Atomistry » Iron » PDB 8css-8djt » 8csu
Atomistry »
  Iron »
    PDB 8css-8djt »
      8csu »

Iron in PDB 8csu: Human Mitochondrial Small Subunit Assembly Intermediate (State C*)

Other elements in 8csu:

The structure of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) also contains other interesting chemical elements:

Potassium (K) 5 atoms
Magnesium (Mg) 26 atoms
Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*) (pdb code 8csu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*), PDB code: 8csu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 1 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:38.0
occ:1.00
 FE1 7:SF4501 0.0 38.0 1.0
S2 7:SF4501 2.2 38.0 1.0
SG 7:CYS404 2.3 48.6 1.0
S4 7:SF4501 2.3 38.0 1.0
S3 7:SF4501 2.3 38.0 1.0
FE3 7:SF4501 2.7 38.0 1.0
FE4 7:SF4501 2.7 38.0 1.0
FE2 7:SF4501 2.7 38.0 1.0
CB 7:CYS404 3.1 48.6 1.0
S1 7:SF4501 3.9 38.0 1.0
NE2 7:HIS335 4.0 45.0 1.0
CD 7:PRO340 4.2 45.9 1.0
CG 7:PRO340 4.5 45.9 1.0
SG 7:CYS333 4.6 41.2 1.0
CA 7:CYS404 4.6 48.6 1.0
SG 7:CYS339 4.6 46.8 1.0
CG2 7:THR389 4.7 42.9 1.0
CD 7:PRO334 4.7 46.3 1.0
CB 7:CYS333 4.7 41.2 1.0
CA 7:CYS333 4.7 41.2 1.0
CD2 7:HIS335 4.8 45.0 1.0
CE1 7:HIS335 4.9 45.0 1.0
SG 7:CYS347 5.0 40.0 1.0

Iron binding site 2 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 2 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:38.0
occ:1.00
 FE2 7:SF4501 0.0 38.0 1.0
S1 7:SF4501 2.2 38.0 1.0
SG 7:CYS347 2.3 40.0 1.0
S3 7:SF4501 2.3 38.0 1.0
S4 7:SF4501 2.3 38.0 1.0
FE4 7:SF4501 2.7 38.0 1.0
FE3 7:SF4501 2.7 38.0 1.0
FE1 7:SF4501 2.7 38.0 1.0
CB 7:CYS347 3.2 40.0 1.0
CG2 7:THR389 3.6 42.9 1.0
S2 7:SF4501 3.9 38.0 1.0
CB 7:THR389 4.4 42.9 1.0
CA 7:CYS347 4.6 40.0 1.0
SG 7:CYS404 4.8 48.6 1.0
SG 7:CYS339 4.8 46.8 1.0
CB 7:CYS404 4.8 48.6 1.0
CG 7:PRO332 4.8 38.6 1.0
SG 7:CYS333 4.9 41.2 1.0

Iron binding site 3 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 3 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:38.0
occ:1.00
 FE3 7:SF4501 0.0 38.0 1.0
S4 7:SF4501 2.2 38.0 1.0
SG 7:CYS333 2.3 41.2 1.0
S1 7:SF4501 2.3 38.0 1.0
S2 7:SF4501 2.3 38.0 1.0
FE1 7:SF4501 2.7 38.0 1.0
FE4 7:SF4501 2.7 38.0 1.0
FE2 7:SF4501 2.7 38.0 1.0
CB 7:CYS333 3.3 41.2 1.0
CA 7:CYS333 3.6 41.2 1.0
N 7:CYS333 3.9 41.2 1.0
S3 7:SF4501 3.9 38.0 1.0
CG 7:PRO332 4.2 38.6 1.0
CE 7:MET307 4.3 46.5 1.0
C 7:PRO332 4.5 38.6 1.0
SG 7:CYS347 4.6 40.0 1.0
CD 7:PRO332 4.7 38.6 1.0
SG 7:CYS404 4.7 48.6 1.0
SG 7:CYS339 4.8 46.8 1.0
O 7:PRO332 4.9 38.6 1.0
CB 7:PRO332 5.0 38.6 1.0

Iron binding site 4 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 4 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Fe501

b:38.0
occ:1.00
 FE4 7:SF4501 0.0 38.0 1.0
S3 7:SF4501 2.3 38.0 1.0
SG 7:CYS339 2.3 46.8 1.0
S1 7:SF4501 2.3 38.0 1.0
S2 7:SF4501 2.3 38.0 1.0
FE1 7:SF4501 2.7 38.0 1.0
FE2 7:SF4501 2.7 38.0 1.0
FE3 7:SF4501 2.7 38.0 1.0
CB 7:CYS339 3.5 46.8 1.0
CE 7:MET307 3.6 46.5 1.0
S4 7:SF4501 3.9 38.0 1.0
CD 7:PRO340 4.1 45.9 1.0
CB 7:CYS347 4.2 40.0 1.0
CA 7:CYS339 4.2 46.8 1.0
NE2 7:HIS303 4.3 43.8 1.0
SG 7:CYS347 4.3 40.0 1.0
SG 7:CYS333 4.5 41.2 1.0
N 7:PRO340 4.7 45.9 1.0
SG 7:CYS404 4.7 48.6 1.0
CG 7:PRO340 4.8 45.9 1.0
C 7:CYS339 4.8 46.8 1.0
CB 7:GLN341 4.9 51.4 1.0
N 7:GLN341 4.9 51.4 1.0

Iron binding site 5 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 5 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe201

b:88.4
occ:1.00
 FE1 P:FES201 0.0 88.4 1.0
S2 P:FES201 2.2 88.4 1.0
S1 P:FES201 2.2 88.4 1.0
SG P:CYS100 2.3 47.9 1.0
SG P:CYS65 2.3 52.9 1.0
FE2 P:FES201 2.7 88.4 1.0
CB P:CYS100 3.2 47.9 1.0
CB P:CYS65 3.7 52.9 1.0
SG P:CYS68 4.2 54.7 1.0
CB P:CYS68 4.2 54.7 1.0
N P:CYS65 4.3 52.9 1.0
N P:CYS100 4.4 47.9 1.0
CB P:LYS103 4.4 44.7 1.0
CA P:CYS100 4.4 47.9 1.0
CA P:CYS68 4.5 54.7 1.0
CE P:LYS103 4.6 44.7 1.0
SG E:CYS105 4.6 76.6 1.0
CA P:CYS65 4.6 52.9 1.0
N P:CYS68 4.8 54.7 1.0

Iron binding site 6 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 6 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe201

b:88.4
occ:1.00
 FE2 P:FES201 0.0 88.4 1.0
S1 P:FES201 2.2 88.4 1.0
S2 P:FES201 2.2 88.4 1.0
SG E:CYS105 2.3 76.6 1.0
SG P:CYS68 2.3 54.7 1.0
FE1 P:FES201 2.7 88.4 1.0
CB E:CYS105 3.0 76.6 1.0
CB P:CYS68 3.5 54.7 1.0
CA E:GLY107 4.1 68.8 1.0
N E:GLY107 4.1 68.8 1.0
CA P:CYS68 4.2 54.7 1.0
SG P:CYS65 4.3 52.9 1.0
CA E:CYS105 4.4 76.6 1.0
SG P:CYS100 4.5 47.9 1.0
C E:CYS105 4.6 76.6 1.0
C E:GLY107 4.7 68.8 1.0
O E:CYS105 4.9 76.6 1.0
O E:GLY107 5.0 68.8 1.0

Iron binding site 7 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 7 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Fe201

b:65.9
occ:1.00
 FE1 T:FES201 0.0 65.9 1.0
S2 T:FES201 2.2 65.9 1.0
S1 T:FES201 2.2 65.9 1.0
SG T:CYS149 2.3 41.5 1.0
SG M:CYS26 2.3 37.0 1.0
FE2 T:FES201 2.7 65.9 1.0
CB T:CYS149 3.6 41.5 1.0
CB M:CYS26 3.8 37.0 1.0
SG T:CYS141 4.0 38.9 1.0
CA T:CYS149 4.3 41.5 1.0
N M:CYS26 4.3 37.0 1.0
C M:GLY25 4.5 31.9 1.0
CD T:PRO150 4.5 39.1 1.0
CA M:CYS26 4.7 37.0 1.0
CA M:GLY25 4.7 31.9 1.0
SG T:CYS139 4.7 39.7 1.0
O M:GLY25 4.9 31.9 1.0

Iron binding site 8 out of 8 in 8csu

Go back to Iron Binding Sites List in 8csu
Iron binding site 8 out of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Fe201

b:65.9
occ:1.00
 FE2 T:FES201 0.0 65.9 1.0
S2 T:FES201 2.2 65.9 1.0
S1 T:FES201 2.2 65.9 1.0
SG T:CYS141 2.3 38.9 1.0
SG T:CYS139 2.3 39.7 1.0
CB T:CYS139 2.6 39.7 1.0
FE1 T:FES201 2.7 65.9 1.0
CB T:CYS141 3.4 38.9 1.0
CA T:CYS139 4.1 39.7 1.0
SG T:CYS149 4.3 41.5 1.0
N T:CYS141 4.3 38.9 1.0
CA T:CYS141 4.4 38.9 1.0
CB T:CYS149 4.6 41.5 1.0
CA M:GLY25 4.6 31.9 1.0
C T:CYS139 4.6 39.7 1.0
SG M:CYS26 4.7 37.0 1.0
N T:CYS139 4.9 39.7 1.0
N T:ILE140 4.9 33.5 1.0

Reference:

N.J.Harper, C.Burnside, S.Klinge. Principles of Mitoribosomal Small Subunit Assembly in Eukaryotes. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36482135
DOI: 10.1038/S41586-022-05621-0
Page generated: Thu Aug 7 15:16:03 2025

Last articles

Mg in 2OQY
Mg in 2OUP
Mg in 2OUN
Mg in 2OU7
Mg in 2OTG
Mg in 2OSB
Mg in 2OS8
Mg in 2ORI
Mg in 2ORW
Mg in 2ONP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy