Atomistry » Iron » PDB 8csq-8djr » 8cu8
Atomistry »
  Iron »
    PDB 8csq-8djr »
      8cu8 »

Iron in PDB 8cu8: Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2

Enzymatic activity of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2

All present enzymatic activity of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2:
1.16.3.1;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 (pdb code 8cu8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2, PDB code: 8cu8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 1 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:55.8
occ:0.50
 O A:HOH360 2.0 58.1 1.0
OE1 A:GLU58 2.1 56.0 1.0
OE1 A:GLU23 2.1 52.5 1.0
ND1 A:HIS61 2.4 55.3 1.0
CD A:GLU58 2.9 56.0 1.0
OE2 A:GLU58 3.1 56.0 1.0
CD A:GLU23 3.2 52.5 1.0
ND2 A:ASN106 3.2 55.8 0.5
CE1 A:HIS61 3.3 55.3 1.0
CG A:HIS61 3.5 55.3 1.0
OE2 A:GLU23 3.7 52.5 1.0
CB A:HIS61 3.8 55.3 1.0
O A:HOH305 4.1 58.2 1.0
CG A:GLU58 4.2 56.0 1.0
OE1 A:GLN137 4.3 57.2 1.0
O A:HOH311 4.3 59.6 1.0
CA A:GLU58 4.4 56.0 1.0
CG A:ASN106 4.4 55.8 0.5
ND2 A:ASN106 4.4 55.8 0.5
CG A:GLU23 4.5 52.5 1.0
NE2 A:HIS61 4.5 55.3 1.0
CB A:GLU58 4.5 56.0 1.0
CD2 A:HIS61 4.6 55.3 1.0
O A:HOH302 4.7 55.2 1.0
CB A:GLU23 4.8 52.5 1.0
OD1 A:ASN106 4.9 55.8 0.5

Iron binding site 2 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 2 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:56.1
occ:0.50
 O C:HOH359 2.0 58.1 1.0
OE1 C:GLU58 2.1 55.7 1.0
OE1 C:GLU23 2.1 52.6 1.0
ND1 C:HIS61 2.4 55.4 1.0
CD C:GLU58 2.9 55.7 1.0
OE2 C:GLU58 3.1 55.7 1.0
CD C:GLU23 3.2 52.6 1.0
ND2 C:ASN106 3.2 55.8 0.5
CE1 C:HIS61 3.3 55.4 1.0
CG C:HIS61 3.5 55.4 1.0
OE2 C:GLU23 3.7 52.6 1.0
CB C:HIS61 3.8 55.4 1.0
O C:HOH365 3.9 57.8 1.0
O C:HOH303 4.1 58.1 1.0
CG C:GLU58 4.2 55.7 1.0
OE1 C:GLN137 4.3 57.3 1.0
O C:HOH311 4.3 59.8 1.0
CA C:GLU58 4.4 55.7 1.0
CG C:ASN106 4.4 55.8 0.5
ND2 C:ASN106 4.4 55.8 0.5
CG C:GLU23 4.5 52.6 1.0
NE2 C:HIS61 4.5 55.4 1.0
CB C:GLU58 4.5 55.7 1.0
CD2 C:HIS61 4.6 55.4 1.0
CB C:GLU23 4.8 52.6 1.0
O C:HOH305 4.8 55.6 1.0
OD1 C:ASN106 4.9 55.8 0.5

Iron binding site 3 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 3 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:56.3
occ:0.50
 O D:HOH359 2.0 58.3 1.0
OE1 D:GLU58 2.1 55.8 1.0
OE1 D:GLU23 2.1 52.6 1.0
ND1 D:HIS61 2.4 55.4 1.0
CD D:GLU58 2.9 55.8 1.0
OE2 D:GLU58 3.1 55.8 1.0
CD D:GLU23 3.2 52.6 1.0
ND2 D:ASN106 3.2 55.8 0.5
CE1 D:HIS61 3.3 55.4 1.0
CG D:HIS61 3.5 55.4 1.0
OE2 D:GLU23 3.7 52.6 1.0
CB D:HIS61 3.8 55.4 1.0
O D:HOH365 3.9 57.7 1.0
O D:HOH303 4.1 58.3 1.0
CG D:GLU58 4.2 55.8 1.0
OE1 D:GLN137 4.3 57.3 1.0
O D:HOH309 4.3 59.2 1.0
CA D:GLU58 4.4 55.8 1.0
CG D:ASN106 4.4 55.8 0.5
ND2 D:ASN106 4.4 55.8 0.5
CG D:GLU23 4.5 52.6 1.0
NE2 D:HIS61 4.5 55.4 1.0
CB D:GLU58 4.5 55.8 1.0
CD2 D:HIS61 4.6 55.4 1.0
CB D:GLU23 4.8 52.6 1.0
O D:HOH306 4.8 55.7 1.0
OD1 D:ASN106 4.9 55.8 0.5

Iron binding site 4 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 4 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:55.8
occ:0.50
 O E:HOH359 2.0 57.7 1.0
OE1 E:GLU58 2.1 55.6 1.0
OE1 E:GLU23 2.1 52.5 1.0
ND1 E:HIS61 2.4 55.4 1.0
CD E:GLU58 2.9 55.6 1.0
OE2 E:GLU58 3.1 55.6 1.0
CD E:GLU23 3.2 52.5 1.0
ND2 E:ASN106 3.2 55.6 0.5
CE1 E:HIS61 3.3 55.4 1.0
CG E:HIS61 3.5 55.4 1.0
OE2 E:GLU23 3.7 52.5 1.0
CB E:HIS61 3.8 55.4 1.0
O E:HOH365 3.9 57.8 1.0
O E:HOH303 4.1 58.1 1.0
CG E:GLU58 4.2 55.6 1.0
OE1 E:GLN137 4.3 57.2 1.0
O E:HOH309 4.3 58.9 1.0
CA E:GLU58 4.4 55.6 1.0
CG E:ASN106 4.4 55.6 0.5
ND2 E:ASN106 4.4 55.6 0.5
CG E:GLU23 4.5 52.5 1.0
NE2 E:HIS61 4.5 55.4 1.0
CB E:GLU58 4.5 55.6 1.0
CD2 E:HIS61 4.6 55.4 1.0
CB E:GLU23 4.8 52.5 1.0
O E:HOH306 4.8 55.6 1.0
OD1 E:ASN106 4.9 55.6 0.5

Iron binding site 5 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 5 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:55.8
occ:0.50
 O F:HOH359 2.0 57.8 1.0
OE1 F:GLU58 2.1 55.5 1.0
OE1 F:GLU23 2.1 52.4 1.0
ND1 F:HIS61 2.4 55.1 1.0
CD F:GLU58 2.9 55.5 1.0
OE2 F:GLU58 3.1 55.5 1.0
CD F:GLU23 3.2 52.4 1.0
ND2 F:ASN106 3.2 55.8 0.5
CE1 F:HIS61 3.3 55.1 1.0
CG F:HIS61 3.5 55.1 1.0
OE2 F:GLU23 3.7 52.4 1.0
CB F:HIS61 3.8 55.1 1.0
O F:HOH365 3.9 58.0 1.0
O F:HOH303 4.1 58.0 1.0
CG F:GLU58 4.2 55.5 1.0
OE1 F:GLN137 4.3 57.3 1.0
O F:HOH309 4.3 59.3 1.0
CA F:GLU58 4.4 55.5 1.0
CG F:ASN106 4.4 55.8 0.5
ND2 F:ASN106 4.4 55.8 0.5
CG F:GLU23 4.5 52.4 1.0
NE2 F:HIS61 4.5 55.1 1.0
CB F:GLU58 4.5 55.5 1.0
CD2 F:HIS61 4.6 55.1 1.0
CB F:GLU23 4.8 52.4 1.0
O F:HOH304 4.8 55.9 1.0
OD1 F:ASN106 4.9 55.8 0.5

Iron binding site 6 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 6 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:56.0
occ:0.50
 O G:HOH359 2.0 57.9 1.0
OE1 G:GLU58 2.1 55.6 1.0
OE1 G:GLU23 2.1 52.6 1.0
ND1 G:HIS61 2.4 55.5 1.0
CD G:GLU58 2.9 55.6 1.0
OE2 G:GLU58 3.1 55.6 1.0
CD G:GLU23 3.2 52.6 1.0
ND2 G:ASN106 3.2 55.9 0.5
CE1 G:HIS61 3.3 55.5 1.0
CG G:HIS61 3.5 55.5 1.0
OE2 G:GLU23 3.7 52.6 1.0
CB G:HIS61 3.8 55.5 1.0
O G:HOH365 3.9 57.9 1.0
O G:HOH303 4.1 58.4 1.0
CG G:GLU58 4.2 55.6 1.0
OE1 G:GLN137 4.3 57.4 1.0
O G:HOH311 4.3 60.2 1.0
CA G:GLU58 4.4 55.6 1.0
CG G:ASN106 4.4 55.9 0.5
ND2 G:ASN106 4.4 55.9 0.5
CG G:GLU23 4.5 52.6 1.0
NE2 G:HIS61 4.5 55.5 1.0
CB G:GLU58 4.5 55.6 1.0
CD2 G:HIS61 4.6 55.5 1.0
CB G:GLU23 4.8 52.6 1.0
O G:HOH305 4.8 56.0 1.0
OD1 G:ASN106 4.9 55.9 0.5

Iron binding site 7 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 7 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:55.9
occ:0.50
 O H:HOH360 2.0 58.1 1.0
OE1 H:GLU58 2.1 55.7 1.0
OE1 H:GLU23 2.1 52.5 1.0
ND1 H:HIS61 2.4 55.2 1.0
CD H:GLU58 2.9 55.7 1.0
OE2 H:GLU58 3.1 55.7 1.0
CD H:GLU23 3.2 52.5 1.0
ND2 H:ASN106 3.2 55.9 0.5
CE1 H:HIS61 3.3 55.2 1.0
CG H:HIS61 3.5 55.2 1.0
OE2 H:GLU23 3.7 52.5 1.0
CB H:HIS61 3.8 55.2 1.0
O H:HOH368 3.9 57.6 1.0
O H:HOH304 4.1 58.1 1.0
CG H:GLU58 4.2 55.7 1.0
OE1 H:GLN137 4.3 57.3 1.0
O H:HOH310 4.3 59.5 1.0
CA H:GLU58 4.4 55.7 1.0
CG H:ASN106 4.4 55.9 0.5
ND2 H:ASN106 4.4 55.9 0.5
CG H:GLU23 4.5 52.5 1.0
NE2 H:HIS61 4.5 55.2 1.0
CB H:GLU58 4.5 55.7 1.0
CD2 H:HIS61 4.6 55.2 1.0
CB H:GLU23 4.8 52.5 1.0
O H:HOH307 4.8 55.4 1.0
OD1 H:ASN106 4.9 55.9 0.5

Iron binding site 8 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 8 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:56.4
occ:0.50
 O I:HOH359 2.0 58.2 1.0
OE1 I:GLU58 2.1 55.9 1.0
OE1 I:GLU23 2.1 52.7 1.0
ND1 I:HIS61 2.4 55.9 1.0
CD I:GLU58 2.9 55.9 1.0
OE2 I:GLU58 3.1 55.9 1.0
CD I:GLU23 3.2 52.7 1.0
ND2 I:ASN106 3.2 55.8 0.5
CE1 I:HIS61 3.3 55.9 1.0
CG I:HIS61 3.5 55.9 1.0
OE2 I:GLU23 3.7 52.7 1.0
CB I:HIS61 3.8 55.9 1.0
O I:HOH365 3.9 58.2 1.0
O I:HOH303 4.1 58.1 1.0
CG I:GLU58 4.2 55.9 1.0
OE1 I:GLN137 4.3 57.6 1.0
O I:HOH309 4.3 59.9 1.0
CA I:GLU58 4.4 55.9 1.0
CG I:ASN106 4.4 55.8 0.5
ND2 I:ASN106 4.4 55.8 0.5
CG I:GLU23 4.5 52.7 1.0
NE2 I:HIS61 4.5 55.9 1.0
CB I:GLU58 4.5 55.9 1.0
CD2 I:HIS61 4.6 55.9 1.0
CB I:GLU23 4.8 52.7 1.0
O I:HOH305 4.8 56.0 1.0
OD1 I:ASN106 4.9 55.8 0.5

Iron binding site 9 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 9 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:56.3
occ:0.50
 O J:HOH360 2.0 58.4 1.0
OE1 J:GLU58 2.1 56.0 1.0
OE1 J:GLU23 2.1 52.7 1.0
ND1 J:HIS61 2.4 55.6 1.0
CD J:GLU58 2.9 56.0 1.0
OE2 J:GLU58 3.1 56.0 1.0
CD J:GLU23 3.2 52.7 1.0
ND2 J:ASN106 3.2 56.0 0.5
CE1 J:HIS61 3.3 55.6 1.0
CG J:HIS61 3.5 55.6 1.0
OE2 J:GLU23 3.7 52.7 1.0
CB J:HIS61 3.8 55.6 1.0
O J:HOH368 3.9 57.7 1.0
O J:HOH304 4.1 58.1 1.0
CG J:GLU58 4.2 56.0 1.0
OE1 J:GLN137 4.3 57.5 1.0
O J:HOH311 4.3 59.5 1.0
CA J:GLU58 4.4 56.0 1.0
CG J:ASN106 4.4 56.0 0.5
ND2 J:ASN106 4.4 56.0 0.5
CG J:GLU23 4.5 52.7 1.0
NE2 J:HIS61 4.5 55.6 1.0
CB J:GLU58 4.5 56.0 1.0
CD2 J:HIS61 4.6 55.6 1.0
CB J:GLU23 4.8 52.7 1.0
O J:HOH307 4.8 55.9 1.0
OD1 J:ASN106 4.9 56.0 0.5

Iron binding site 10 out of 24 in 8cu8

Go back to Iron Binding Sites List in 8cu8
Iron binding site 10 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe201

b:56.3
occ:0.50
 O K:HOH359 2.0 58.4 1.0
OE1 K:GLU58 2.1 56.0 1.0
OE1 K:GLU23 2.1 52.7 1.0
ND1 K:HIS61 2.4 55.7 1.0
CD K:GLU58 2.9 56.0 1.0
OE2 K:GLU58 3.1 56.0 1.0
CD K:GLU23 3.2 52.7 1.0
ND2 K:ASN106 3.2 55.6 0.5
CE1 K:HIS61 3.3 55.7 1.0
CG K:HIS61 3.5 55.7 1.0
OE2 K:GLU23 3.7 52.7 1.0
CB K:HIS61 3.8 55.7 1.0
O K:HOH365 3.9 57.7 1.0
O K:HOH303 4.1 57.8 1.0
CG K:GLU58 4.2 56.0 1.0
OE1 K:GLN137 4.3 57.3 1.0
O K:HOH309 4.3 59.4 1.0
CA K:GLU58 4.4 56.0 1.0
CG K:ASN106 4.4 55.6 0.5
ND2 K:ASN106 4.4 55.6 0.5
CG K:GLU23 4.5 52.7 1.0
NE2 K:HIS61 4.5 55.7 1.0
CB K:GLU58 4.5 56.0 1.0
CD2 K:HIS61 4.6 55.7 1.0
CB K:GLU23 4.8 52.7 1.0
O K:HOH306 4.8 55.8 1.0
OD1 K:ASN106 4.9 55.6 0.5

Reference:

S.M.M.Mubarak, T.R.Malcolm, H.G.Brown, E.Hanssen, M.J.Maher, G.Mccoll, G.N.L.Jameson. Biochemical Characterization of Caenorhabditis Elegans Ferritins To Be Published.
Page generated: Fri Aug 9 23:01:39 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy