Iron in PDB 8cmo: Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.

The structure of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. also contains other interesting chemical elements:

Calcium	(Ca)	1 atom
Magnesium	(Mg)	236 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. (pdb code 8cmo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp., PDB code: 8cmo:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:83.3 occ:1.00 FE1 B:SF4802 0.0 83.3 1.0 SG B:CYS569 1.8 77.5 1.0 S4 B:SF4802 2.3 83.3 1.0 S2 B:SF4802 2.3 83.3 1.0 S3 B:SF4802 2.3 83.3 1.0 FE3 B:SF4802 2.7 83.3 1.0 FE2 B:SF4802 2.7 83.3 1.0 FE4 B:SF4802 2.7 83.3 1.0 CB B:CYS569 3.2 77.5 1.0 CZ3 B:TRP668 3.7 71.8 1.0 CA B:CYS569 3.8 77.5 1.0 S1 B:SF4802 3.9 83.3 1.0 CD1 A:ILE720 4.0 74.0 1.0 N B:CYS569 4.2 77.5 1.0 SG B:CYS560 4.2 80.8 1.0 SG A:CYS575 4.4 77.7 1.0 CG2 A:ILE720 4.4 74.0 1.0 SG A:CYS584 4.5 76.0 1.0 CH2 B:TRP668 4.5 71.8 1.0 CE3 B:TRP668 4.5 71.8 1.0 CB B:CYS560 4.6 80.8 1.0 CG1 A:ILE720 4.8 74.0 1.0

Iron binding site 2 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:83.3 occ:1.00 FE2 B:SF4802 0.0 83.3 1.0 SG A:CYS584 1.9 76.0 1.0 S3 B:SF4802 2.3 83.3 1.0 S4 B:SF4802 2.3 83.3 1.0 S1 B:SF4802 2.3 83.3 1.0 FE1 B:SF4802 2.7 83.3 1.0 FE3 B:SF4802 2.7 83.3 1.0 FE4 B:SF4802 2.7 83.3 1.0 CB A:CYS584 3.3 76.0 1.0 S2 B:SF4802 3.9 83.3 1.0 CE3 B:TRP668 4.0 71.8 1.0 SG A:CYS575 4.0 77.7 1.0 CZ3 B:TRP668 4.1 71.8 1.0 CA A:CYS584 4.2 76.0 1.0 CD1 B:ILE703 4.3 76.0 1.0 SG B:CYS560 4.3 80.8 1.0 CB A:CYS575 4.4 77.7 1.0 SG B:CYS569 4.4 77.5 1.0 N A:CYS584 4.6 76.0 1.0 CG2 B:ILE703 4.9 76.0 1.0

Iron binding site 3 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:83.3 occ:1.00 FE3 B:SF4802 0.0 83.3 1.0 SG A:CYS575 1.8 77.7 1.0 S2 B:SF4802 2.3 83.3 1.0 S4 B:SF4802 2.3 83.3 1.0 S1 B:SF4802 2.3 83.3 1.0 FE1 B:SF4802 2.7 83.3 1.0 FE2 B:SF4802 2.7 83.3 1.0 FE4 B:SF4802 2.7 83.3 1.0 CB A:CYS575 3.1 77.7 1.0 S3 B:SF4802 3.9 83.3 1.0 SG A:CYS584 4.1 76.0 1.0 SG B:CYS560 4.3 80.8 1.0 SG B:CYS569 4.4 77.5 1.0 CA A:CYS575 4.4 77.7 1.0 N B:PRO563 4.5 81.3 1.0 CD1 A:ILE720 4.5 74.0 1.0 N A:CYS575 4.6 77.7 1.0 CD B:PRO563 4.6 81.3 1.0 C B:GLY562 4.7 81.2 1.0 CB B:PRO563 4.7 81.3 1.0 O A:GLY577 4.7 82.2 1.0 C A:GLY577 4.7 82.2 1.0 CA B:PRO563 4.8 81.3 1.0 C A:CYS575 4.9 77.7 1.0 O A:CYS575 4.9 77.7 1.0

Iron binding site 4 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:83.3 occ:1.00 FE4 B:SF4802 0.0 83.3 1.0 SG B:CYS560 1.7 80.8 1.0 S1 B:SF4802 2.3 83.3 1.0 S3 B:SF4802 2.3 83.3 1.0 S2 B:SF4802 2.3 83.3 1.0 FE2 B:SF4802 2.7 83.3 1.0 FE3 B:SF4802 2.7 83.3 1.0 FE1 B:SF4802 2.7 83.3 1.0 CB B:CYS560 3.0 80.8 1.0 S4 B:SF4802 3.9 83.3 1.0 SG B:CYS569 4.2 77.5 1.0 CA B:CYS560 4.3 80.8 1.0 SG A:CYS575 4.4 77.7 1.0 CB A:PRO578 4.4 83.1 1.0 SG A:CYS584 4.5 76.0 1.0 N B:GLY562 4.5 81.2 1.0 CA B:GLY562 4.5 81.2 1.0 N B:CYS560 4.6 80.8 1.0 C B:GLY562 4.6 81.2 1.0 CA A:PRO578 4.7 83.1 1.0 CA B:CYS569 4.7 77.5 1.0 O B:GLY562 4.7 81.2 1.0 CD1 B:ILE703 4.8 76.0 1.0 N A:PRO578 4.8 83.1 1.0 C B:CYS560 4.8 80.8 1.0 OG1 B:THR568 4.9 77.4 1.0 N B:CYS569 5.0 77.5 1.0

Iron binding site 5 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:96.4 occ:1.00 FE1 C:SF4101 0.0 96.4 1.0 SG C:CYS51 1.9 87.2 1.0 S2 C:SF4101 2.3 96.4 1.0 S3 C:SF4101 2.3 96.4 1.0 S4 C:SF4101 2.3 96.4 1.0 FE3 C:SF4101 2.7 96.4 1.0 FE4 C:SF4101 2.7 96.4 1.0 FE2 C:SF4101 2.7 96.4 1.0 CD C:PRO22 3.5 91.2 1.0 CB C:CYS51 3.5 87.2 1.0 N C:CYS51 3.7 87.2 1.0 N C:LYS52 3.8 84.6 1.0 S1 C:SF4101 3.9 96.4 1.0 CG C:PRO22 4.0 91.2 1.0 CA C:CYS51 4.0 87.2 1.0 N C:ARG53 4.2 86.5 1.0 C C:CYS51 4.3 87.2 1.0 CG2 C:VAL49 4.3 87.9 1.0 N C:GLY50 4.6 86.7 1.0 C C:GLY50 4.7 86.7 1.0 CA C:LYS52 4.7 84.6 1.0 CB C:ARG53 4.7 86.5 1.0 SG C:CYS48 4.8 91.6 1.0 SG C:CYS21 4.8 93.3 1.0 N C:VAL49 4.9 87.9 1.0 N C:PRO22 4.9 91.2 1.0 C C:LYS52 5.0 84.6 1.0 CG C:ARG53 5.0 86.5 1.0 SG C:CYS54 5.0 90.2 1.0

Iron binding site 6 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:96.4 occ:1.00 FE2 C:SF4101 0.0 96.4 1.0 S1 C:SF4101 2.3 96.4 1.0 S3 C:SF4101 2.3 96.4 1.0 S4 C:SF4101 2.3 96.4 1.0 SG C:CYS21 2.5 93.3 1.0 FE3 C:SF4101 2.7 96.4 1.0 FE1 C:SF4101 2.7 96.4 1.0 FE4 C:SF4101 2.7 96.4 1.0 CB C:CYS21 3.2 93.3 1.0 CA C:CYS21 3.6 93.3 1.0 CD C:PRO22 3.7 91.2 1.0 S2 C:SF4101 3.9 96.4 1.0 CB C:VAL25 4.1 94.0 1.0 CG2 C:VAL25 4.3 94.0 1.0 N C:PRO22 4.3 91.2 1.0 C C:CYS21 4.4 93.3 1.0 SG C:CYS51 4.4 87.2 1.0 CG C:LEU26 4.6 93.0 1.0 CD1 C:LEU26 4.6 93.0 1.0 N C:CYS21 4.8 93.3 1.0 CG C:PRO22 4.8 91.2 1.0 SG C:CYS54 4.8 90.2 1.0 CG1 C:VAL25 4.8 94.0 1.0 N C:VAL25 4.9 94.0 1.0 N C:LEU23 5.0 93.1 1.0

Iron binding site 7 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:96.4 occ:1.00 FE3 C:SF4101 0.0 96.4 1.0 S4 C:SF4101 2.3 96.4 1.0 S2 C:SF4101 2.3 96.4 1.0 S1 C:SF4101 2.3 96.4 1.0 SG C:CYS54 2.6 90.2 1.0 FE1 C:SF4101 2.7 96.4 1.0 FE2 C:SF4101 2.7 96.4 1.0 FE4 C:SF4101 2.7 96.4 1.0 CG2 C:VAL67 3.6 87.6 1.0 CB C:CYS54 3.7 90.2 1.0 S3 C:SF4101 3.9 96.4 1.0 N C:CYS54 4.1 90.2 1.0 SG C:CYS51 4.3 87.2 1.0 N C:LYS52 4.3 84.6 1.0 CA C:LYS52 4.4 84.6 1.0 N C:ARG53 4.5 86.5 1.0 CA C:CYS54 4.6 90.2 1.0 SG C:CYS48 4.6 91.6 1.0 CD1 C:LEU26 4.7 93.0 1.0 C C:LYS52 4.8 84.6 1.0 CB C:VAL67 4.8 87.6 1.0 CG2 C:VAL5 4.9 91.3 1.0 CG1 C:VAL67 4.9 87.6 1.0

Iron binding site 8 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:96.4 occ:1.00 FE4 C:SF4101 0.0 96.4 1.0 S3 C:SF4101 2.3 96.4 1.0 S2 C:SF4101 2.3 96.4 1.0 S1 C:SF4101 2.3 96.4 1.0 SG C:CYS48 2.4 91.6 1.0 FE1 C:SF4101 2.7 96.4 1.0 FE3 C:SF4101 2.7 96.4 1.0 FE2 C:SF4101 2.7 96.4 1.0 CB C:CYS48 3.3 91.6 1.0 CA C:CYS48 3.6 91.6 1.0 S4 C:SF4101 3.9 96.4 1.0 N C:VAL49 3.9 87.9 1.0 N C:GLY50 4.1 86.7 1.0 C C:CYS48 4.2 91.6 1.0 CG2 C:VAL5 4.4 91.3 1.0 CG2 C:VAL25 4.4 94.0 1.0 SG C:CYS51 4.5 87.2 1.0 CB C:VAL25 4.5 94.0 1.0 CG1 C:VAL25 4.6 94.0 1.0 CG2 C:VAL67 4.7 87.6 1.0 CA C:GLY50 4.7 86.7 1.0 CG1 C:VAL67 4.8 87.6 1.0 SG C:CYS21 4.8 93.3 1.0 N C:CYS48 4.8 91.6 1.0 N C:CYS51 4.8 87.2 1.0

Iron binding site 9 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:101.0 occ:1.00 FE1 C:SF4102 0.0 101.0 1.0 S4 C:SF4102 2.3 101.0 1.0 S2 C:SF4102 2.3 101.0 1.0 S3 C:SF4102 2.3 101.0 1.0 FE3 C:SF4102 2.7 101.0 1.0 FE2 C:SF4102 2.7 101.0 1.0 FE4 C:SF4102 2.7 101.0 1.0 SG C:CYS58 3.0 92.0 1.0 CB C:CYS58 3.7 92.0 1.0 CB C:SER64 3.8 92.2 1.0 S1 C:SF4102 3.9 101.0 1.0 CA C:CYS58 4.0 92.0 1.0 CD C:PRO59 4.1 91.7 1.0 SG C:CYS14 4.2 96.7 1.0 CG1 C:VAL65 4.3 89.2 1.0 OG C:SER64 4.4 92.2 1.0 N C:VAL65 4.5 89.2 1.0 SG C:CYS17 4.6 94.8 1.0 CG2 C:THR60 4.6 92.1 1.0 SG C:CYS11 4.6 96.4 1.0 OG1 C:THR60 4.8 92.1 1.0 CA C:SER64 4.8 92.2 1.0 C C:CYS58 4.8 92.0 1.0 N C:PRO59 4.8 91.7 1.0 N C:SER64 4.9 92.2 1.0 CB C:CYS17 4.9 94.8 1.0 CB C:VAL65 4.9 89.2 1.0 CA C:CYS11 5.0 96.4 1.0 C C:SER64 5.0 92.2 1.0

Iron binding site 10 out of 12 in the Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:101.0 occ:1.00 FE2 C:SF4102 0.0 101.0 1.0 SG C:CYS17 2.0 94.8 1.0 S3 C:SF4102 2.3 101.0 1.0 S4 C:SF4102 2.3 101.0 1.0 S1 C:SF4102 2.3 101.0 1.0 FE1 C:SF4102 2.7 101.0 1.0 FE3 C:SF4102 2.7 101.0 1.0 FE4 C:SF4102 2.7 101.0 1.0 CB C:CYS17 3.0 94.8 1.0 S2 C:SF4102 3.9 101.0 1.0 N C:CYS17 3.9 94.8 1.0 CB C:ALA40 4.0 93.9 1.0 CA C:CYS17 4.1 94.8 1.0 SG C:CYS14 4.1 96.7 1.0 SG C:CYS11 4.6 96.4 1.0 CG1 C:VAL65 4.7 89.2 1.0 N C:THR15 4.8 94.7 1.0 N C:VAL18 4.9 93.1 1.0 N C:GLN16 4.9 94.5 1.0 CB C:VAL65 4.9 89.2 1.0 C C:CYS17 5.0 94.8 1.0

M.Fadeeva, D.Klaiman, N.Nelson. Cryo-Em Structure of the Photosystem I - Lhci Supercomplex From Coelastrella Sp. To Be Published.