Atomistry » Iron » PDB 8csq-8djr » 8csq
Atomistry »
  Iron »
    PDB 8csq-8djr »
      8csq »

Iron in PDB 8csq: Human Mitochondrial Small Subunit Assembly Intermediate (State B)

Enzymatic activity of Human Mitochondrial Small Subunit Assembly Intermediate (State B)

All present enzymatic activity of Human Mitochondrial Small Subunit Assembly Intermediate (State B):
2.3.1.39;

Other elements in 8csq:

The structure of Human Mitochondrial Small Subunit Assembly Intermediate (State B) also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Magnesium (Mg) 27 atoms
Potassium (K) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Human Mitochondrial Small Subunit Assembly Intermediate (State B) (pdb code 8csq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Human Mitochondrial Small Subunit Assembly Intermediate (State B), PDB code: 8csq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 1 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:30.6
occ:1.00
 FE1 7:SF4501 0.0 30.6 1.0
S2 7:SF4501 2.2 30.6 1.0
SG 7:CYS404 2.3 19.7 1.0
S4 7:SF4501 2.3 30.6 1.0
S3 7:SF4501 2.3 30.6 1.0
FE3 7:SF4501 2.7 30.6 1.0
FE4 7:SF4501 2.7 30.6 1.0
FE2 7:SF4501 2.8 30.6 1.0
CB 7:CYS404 3.2 19.7 1.0
S1 7:SF4501 3.9 30.6 1.0
CD 7:PRO340 4.4 18.1 1.0
NE2 7:HIS335 4.4 13.7 1.0
SG 7:CYS333 4.6 19.2 1.0
CA 7:CYS404 4.6 19.7 1.0
CG2 7:THR389 4.6 23.9 1.0
CA 7:CYS333 4.7 19.2 1.0
SG 7:CYS339 4.8 17.5 1.0
SD 7:MET410 4.8 19.5 1.0
CG 7:PRO340 4.8 18.1 1.0
SG 7:CYS347 4.8 30.6 1.0
CB 7:CYS333 4.8 19.2 1.0
CD 7:PRO334 4.8 17.0 1.0

Iron binding site 2 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 2 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:30.6
occ:1.00
 FE2 7:SF4501 0.0 30.6 1.0
S1 7:SF4501 2.2 30.6 1.0
SG 7:CYS347 2.3 30.6 1.0
S3 7:SF4501 2.3 30.6 1.0
S4 7:SF4501 2.3 30.6 1.0
FE3 7:SF4501 2.7 30.6 1.0
FE4 7:SF4501 2.7 30.6 1.0
FE1 7:SF4501 2.8 30.6 1.0
CB 7:CYS347 3.2 30.6 1.0
S2 7:SF4501 3.9 30.6 1.0
CG2 7:THR389 4.3 23.9 1.0
OE1 7:GLN341 4.5 22.4 1.0
CG 7:PRO332 4.6 22.6 1.0
CA 7:CYS347 4.6 30.6 1.0
SG 7:CYS339 4.6 17.5 1.0
NE2 7:HIS303 4.7 16.1 1.0
SG 7:CYS333 4.8 19.2 1.0
SG 7:CYS404 4.9 19.7 1.0
CZ 7:PHE349 5.0 30.6 1.0

Iron binding site 3 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 3 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:30.6
occ:1.00
 FE3 7:SF4501 0.0 30.6 1.0
S4 7:SF4501 2.2 30.6 1.0
SG 7:CYS333 2.2 19.2 1.0
S1 7:SF4501 2.3 30.6 1.0
S2 7:SF4501 2.3 30.6 1.0
FE1 7:SF4501 2.7 30.6 1.0
FE4 7:SF4501 2.7 30.6 1.0
FE2 7:SF4501 2.7 30.6 1.0
CB 7:CYS333 3.3 19.2 1.0
CA 7:CYS333 3.6 19.2 1.0
S3 7:SF4501 3.8 30.6 1.0
N 7:CYS333 3.9 19.2 1.0
CG 7:PRO332 4.3 22.6 1.0
C 7:PRO332 4.6 22.6 1.0
SG 7:CYS404 4.6 19.7 1.0
CD 7:PRO332 4.7 22.6 1.0
SG 7:CYS339 4.8 17.5 1.0
SG 7:CYS347 4.9 30.6 1.0
CE 7:MET307 5.0 21.0 1.0

Iron binding site 4 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 4 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:30.6
occ:1.00
 FE4 7:SF4501 0.0 30.6 1.0
SG 7:CYS339 2.3 17.5 1.0
S3 7:SF4501 2.3 30.6 1.0
S1 7:SF4501 2.3 30.6 1.0
S2 7:SF4501 2.3 30.6 1.0
FE3 7:SF4501 2.7 30.6 1.0
FE1 7:SF4501 2.7 30.6 1.0
FE2 7:SF4501 2.7 30.6 1.0
CB 7:CYS339 3.4 17.5 1.0
S4 7:SF4501 3.9 30.6 1.0
CA 7:CYS339 3.9 17.5 1.0
CD 7:PRO340 4.0 18.1 1.0
NE2 7:HIS303 4.1 16.1 1.0
SD 7:MET307 4.5 21.0 1.0
CB 7:CYS347 4.5 30.6 1.0
SG 7:CYS347 4.6 30.6 1.0
N 7:PRO340 4.6 18.1 1.0
SG 7:CYS333 4.6 19.2 1.0
C 7:CYS339 4.7 17.5 1.0
SG 7:CYS404 4.7 19.7 1.0
CE1 7:HIS303 4.7 16.1 1.0
OE1 7:GLN341 4.8 22.4 1.0
CB 7:GLN341 4.9 22.4 1.0
CG 7:PRO340 5.0 18.1 1.0

Iron binding site 5 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 5 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe201

b:73.6
occ:1.00
 FE1 P:FES201 0.0 73.6 1.0
S1 P:FES201 2.2 73.6 1.0
S2 P:FES201 2.2 73.6 1.0
SG P:CYS100 2.3 47.1 1.0
FE2 P:FES201 2.7 73.6 1.0
CB P:CYS100 2.8 47.1 1.0
SG P:CYS65 3.4 49.2 1.0
CG P:LYS103 3.8 41.7 1.0
CB P:CYS68 4.0 47.5 1.0
SG E:CYS105 4.1 59.4 1.0
CA P:CYS100 4.2 47.1 1.0
SG P:CYS68 4.4 47.5 1.0
N P:CYS100 4.4 47.1 1.0
CB P:CYS65 4.5 49.2 1.0
CB E:CYS105 4.8 59.4 1.0
CD P:LYS103 4.8 41.7 1.0
CB P:LYS103 4.8 41.7 1.0
NZ P:LYS64 4.9 57.6 1.0
CA P:CYS68 4.9 47.5 1.0
N P:CYS65 4.9 49.2 1.0

Iron binding site 6 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 6 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe201

b:73.6
occ:1.00
 FE2 P:FES201 0.0 73.6 1.0
S2 P:FES201 2.2 73.6 1.0
S1 P:FES201 2.2 73.6 1.0
SG E:CYS105 2.3 59.4 1.0
SG P:CYS68 2.3 47.5 1.0
CB E:CYS105 2.4 59.4 1.0
FE1 P:FES201 2.7 73.6 1.0
NZ P:LYS64 2.9 57.6 1.0
CB P:CYS68 3.1 47.5 1.0
CA E:CYS105 3.8 59.4 1.0
CE P:LYS64 3.8 57.6 1.0
C E:CYS105 4.1 59.4 1.0
CA P:CYS68 4.3 47.5 1.0
N E:CYS105 4.4 59.4 1.0
O E:CYS105 4.5 59.4 1.0
N E:GLU106 4.5 61.6 1.0
SG P:CYS100 4.7 47.1 1.0
CD P:LYS64 4.9 57.6 1.0

Iron binding site 7 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 7 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Fe201

b:51.3
occ:1.00
 FE1 T:FES201 0.0 51.3 1.0
S2 T:FES201 2.2 51.3 1.0
S1 T:FES201 2.2 51.3 1.0
SG T:CYS149 2.3 31.2 1.0
SG M:CYS26 2.3 28.1 1.0
FE2 T:FES201 2.7 51.3 1.0
CB T:CYS149 3.5 31.2 1.0
SG T:CYS141 3.6 26.9 1.0
CB M:CYS26 4.0 28.1 1.0
CA T:CYS149 4.1 31.2 1.0
N M:CYS26 4.7 28.1 1.0
C M:GLY25 4.8 24.2 1.0
CD T:PRO150 4.9 28.8 1.0
SG T:CYS139 4.9 27.8 1.0
N T:CYS149 4.9 31.2 1.0
CA M:CYS26 4.9 28.1 1.0
CB T:CYS141 5.0 26.9 1.0

Iron binding site 8 out of 8 in 8csq

Go back to Iron Binding Sites List in 8csq
Iron binding site 8 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Human Mitochondrial Small Subunit Assembly Intermediate (State B) within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Fe201

b:51.3
occ:1.00
 FE2 T:FES201 0.0 51.3 1.0
S2 T:FES201 2.2 51.3 1.0
S1 T:FES201 2.2 51.3 1.0
SG T:CYS141 2.3 26.9 1.0
SG T:CYS139 2.3 27.8 1.0
CB T:CYS139 2.6 27.8 1.0
FE1 T:FES201 2.7 51.3 1.0
CB T:CYS141 3.6 26.9 1.0
SG T:CYS149 3.9 31.2 1.0
CA T:CYS139 4.1 27.8 1.0
CA M:GLY25 4.2 24.2 1.0
SG M:CYS26 4.3 28.1 1.0
N T:CYS141 4.4 26.9 1.0
CA T:CYS141 4.6 26.9 1.0
C T:CYS139 4.7 27.8 1.0
C M:GLY25 4.8 24.2 1.0
N T:ILE140 4.9 24.2 1.0
N T:CYS139 5.0 27.8 1.0
N M:GLY25 5.0 24.2 1.0
CD M:ARG29 5.0 24.2 1.0

Reference:

N.J.Harper, C.Burnside, S.Klinge. Principles of Mitoribosomal Small Subunit Assembly in Eukaryotes. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36482135
DOI: 10.1038/S41586-022-05621-0
Page generated: Fri Aug 9 23:01:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy