Iron in PDB 8csu: Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Other elements in 8csu:
The structure of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
(pdb code 8csu). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Human Mitochondrial Small Subunit Assembly Intermediate (State C*), PDB code: 8csu:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 8csu
Go back to
Iron Binding Sites List in 8csu
Iron binding site 1 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Fe501
b:38.0
occ:1.00
|
FE1
|
7:SF4501
|
0.0
|
38.0
|
1.0
|
S2
|
7:SF4501
|
2.2
|
38.0
|
1.0
|
SG
|
7:CYS404
|
2.3
|
48.6
|
1.0
|
S4
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
S3
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
FE3
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE4
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE2
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
CB
|
7:CYS404
|
3.1
|
48.6
|
1.0
|
S1
|
7:SF4501
|
3.9
|
38.0
|
1.0
|
NE2
|
7:HIS335
|
4.0
|
45.0
|
1.0
|
CD
|
7:PRO340
|
4.2
|
45.9
|
1.0
|
CG
|
7:PRO340
|
4.5
|
45.9
|
1.0
|
SG
|
7:CYS333
|
4.6
|
41.2
|
1.0
|
CA
|
7:CYS404
|
4.6
|
48.6
|
1.0
|
SG
|
7:CYS339
|
4.6
|
46.8
|
1.0
|
CG2
|
7:THR389
|
4.7
|
42.9
|
1.0
|
CD
|
7:PRO334
|
4.7
|
46.3
|
1.0
|
CB
|
7:CYS333
|
4.7
|
41.2
|
1.0
|
CA
|
7:CYS333
|
4.7
|
41.2
|
1.0
|
CD2
|
7:HIS335
|
4.8
|
45.0
|
1.0
|
CE1
|
7:HIS335
|
4.9
|
45.0
|
1.0
|
SG
|
7:CYS347
|
5.0
|
40.0
|
1.0
|
|
Iron binding site 2 out
of 8 in 8csu
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Iron Binding Sites List in 8csu
Iron binding site 2 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Fe501
b:38.0
occ:1.00
|
FE2
|
7:SF4501
|
0.0
|
38.0
|
1.0
|
S1
|
7:SF4501
|
2.2
|
38.0
|
1.0
|
SG
|
7:CYS347
|
2.3
|
40.0
|
1.0
|
S3
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
S4
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
FE4
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE3
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE1
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
CB
|
7:CYS347
|
3.2
|
40.0
|
1.0
|
CG2
|
7:THR389
|
3.6
|
42.9
|
1.0
|
S2
|
7:SF4501
|
3.9
|
38.0
|
1.0
|
CB
|
7:THR389
|
4.4
|
42.9
|
1.0
|
CA
|
7:CYS347
|
4.6
|
40.0
|
1.0
|
SG
|
7:CYS404
|
4.8
|
48.6
|
1.0
|
SG
|
7:CYS339
|
4.8
|
46.8
|
1.0
|
CB
|
7:CYS404
|
4.8
|
48.6
|
1.0
|
CG
|
7:PRO332
|
4.8
|
38.6
|
1.0
|
SG
|
7:CYS333
|
4.9
|
41.2
|
1.0
|
|
Iron binding site 3 out
of 8 in 8csu
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Iron Binding Sites List in 8csu
Iron binding site 3 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Fe501
b:38.0
occ:1.00
|
FE3
|
7:SF4501
|
0.0
|
38.0
|
1.0
|
S4
|
7:SF4501
|
2.2
|
38.0
|
1.0
|
SG
|
7:CYS333
|
2.3
|
41.2
|
1.0
|
S1
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
S2
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
FE1
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE4
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE2
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
CB
|
7:CYS333
|
3.3
|
41.2
|
1.0
|
CA
|
7:CYS333
|
3.6
|
41.2
|
1.0
|
N
|
7:CYS333
|
3.9
|
41.2
|
1.0
|
S3
|
7:SF4501
|
3.9
|
38.0
|
1.0
|
CG
|
7:PRO332
|
4.2
|
38.6
|
1.0
|
CE
|
7:MET307
|
4.3
|
46.5
|
1.0
|
C
|
7:PRO332
|
4.5
|
38.6
|
1.0
|
SG
|
7:CYS347
|
4.6
|
40.0
|
1.0
|
CD
|
7:PRO332
|
4.7
|
38.6
|
1.0
|
SG
|
7:CYS404
|
4.7
|
48.6
|
1.0
|
SG
|
7:CYS339
|
4.8
|
46.8
|
1.0
|
O
|
7:PRO332
|
4.9
|
38.6
|
1.0
|
CB
|
7:PRO332
|
5.0
|
38.6
|
1.0
|
|
Iron binding site 4 out
of 8 in 8csu
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Iron Binding Sites List in 8csu
Iron binding site 4 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Fe501
b:38.0
occ:1.00
|
FE4
|
7:SF4501
|
0.0
|
38.0
|
1.0
|
S3
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
SG
|
7:CYS339
|
2.3
|
46.8
|
1.0
|
S1
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
S2
|
7:SF4501
|
2.3
|
38.0
|
1.0
|
FE1
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE2
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
FE3
|
7:SF4501
|
2.7
|
38.0
|
1.0
|
CB
|
7:CYS339
|
3.5
|
46.8
|
1.0
|
CE
|
7:MET307
|
3.6
|
46.5
|
1.0
|
S4
|
7:SF4501
|
3.9
|
38.0
|
1.0
|
CD
|
7:PRO340
|
4.1
|
45.9
|
1.0
|
CB
|
7:CYS347
|
4.2
|
40.0
|
1.0
|
CA
|
7:CYS339
|
4.2
|
46.8
|
1.0
|
NE2
|
7:HIS303
|
4.3
|
43.8
|
1.0
|
SG
|
7:CYS347
|
4.3
|
40.0
|
1.0
|
SG
|
7:CYS333
|
4.5
|
41.2
|
1.0
|
N
|
7:PRO340
|
4.7
|
45.9
|
1.0
|
SG
|
7:CYS404
|
4.7
|
48.6
|
1.0
|
CG
|
7:PRO340
|
4.8
|
45.9
|
1.0
|
C
|
7:CYS339
|
4.8
|
46.8
|
1.0
|
CB
|
7:GLN341
|
4.9
|
51.4
|
1.0
|
N
|
7:GLN341
|
4.9
|
51.4
|
1.0
|
|
Iron binding site 5 out
of 8 in 8csu
Go back to
Iron Binding Sites List in 8csu
Iron binding site 5 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe201
b:88.4
occ:1.00
|
FE1
|
P:FES201
|
0.0
|
88.4
|
1.0
|
S2
|
P:FES201
|
2.2
|
88.4
|
1.0
|
S1
|
P:FES201
|
2.2
|
88.4
|
1.0
|
SG
|
P:CYS100
|
2.3
|
47.9
|
1.0
|
SG
|
P:CYS65
|
2.3
|
52.9
|
1.0
|
FE2
|
P:FES201
|
2.7
|
88.4
|
1.0
|
CB
|
P:CYS100
|
3.2
|
47.9
|
1.0
|
CB
|
P:CYS65
|
3.7
|
52.9
|
1.0
|
SG
|
P:CYS68
|
4.2
|
54.7
|
1.0
|
CB
|
P:CYS68
|
4.2
|
54.7
|
1.0
|
N
|
P:CYS65
|
4.3
|
52.9
|
1.0
|
N
|
P:CYS100
|
4.4
|
47.9
|
1.0
|
CB
|
P:LYS103
|
4.4
|
44.7
|
1.0
|
CA
|
P:CYS100
|
4.4
|
47.9
|
1.0
|
CA
|
P:CYS68
|
4.5
|
54.7
|
1.0
|
CE
|
P:LYS103
|
4.6
|
44.7
|
1.0
|
SG
|
E:CYS105
|
4.6
|
76.6
|
1.0
|
CA
|
P:CYS65
|
4.6
|
52.9
|
1.0
|
N
|
P:CYS68
|
4.8
|
54.7
|
1.0
|
|
Iron binding site 6 out
of 8 in 8csu
Go back to
Iron Binding Sites List in 8csu
Iron binding site 6 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe201
b:88.4
occ:1.00
|
FE2
|
P:FES201
|
0.0
|
88.4
|
1.0
|
S1
|
P:FES201
|
2.2
|
88.4
|
1.0
|
S2
|
P:FES201
|
2.2
|
88.4
|
1.0
|
SG
|
E:CYS105
|
2.3
|
76.6
|
1.0
|
SG
|
P:CYS68
|
2.3
|
54.7
|
1.0
|
FE1
|
P:FES201
|
2.7
|
88.4
|
1.0
|
CB
|
E:CYS105
|
3.0
|
76.6
|
1.0
|
CB
|
P:CYS68
|
3.5
|
54.7
|
1.0
|
CA
|
E:GLY107
|
4.1
|
68.8
|
1.0
|
N
|
E:GLY107
|
4.1
|
68.8
|
1.0
|
CA
|
P:CYS68
|
4.2
|
54.7
|
1.0
|
SG
|
P:CYS65
|
4.3
|
52.9
|
1.0
|
CA
|
E:CYS105
|
4.4
|
76.6
|
1.0
|
SG
|
P:CYS100
|
4.5
|
47.9
|
1.0
|
C
|
E:CYS105
|
4.6
|
76.6
|
1.0
|
C
|
E:GLY107
|
4.7
|
68.8
|
1.0
|
O
|
E:CYS105
|
4.9
|
76.6
|
1.0
|
O
|
E:GLY107
|
5.0
|
68.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 8csu
Go back to
Iron Binding Sites List in 8csu
Iron binding site 7 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Fe201
b:65.9
occ:1.00
|
FE1
|
T:FES201
|
0.0
|
65.9
|
1.0
|
S2
|
T:FES201
|
2.2
|
65.9
|
1.0
|
S1
|
T:FES201
|
2.2
|
65.9
|
1.0
|
SG
|
T:CYS149
|
2.3
|
41.5
|
1.0
|
SG
|
M:CYS26
|
2.3
|
37.0
|
1.0
|
FE2
|
T:FES201
|
2.7
|
65.9
|
1.0
|
CB
|
T:CYS149
|
3.6
|
41.5
|
1.0
|
CB
|
M:CYS26
|
3.8
|
37.0
|
1.0
|
SG
|
T:CYS141
|
4.0
|
38.9
|
1.0
|
CA
|
T:CYS149
|
4.3
|
41.5
|
1.0
|
N
|
M:CYS26
|
4.3
|
37.0
|
1.0
|
C
|
M:GLY25
|
4.5
|
31.9
|
1.0
|
CD
|
T:PRO150
|
4.5
|
39.1
|
1.0
|
CA
|
M:CYS26
|
4.7
|
37.0
|
1.0
|
CA
|
M:GLY25
|
4.7
|
31.9
|
1.0
|
SG
|
T:CYS139
|
4.7
|
39.7
|
1.0
|
O
|
M:GLY25
|
4.9
|
31.9
|
1.0
|
|
Iron binding site 8 out
of 8 in 8csu
Go back to
Iron Binding Sites List in 8csu
Iron binding site 8 out
of 8 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Fe201
b:65.9
occ:1.00
|
FE2
|
T:FES201
|
0.0
|
65.9
|
1.0
|
S2
|
T:FES201
|
2.2
|
65.9
|
1.0
|
S1
|
T:FES201
|
2.2
|
65.9
|
1.0
|
SG
|
T:CYS141
|
2.3
|
38.9
|
1.0
|
SG
|
T:CYS139
|
2.3
|
39.7
|
1.0
|
CB
|
T:CYS139
|
2.6
|
39.7
|
1.0
|
FE1
|
T:FES201
|
2.7
|
65.9
|
1.0
|
CB
|
T:CYS141
|
3.4
|
38.9
|
1.0
|
CA
|
T:CYS139
|
4.1
|
39.7
|
1.0
|
SG
|
T:CYS149
|
4.3
|
41.5
|
1.0
|
N
|
T:CYS141
|
4.3
|
38.9
|
1.0
|
CA
|
T:CYS141
|
4.4
|
38.9
|
1.0
|
CB
|
T:CYS149
|
4.6
|
41.5
|
1.0
|
CA
|
M:GLY25
|
4.6
|
31.9
|
1.0
|
C
|
T:CYS139
|
4.6
|
39.7
|
1.0
|
SG
|
M:CYS26
|
4.7
|
37.0
|
1.0
|
N
|
T:CYS139
|
4.9
|
39.7
|
1.0
|
N
|
T:ILE140
|
4.9
|
33.5
|
1.0
|
|
Reference:
N.J.Harper,
C.Burnside,
S.Klinge.
Principles of Mitoribosomal Small Subunit Assembly in Eukaryotes. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36482135
DOI: 10.1038/S41586-022-05621-0
Page generated: Fri Aug 9 23:01:42 2024
|