|
CG
|
D:HIS237
|
3.1
|
5.3
|
1.0
|
|
CE1
|
D:HIS217
|
3.1
|
0.0
|
1.0
|
|
CG
|
D:HIS217
|
3.1
|
4.7
|
1.0
|
|
CE1
|
D:HIS237
|
3.2
|
6.6
|
1.0
|
|
CB
|
D:HIS237
|
3.3
|
1.2
|
1.0
|
|
CB
|
D:HIS217
|
3.5
|
0.0
|
1.0
|
|
N
|
D:HIS237
|
3.6
|
1.9
|
1.0
|
|
CB
|
D:CYS236
|
3.8
|
7.1
|
1.0
|
|
CA
|
D:HIS237
|
4.0
|
5.4
|
1.0
|
|
CB
|
D:LEU218
|
4.2
|
2.7
|
1.0
|
|
N
|
D:LEU218
|
4.2
|
0.0
|
1.0
|
|
NE2
|
D:HIS217
|
4.2
|
2.1
|
1.0
|
|
CD2
|
D:HIS237
|
4.2
|
8.3
|
1.0
|
|
CD2
|
D:HIS217
|
4.3
|
0.9
|
1.0
|
|
NE2
|
D:HIS237
|
4.3
|
7.7
|
1.0
|
|
SG
|
D:CYS234
|
4.3
|
7.8
|
1.0
|
|
C
|
D:CYS236
|
4.4
|
6.9
|
1.0
|
|
CD1
|
D:LEU218
|
4.6
|
0.0
|
1.0
|
|
CG
|
D:PRO251
|
4.6
|
7.9
|
1.0
|
|
CG
|
D:LEU218
|
4.6
|
4.5
|
1.0
|
|
SG
|
D:CYS215
|
4.6
|
9.9
|
1.0
|
|
CA
|
D:CYS236
|
4.7
|
11.9
|
1.0
|
|
CA
|
D:HIS217
|
4.7
|
2.4
|
1.0
|
|
C
|
D:HIS217
|
4.7
|
2.5
|
1.0
|
|
CA
|
D:LEU218
|
4.8
|
7.5
|
1.0
|
|
C
|
D:HIS237
|
4.8
|
6.2
|
1.0
|
|
OG
|
D:SER239
|
4.9
|
18.1
|
1.0
|
|
Iron binding site 5 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 5 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe400
b:10.4
occ:1.00
|
FE
|
E:HEM400
|
0.0
|
10.4
|
1.0
|
|
NE2
|
E:HIS107
|
1.8
|
0.0
|
1.0
|
|
NB
|
E:HEM400
|
2.0
|
3.3
|
1.0
|
|
ND
|
E:HEM400
|
2.0
|
0.0
|
1.0
|
|
NC
|
E:HEM400
|
2.1
|
0.0
|
1.0
|
|
NA
|
E:HEM400
|
2.1
|
0.0
|
1.0
|
|
SD
|
E:MET226
|
2.7
|
0.0
|
1.0
|
|
CD2
|
E:HIS107
|
2.8
|
0.0
|
1.0
|
|
CE1
|
E:HIS107
|
2.8
|
0.0
|
1.0
|
|
C4B
|
E:HEM400
|
3.0
|
0.0
|
1.0
|
|
C1B
|
E:HEM400
|
3.0
|
0.0
|
1.0
|
|
C4D
|
E:HEM400
|
3.0
|
0.0
|
1.0
|
|
C1D
|
E:HEM400
|
3.0
|
0.0
|
1.0
|
|
C4C
|
E:HEM400
|
3.1
|
0.0
|
1.0
|
|
C1A
|
E:HEM400
|
3.1
|
0.0
|
1.0
|
|
C1C
|
E:HEM400
|
3.1
|
0.0
|
1.0
|
|
C4A
|
E:HEM400
|
3.1
|
0.0
|
1.0
|
|
CHD
|
E:HEM400
|
3.4
|
0.0
|
1.0
|
|
CHA
|
E:HEM400
|
3.4
|
0.0
|
1.0
|
|
CHB
|
E:HEM400
|
3.4
|
0.0
|
1.0
|
|
CHC
|
E:HEM400
|
3.4
|
0.0
|
1.0
|
|
CE
|
E:MET226
|
3.8
|
0.0
|
1.0
|
|
ND1
|
E:HIS107
|
3.9
|
4.7
|
1.0
|
|
CG
|
E:HIS107
|
3.9
|
3.9
|
1.0
|
|
CG
|
E:MET226
|
4.0
|
1.1
|
1.0
|
|
C2B
|
E:HEM400
|
4.3
|
0.0
|
1.0
|
|
C3B
|
E:HEM400
|
4.3
|
0.0
|
1.0
|
|
C3D
|
E:HEM400
|
4.3
|
1.3
|
1.0
|
|
C2D
|
E:HEM400
|
4.3
|
7.2
|
1.0
|
|
C2A
|
E:HEM400
|
4.3
|
0.0
|
1.0
|
|
C3A
|
E:HEM400
|
4.3
|
3.5
|
1.0
|
|
C2C
|
E:HEM400
|
4.3
|
3.0
|
1.0
|
|
C3C
|
E:HEM400
|
4.3
|
1.3
|
1.0
|
|
CB
|
E:MET226
|
4.6
|
2.4
|
1.0
|
|
CB
|
E:PRO176
|
4.8
|
0.0
|
1.0
|
|
Iron binding site 6 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 6 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe401
b:50.1
occ:1.00
|
FE
|
M:HEM401
|
0.0
|
50.1
|
1.0
|
|
ND
|
M:HEM401
|
1.9
|
0.0
|
1.0
|
|
NA
|
M:HEM401
|
2.0
|
0.0
|
1.0
|
|
NB
|
M:HEM401
|
2.1
|
0.0
|
1.0
|
|
NC
|
M:HEM401
|
2.1
|
1.5
|
1.0
|
|
NE2
|
M:HIS102
|
2.2
|
0.0
|
1.0
|
|
NE2
|
M:HIS203
|
2.4
|
0.0
|
1.0
|
|
C4D
|
M:HEM401
|
2.9
|
0.7
|
1.0
|
|
C1D
|
M:HEM401
|
2.9
|
0.0
|
1.0
|
|
CD2
|
M:HIS102
|
2.9
|
0.0
|
1.0
|
|
C1A
|
M:HEM401
|
3.0
|
0.0
|
1.0
|
|
C4A
|
M:HEM401
|
3.0
|
0.0
|
1.0
|
|
C1B
|
M:HEM401
|
3.0
|
0.0
|
1.0
|
|
C4C
|
M:HEM401
|
3.1
|
0.0
|
1.0
|
|
CD2
|
M:HIS203
|
3.1
|
0.0
|
1.0
|
|
C4B
|
M:HEM401
|
3.1
|
0.0
|
1.0
|
|
C1C
|
M:HEM401
|
3.1
|
0.0
|
1.0
|
|
CHA
|
M:HEM401
|
3.3
|
0.0
|
1.0
|
|
CHD
|
M:HEM401
|
3.4
|
0.0
|
1.0
|
|
CE1
|
M:HIS102
|
3.4
|
3.4
|
1.0
|
|
CHB
|
M:HEM401
|
3.4
|
0.8
|
1.0
|
|
CHC
|
M:HEM401
|
3.5
|
0.0
|
1.0
|
|
CE1
|
M:HIS203
|
3.6
|
1.5
|
1.0
|
|
C2A
|
M:HEM401
|
4.1
|
0.0
|
1.0
|
|
C3D
|
M:HEM401
|
4.1
|
0.0
|
1.0
|
|
C2D
|
M:HEM401
|
4.1
|
0.0
|
1.0
|
|
C3A
|
M:HEM401
|
4.2
|
0.0
|
1.0
|
|
CG
|
M:HIS102
|
4.2
|
1.8
|
1.0
|
|
C2B
|
M:HEM401
|
4.3
|
0.0
|
1.0
|
|
C3C
|
M:HEM401
|
4.3
|
0.0
|
1.0
|
|
C2C
|
M:HEM401
|
4.3
|
0.0
|
1.0
|
|
C3B
|
M:HEM401
|
4.3
|
0.0
|
1.0
|
|
CG
|
M:HIS203
|
4.3
|
1.4
|
1.0
|
|
ND1
|
M:HIS102
|
4.3
|
2.7
|
1.0
|
|
ND1
|
M:HIS203
|
4.6
|
0.0
|
1.0
|
|
O
|
M:HOH575
|
4.8
|
0.0
|
1.0
|
|
Iron binding site 7 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 7 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe402
b:39.7
occ:1.00
|
FE
|
M:HEM402
|
0.0
|
39.7
|
1.0
|
|
ND
|
M:HEM402
|
1.9
|
0.0
|
1.0
|
|
NA
|
M:HEM402
|
2.0
|
0.0
|
1.0
|
|
NE2
|
M:HIS88
|
2.1
|
0.0
|
1.0
|
|
NC
|
M:HEM402
|
2.1
|
0.0
|
1.0
|
|
NB
|
M:HEM402
|
2.2
|
0.0
|
1.0
|
|
NE2
|
M:HIS189
|
2.3
|
0.0
|
1.0
|
|
C4D
|
M:HEM402
|
2.9
|
0.0
|
1.0
|
|
C1D
|
M:HEM402
|
2.9
|
0.0
|
1.0
|
|
CE1
|
M:HIS88
|
3.0
|
0.0
|
1.0
|
|
C1A
|
M:HEM402
|
3.0
|
0.0
|
1.0
|
|
C4A
|
M:HEM402
|
3.0
|
0.0
|
1.0
|
|
C4C
|
M:HEM402
|
3.1
|
0.0
|
1.0
|
|
C4B
|
M:HEM402
|
3.1
|
0.2
|
1.0
|
|
C1B
|
M:HEM402
|
3.1
|
0.0
|
1.0
|
|
C1C
|
M:HEM402
|
3.1
|
5.1
|
1.0
|
|
CD2
|
M:HIS88
|
3.2
|
0.0
|
1.0
|
|
CD2
|
M:HIS189
|
3.2
|
0.0
|
1.0
|
|
CHA
|
M:HEM402
|
3.3
|
0.0
|
1.0
|
|
CE1
|
M:HIS189
|
3.4
|
0.0
|
1.0
|
|
CHD
|
M:HEM402
|
3.4
|
4.4
|
1.0
|
|
CHB
|
M:HEM402
|
3.4
|
0.0
|
1.0
|
|
CHC
|
M:HEM402
|
3.5
|
0.0
|
1.0
|
|
ND1
|
M:HIS88
|
4.1
|
2.3
|
1.0
|
|
C3D
|
M:HEM402
|
4.2
|
2.4
|
1.0
|
|
C2A
|
M:HEM402
|
4.2
|
3.3
|
1.0
|
|
C3A
|
M:HEM402
|
4.2
|
3.9
|
1.0
|
|
C2D
|
M:HEM402
|
4.2
|
7.9
|
1.0
|
|
CG
|
M:HIS88
|
4.2
|
5.9
|
1.0
|
|
C3C
|
M:HEM402
|
4.3
|
3.3
|
1.0
|
|
C2C
|
M:HEM402
|
4.3
|
3.8
|
1.0
|
|
C2B
|
M:HEM402
|
4.4
|
5.6
|
1.0
|
|
C3B
|
M:HEM402
|
4.4
|
3.0
|
1.0
|
|
CG
|
M:HIS189
|
4.4
|
0.0
|
1.0
|
|
ND1
|
M:HIS189
|
4.4
|
0.0
|
1.0
|
|
CA
|
M:GLY137
|
4.9
|
0.0
|
1.0
|
|
NE2
|
M:GLN49
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 8 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 8 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe301
b:8.0
occ:1.00
|
FE1
|
N:FES301
|
0.0
|
8.0
|
1.0
|
|
S2
|
N:FES301
|
2.2
|
11.9
|
1.0
|
|
S1
|
N:FES301
|
2.2
|
0.0
|
1.0
|
|
SG
|
N:CYS234
|
2.3
|
11.4
|
1.0
|
|
SG
|
N:CYS215
|
2.3
|
4.7
|
1.0
|
|
FE2
|
N:FES301
|
2.7
|
7.4
|
1.0
|
|
CB
|
N:CYS215
|
3.0
|
0.0
|
1.0
|
|
CB
|
N:CYS234
|
3.3
|
0.0
|
1.0
|
|
CB
|
N:HIS217
|
3.8
|
0.0
|
1.0
|
|
OG
|
N:SER239
|
4.1
|
0.0
|
1.0
|
|
ND1
|
N:HIS217
|
4.2
|
0.0
|
1.0
|
|
CB
|
N:CYS220
|
4.2
|
0.0
|
1.0
|
|
N
|
N:LEU218
|
4.4
|
3.0
|
1.0
|
|
ND1
|
N:HIS237
|
4.4
|
0.0
|
1.0
|
|
CB
|
N:SER239
|
4.4
|
1.7
|
1.0
|
|
CG
|
N:HIS217
|
4.4
|
7.0
|
1.0
|
|
CB
|
N:CYS236
|
4.5
|
3.4
|
1.0
|
|
CA
|
N:CYS215
|
4.5
|
1.8
|
1.0
|
|
N
|
N:CYS220
|
4.6
|
6.5
|
1.0
|
|
N
|
N:HIS217
|
4.7
|
6.5
|
1.0
|
|
CA
|
N:CYS234
|
4.7
|
3.8
|
1.0
|
|
CA
|
N:HIS217
|
4.7
|
5.4
|
1.0
|
|
N
|
N:HIS237
|
4.8
|
3.2
|
1.0
|
|
SG
|
N:CYS220
|
4.8
|
18.5
|
1.0
|
|
CA
|
N:CYS220
|
4.9
|
3.1
|
1.0
|
|
Iron binding site 9 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 9 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe301
b:7.4
occ:1.00
|
FE2
|
N:FES301
|
0.0
|
7.4
|
1.0
|
|
ND1
|
N:HIS237
|
1.9
|
0.0
|
1.0
|
|
ND1
|
N:HIS217
|
2.2
|
0.0
|
1.0
|
|
S1
|
N:FES301
|
2.2
|
0.0
|
1.0
|
|
S2
|
N:FES301
|
2.2
|
11.9
|
1.0
|
|
FE1
|
N:FES301
|
2.7
|
8.0
|
1.0
|
|
CG
|
N:HIS237
|
2.9
|
7.6
|
1.0
|
|
CE1
|
N:HIS237
|
2.9
|
0.0
|
1.0
|
|
CE1
|
N:HIS217
|
3.1
|
0.3
|
1.0
|
|
CB
|
N:HIS237
|
3.2
|
0.0
|
1.0
|
|
CG
|
N:HIS217
|
3.2
|
7.0
|
1.0
|
|
CB
|
N:HIS217
|
3.6
|
0.0
|
1.0
|
|
N
|
N:HIS237
|
3.8
|
3.2
|
1.0
|
|
CB
|
N:CYS236
|
3.9
|
3.4
|
1.0
|
|
CD2
|
N:HIS237
|
4.0
|
0.9
|
1.0
|
|
NE2
|
N:HIS237
|
4.0
|
0.0
|
1.0
|
|
CB
|
N:LEU218
|
4.0
|
1.9
|
1.0
|
|
CA
|
N:HIS237
|
4.1
|
0.0
|
1.0
|
|
N
|
N:LEU218
|
4.1
|
3.0
|
1.0
|
|
NE2
|
N:HIS217
|
4.2
|
0.0
|
1.0
|
|
SG
|
N:CYS234
|
4.3
|
11.4
|
1.0
|
|
CD2
|
N:HIS217
|
4.3
|
3.5
|
1.0
|
|
C
|
N:CYS236
|
4.4
|
0.0
|
1.0
|
|
CG
|
N:LEU218
|
4.4
|
0.0
|
1.0
|
|
CD1
|
N:LEU218
|
4.5
|
2.4
|
1.0
|
|
CA
|
N:LEU218
|
4.6
|
3.5
|
1.0
|
|
SG
|
N:CYS215
|
4.7
|
4.7
|
1.0
|
|
C
|
N:HIS217
|
4.7
|
4.7
|
1.0
|
|
CA
|
N:CYS236
|
4.7
|
5.2
|
1.0
|
|
CA
|
N:HIS217
|
4.8
|
5.4
|
1.0
|
|
OG
|
N:SER239
|
4.8
|
0.0
|
1.0
|
|
CG
|
N:PRO251
|
4.8
|
0.0
|
1.0
|
|
C
|
N:HIS237
|
5.0
|
1.6
|
1.0
|
|
Iron binding site 10 out
of 10 in 8bel
Go back to
Iron Binding Sites List in 8bel
Iron binding site 10 out
of 10 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ciii Membrane Domain) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe401
b:17.4
occ:1.00
|
FE
|
O:HEM401
|
0.0
|
17.4
|
1.0
|
|
ND
|
O:HEM401
|
1.9
|
3.6
|
1.0
|
|
NA
|
O:HEM401
|
2.0
|
1.4
|
1.0
|
|
NE2
|
O:HIS107
|
2.1
|
1.4
|
1.0
|
|
NC
|
O:HEM401
|
2.1
|
4.3
|
1.0
|
|
NB
|
O:HEM401
|
2.1
|
8.0
|
1.0
|
|
SD
|
O:MET226
|
2.6
|
7.9
|
1.0
|
|
C1D
|
O:HEM401
|
2.8
|
5.0
|
1.0
|
|
C4D
|
O:HEM401
|
2.9
|
5.5
|
1.0
|
|
C1A
|
O:HEM401
|
2.9
|
5.5
|
1.0
|
|
C4A
|
O:HEM401
|
3.0
|
1.4
|
1.0
|
|
C4C
|
O:HEM401
|
3.0
|
2.9
|
1.0
|
|
CD2
|
O:HIS107
|
3.0
|
2.5
|
1.0
|
|
C1B
|
O:HEM401
|
3.0
|
4.0
|
1.0
|
|
C4B
|
O:HEM401
|
3.0
|
3.4
|
1.0
|
|
CE1
|
O:HIS107
|
3.0
|
3.8
|
1.0
|
|
C1C
|
O:HEM401
|
3.1
|
3.8
|
1.0
|
|
CHD
|
O:HEM401
|
3.3
|
5.6
|
1.0
|
|
CHA
|
O:HEM401
|
3.3
|
4.2
|
1.0
|
|
CHB
|
O:HEM401
|
3.4
|
3.8
|
1.0
|
|
CE
|
O:MET226
|
3.4
|
6.6
|
1.0
|
|
CG
|
O:MET226
|
3.5
|
8.6
|
1.0
|
|
CHC
|
O:HEM401
|
3.5
|
4.3
|
1.0
|
|
CB
|
O:MET226
|
4.1
|
3.9
|
1.0
|
|
C2D
|
O:HEM401
|
4.1
|
9.0
|
1.0
|
|
C3D
|
O:HEM401
|
4.1
|
8.2
|
1.0
|
|
C2A
|
O:HEM401
|
4.1
|
5.7
|
1.0
|
|
C3A
|
O:HEM401
|
4.1
|
6.5
|
1.0
|
|
ND1
|
O:HIS107
|
4.1
|
7.0
|
1.0
|
|
CG
|
O:HIS107
|
4.2
|
7.0
|
1.0
|
|
C3B
|
O:HEM401
|
4.2
|
1.5
|
1.0
|
|
C3C
|
O:HEM401
|
4.2
|
7.7
|
1.0
|
|
C2B
|
O:HEM401
|
4.2
|
5.8
|
1.0
|
|
C2C
|
O:HEM401
|
4.3
|
3.5
|
1.0
|
|
Reference:
N.Klusch,
M.Dreimann,
J.Senkler,
N.Rugen,
W.Kuhlbrandt,
H.P.Braun.
Cryo-Em Structure of the Respiratory I + III 2 Supercomplex From Arabidopsis Thaliana at 2 Angstrom Resolution. Nat.Plants 2022.
ISSN: ESSN 2055-0278
PubMed: 36585502
DOI: 10.1038/S41477-022-01308-6
Page generated: Wed Apr 5 08:12:45 2023
|
