Iron in PDB 8crs: Cryoem Structure of Nitrogenase Mofe-Protein in Detergent

All present enzymatic activity of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent:
1.18.6.1;

The structure of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent also contains other interesting chemical elements:

Molybdenum

(Mo)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent (pdb code 8crs). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent, PDB code: 8crs:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:42.1 occ:1.00 FE1 A:ICS501 0.0 42.1 1.0 SG A:CYS275 2.1 26.6 1.0 S2A A:ICS501 2.3 20.0 1.0 S4A A:ICS501 2.3 26.0 1.0 S1A A:ICS501 2.3 23.2 1.0 FE4 A:ICS501 2.7 43.4 1.0 FE3 A:ICS501 2.7 37.4 1.0 FE2 A:ICS501 2.7 37.7 1.0 CB A:CYS275 3.2 13.8 1.0 CX A:ICS501 3.5 22.3 1.0 OG A:SER278 4.0 26.6 1.0 CB A:LEU358 4.0 15.5 1.0 CB A:SER278 4.4 19.4 1.0 CA A:CYS275 4.4 27.3 1.0 CE2 A:TYR229 4.5 18.9 1.0 CD2 A:LEU358 4.7 25.1 1.0 N A:LEU358 4.7 24.3 1.0 S3A A:ICS501 4.8 24.9 1.0 S2B A:ICS501 4.8 23.5 1.0 S5A A:ICS501 4.8 23.8 1.0 N A:SER278 4.9 23.2 1.0 CG A:LEU358 5.0 30.2 1.0 CD2 A:TYR229 5.0 14.3 1.0

Iron binding site 2 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:37.7 occ:1.00 FE2 A:ICS501 0.0 37.7 1.0 CX A:ICS501 2.0 22.3 1.0 S2B A:ICS501 2.2 23.5 1.0 S2A A:ICS501 2.2 20.0 1.0 S1A A:ICS501 2.3 23.2 1.0 FE6 A:ICS501 2.6 34.4 1.0 FE4 A:ICS501 2.7 43.4 1.0 FE3 A:ICS501 2.7 37.4 1.0 FE1 A:ICS501 2.7 42.1 1.0 FE5 A:ICS501 3.7 38.9 1.0 FE7 A:ICS501 3.7 34.3 1.0 S4A A:ICS501 3.9 26.0 1.0 CE1 A:HIS195 3.9 23.5 1.0 NE2 A:HIS195 4.0 19.8 1.0 CZ A:PHE381 4.1 17.3 1.0 S1B A:ICS501 4.2 21.1 1.0 S3B A:ICS501 4.2 19.7 1.0 CE1 A:PHE381 4.4 18.7 1.0 SG A:CYS275 4.5 26.6 1.0 CG1 A:VAL70 4.5 16.1 1.0 S3A A:ICS501 4.5 24.9 1.0 S5A A:ICS501 4.5 23.8 1.0 N A:GLY357 4.8 23.6 1.0 CG2 A:VAL70 4.9 21.3 1.0 CB A:SER278 5.0 19.4 1.0

Iron binding site 3 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:37.4 occ:1.00 FE3 A:ICS501 0.0 37.4 1.0 CX A:ICS501 2.0 22.3 1.0 S5A A:ICS501 2.2 23.8 1.0 S4A A:ICS501 2.3 26.0 1.0 S2A A:ICS501 2.3 20.0 1.0 FE7 A:ICS501 2.6 34.3 1.0 FE4 A:ICS501 2.6 43.4 1.0 FE2 A:ICS501 2.7 37.7 1.0 FE1 A:ICS501 2.7 42.1 1.0 FE6 A:ICS501 3.7 34.4 1.0 FE5 A:ICS501 3.7 38.9 1.0 NH2 A:ARG96 3.9 19.8 1.0 S1A A:ICS501 3.9 23.2 1.0 O A:HOH856 4.0 24.6 1.0 CD2 A:TYR229 4.2 14.3 1.0 S4B A:ICS501 4.2 17.4 1.0 S3B A:ICS501 4.2 19.7 1.0 CE2 A:TYR229 4.4 18.9 1.0 S2B A:ICS501 4.5 23.5 1.0 S3A A:ICS501 4.5 24.9 1.0 SG A:CYS275 4.6 26.6 1.0 NE A:ARG359 4.9 27.1 1.0 CZ A:ARG96 5.0 18.1 1.0

Iron binding site 4 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:43.4 occ:1.00 FE4 A:ICS501 0.0 43.4 1.0 CX A:ICS501 2.0 22.3 1.0 S3A A:ICS501 2.2 24.9 1.0 S1A A:ICS501 2.3 23.2 1.0 S4A A:ICS501 2.3 26.0 1.0 FE5 A:ICS501 2.6 38.9 1.0 FE3 A:ICS501 2.6 37.4 1.0 FE1 A:ICS501 2.7 42.1 1.0 FE2 A:ICS501 2.7 37.7 1.0 FE7 A:ICS501 3.7 34.3 1.0 FE6 A:ICS501 3.7 34.4 1.0 N A:LEU358 3.8 24.3 1.0 S2A A:ICS501 3.8 20.0 1.0 N A:GLY357 3.9 23.6 1.0 CB A:LEU358 4.0 15.5 1.0 S4B A:ICS501 4.2 17.4 1.0 S1B A:ICS501 4.3 21.1 1.0 CA A:LEU358 4.5 24.5 1.0 N A:ARG359 4.5 26.8 1.0 S5A A:ICS501 4.5 23.8 1.0 S2B A:ICS501 4.5 23.5 1.0 SG A:CYS275 4.5 26.6 1.0 CA A:GLY357 4.6 14.6 1.0 C A:GLY357 4.6 22.3 1.0 CG A:ARG359 4.6 25.7 1.0 CD A:ARG359 4.8 24.2 1.0 NE A:ARG359 4.8 27.1 1.0 C A:GLY356 4.8 19.3 1.0 CA A:GLY356 4.9 20.6 1.0

Iron binding site 5 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:38.9 occ:1.00 FE5 A:ICS501 0.0 38.9 1.0 CX A:ICS501 2.0 22.3 1.0 S4B A:ICS501 2.3 17.4 1.0 S3A A:ICS501 2.3 24.9 1.0 S1B A:ICS501 2.3 21.1 1.0 FE4 A:ICS501 2.6 43.4 1.0 FE7 A:ICS501 2.6 34.3 1.0 FE6 A:ICS501 2.7 34.4 1.0 MO1 A:ICS501 2.7 36.8 1.0 FE2 A:ICS501 3.7 37.7 1.0 FE3 A:ICS501 3.7 37.4 1.0 ND1 A:HIS442 3.9 28.0 1.0 S3B A:ICS501 3.9 19.7 1.0 N A:GLY356 4.0 21.4 1.0 CE1 A:HIS442 4.1 18.8 1.0 CG2 A:ILE355 4.1 20.9 1.0 CA A:GLY356 4.1 20.6 1.0 S1A A:ICS501 4.3 23.2 1.0 S4A A:ICS501 4.3 26.0 1.0 S2B A:ICS501 4.5 23.5 1.0 S5A A:ICS501 4.5 23.8 1.0 CD A:ARG359 4.5 24.2 1.0 N A:GLY357 4.6 23.6 1.0 O7 A:HCA502 4.6 29.3 1.0 NE A:ARG359 4.7 27.1 1.0 O6 A:HCA502 4.7 26.4 1.0 CG A:HIS442 4.8 8.7 1.0 C A:GLY356 4.9 19.3 1.0 CZ A:PHE381 4.9 17.3 1.0

Iron binding site 6 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:34.4 occ:1.00 FE6 A:ICS501 0.0 34.4 1.0 CX A:ICS501 2.0 22.3 1.0 S2B A:ICS501 2.2 23.5 1.0 S3B A:ICS501 2.2 19.7 1.0 S1B A:ICS501 2.2 21.1 1.0 FE2 A:ICS501 2.6 37.7 1.0 FE7 A:ICS501 2.6 34.3 1.0 FE5 A:ICS501 2.7 38.9 1.0 MO1 A:ICS501 2.7 36.8 1.0 FE3 A:ICS501 3.7 37.4 1.0 O7 A:HCA502 3.7 29.3 1.0 FE4 A:ICS501 3.7 43.4 1.0 S4B A:ICS501 3.8 17.4 1.0 CZ A:PHE381 4.0 17.3 1.0 O2 A:HCA502 4.1 33.0 1.0 S2A A:ICS501 4.2 20.0 1.0 S1A A:ICS501 4.3 23.2 1.0 CG2 A:VAL70 4.3 21.3 1.0 S5A A:ICS501 4.5 23.8 1.0 O6 A:HCA502 4.5 26.4 1.0 S3A A:ICS501 4.5 24.9 1.0 CE2 A:PHE381 4.6 21.6 1.0 ND1 A:HIS442 4.7 28.0 1.0 C3 A:HCA502 4.8 23.6 1.0 C1 A:HCA502 4.9 32.2 1.0 C7 A:HCA502 5.0 20.1 1.0

Iron binding site 7 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:34.3 occ:1.00 FE7 A:ICS501 0.0 34.3 1.0 CX A:ICS501 2.0 22.3 1.0 S5A A:ICS501 2.2 23.8 1.0 S4B A:ICS501 2.2 17.4 1.0 S3B A:ICS501 2.3 19.7 1.0 FE3 A:ICS501 2.6 37.4 1.0 FE6 A:ICS501 2.6 34.4 1.0 FE5 A:ICS501 2.6 38.9 1.0 MO1 A:ICS501 2.7 36.8 1.0 O A:HOH688 3.5 16.9 1.0 FE4 A:ICS501 3.7 43.4 1.0 O6 A:HCA502 3.7 26.4 1.0 FE2 A:ICS501 3.7 37.7 1.0 S1B A:ICS501 3.8 21.1 1.0 NE A:ARG96 4.0 23.4 1.0 NH2 A:ARG96 4.0 19.8 1.0 S4A A:ICS501 4.3 26.0 1.0 S2A A:ICS501 4.3 20.0 1.0 S2B A:ICS501 4.4 23.5 1.0 CZ A:ARG96 4.5 18.1 1.0 S3A A:ICS501 4.5 24.9 1.0 O7 A:HCA502 4.6 29.3 1.0 CZ A:ARG359 4.6 24.4 1.0 C7 A:HCA502 4.6 20.1 1.0 NH2 A:ARG359 4.7 31.4 1.0 ND1 A:HIS442 4.7 28.0 1.0 NE A:ARG359 4.8 27.1 1.0 NH1 A:ARG359 4.9 14.5 1.0

Iron binding site 8 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:37.9 occ:1.00 FE1 B:CLF601 0.0 37.9 1.0 SG A:CYS154 2.3 21.6 1.0 S3A B:CLF601 2.3 24.2 1.0 S2A B:CLF601 2.3 17.4 1.0 S1 B:CLF601 2.4 17.5 1.0 FE2 B:CLF601 2.5 41.6 1.0 FE4 B:CLF601 2.6 38.5 1.0 FE3 B:CLF601 2.8 35.5 1.0 CB A:CYS154 3.2 15.0 1.0 O B:HOH1014 3.6 21.3 1.0 CA A:GLY185 3.8 16.3 1.0 N A:CYS154 3.8 18.7 1.0 S4A B:CLF601 3.8 16.8 1.0 N A:GLY185 4.0 18.3 1.0 SG B:CYS95 4.0 31.8 1.0 CA A:CYS154 4.0 17.9 1.0 FE8 B:CLF601 4.4 33.7 1.0 CB B:SER92 4.4 25.1 1.0 SG A:CYS88 4.5 22.3 1.0 C A:GLY185 4.6 24.4 1.0 FE5 B:CLF601 4.6 35.9 1.0 OG B:SER92 4.7 30.7 1.0 SG A:CYS62 4.9 19.5 1.0 FE6 B:CLF601 4.9 44.3 1.0 SG B:CYS153 4.9 33.0 1.0 N A:PHE186 4.9 24.6 1.0 C A:GLU153 4.9 20.9 1.0

Iron binding site 9 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:41.6 occ:1.00 FE2 B:CLF601 0.0 41.6 1.0 SG B:CYS95 2.3 31.8 1.0 S4A B:CLF601 2.3 16.8 1.0 S2A B:CLF601 2.3 17.4 1.0 S1 B:CLF601 2.5 17.5 1.0 FE1 B:CLF601 2.5 37.9 1.0 FE4 B:CLF601 2.6 38.5 1.0 FE3 B:CLF601 2.8 35.5 1.0 FE8 B:CLF601 3.0 33.7 1.0 N B:CYS95 3.1 21.1 1.0 CB B:CYS95 3.4 14.0 1.0 CA B:CYS95 3.5 16.6 1.0 S3A B:CLF601 3.8 24.2 1.0 FE5 B:CLF601 3.8 35.9 1.0 C B:GLY94 3.8 17.7 1.0 S4B B:CLF601 3.9 16.7 1.0 O B:HOH1014 4.2 21.3 1.0 CA B:GLY94 4.3 7.2 1.0 SG A:CYS88 4.4 22.3 1.0 SG A:CYS154 4.5 21.6 1.0 O B:GLY94 4.5 30.4 1.0 CB B:SER92 4.6 25.1 1.0 FE6 B:CLF601 4.6 44.3 1.0 SG A:CYS62 4.7 19.5 1.0 N B:GLY94 4.8 23.7 1.0 O B:SER92 5.0 32.6 1.0 C B:CYS95 5.0 19.1 1.0

Iron binding site 10 out of 32 in the Cryoem Structure of Nitrogenase Mofe-Protein in Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Structure of Nitrogenase Mofe-Protein in Detergent within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:35.5 occ:1.00 FE3 B:CLF601 0.0 35.5 1.0 SG A:CYS62 2.3 19.5 1.0 S4A B:CLF601 2.3 16.8 1.0 S2A B:CLF601 2.3 17.4 1.0 S3A B:CLF601 2.3 24.2 1.0 FE4 B:CLF601 2.7 38.5 1.0 FE2 B:CLF601 2.8 41.6 1.0 FE1 B:CLF601 2.8 37.9 1.0 CB A:CYS62 3.3 3.9 1.0 CA A:GLY185 3.8 16.3 1.0 CB A:TYR64 3.9 14.1 1.0 S1 B:CLF601 4.2 17.5 1.0 CA B:GLY94 4.3 7.2 1.0 N A:GLY185 4.4 18.3 1.0 C B:GLY94 4.5 17.7 1.0 CD1 A:TYR64 4.5 18.7 1.0 CG A:TYR64 4.5 15.8 1.0 N B:CYS95 4.6 21.1 1.0 O B:HOH1022 4.7 26.1 1.0 CA A:CYS62 4.7 17.5 1.0 SG A:CYS154 4.8 21.6 1.0 N A:TYR64 4.8 21.4 1.0 SG A:CYS88 4.8 22.3 1.0 C A:GLY185 4.9 24.4 1.0 CA A:TYR64 4.9 15.1 1.0 SG B:CYS95 4.9 31.8 1.0 CE2 B:TYR98 4.9 17.7 1.0

R.A.Warmack, A.O.Maggiolo, A.Orta, B.B.Wenke, J.B.Howard, D.C.Rees. Structural Consequences of Turnover-Induced Homocitrate Loss in Nitrogenase. Nat Commun V. 14 1091 2023.
ISSN: ESSN 2041-1723
PubMed: 36841829
DOI: 10.1038/S41467-023-36636-4