Iron in PDB 8cu8: Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2

Enzymatic activity of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2

All present enzymatic activity of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2:
1.16.3.1;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 (pdb code 8cu8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2, PDB code: 8cu8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in 8cu8

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Iron binding site 1 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:55.8
occ:0.50
 O A:HOH360 2.0 58.1 1.0
OE1 A:GLU58 2.1 56.0 1.0
OE1 A:GLU23 2.1 52.5 1.0
ND1 A:HIS61 2.4 55.3 1.0
CD A:GLU58 2.9 56.0 1.0
OE2 A:GLU58 3.1 56.0 1.0
CD A:GLU23 3.2 52.5 1.0
ND2 A:ASN106 3.2 55.8 0.5
CE1 A:HIS61 3.3 55.3 1.0
CG A:HIS61 3.5 55.3 1.0
OE2 A:GLU23 3.7 52.5 1.0
CB A:HIS61 3.8 55.3 1.0
O A:HOH305 4.1 58.2 1.0
CG A:GLU58 4.2 56.0 1.0
OE1 A:GLN137 4.3 57.2 1.0
O A:HOH311 4.3 59.6 1.0
CA A:GLU58 4.4 56.0 1.0
CG A:ASN106 4.4 55.8 0.5
ND2 A:ASN106 4.4 55.8 0.5
CG A:GLU23 4.5 52.5 1.0
NE2 A:HIS61 4.5 55.3 1.0
CB A:GLU58 4.5 56.0 1.0
CD2 A:HIS61 4.6 55.3 1.0
O A:HOH302 4.7 55.2 1.0
CB A:GLU23 4.8 52.5 1.0
OD1 A:ASN106 4.9 55.8 0.5

Iron binding site 2 out of 24 in 8cu8

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Iron binding site 2 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:56.1
occ:0.50
 O C:HOH359 2.0 58.1 1.0
OE1 C:GLU58 2.1 55.7 1.0
OE1 C:GLU23 2.1 52.6 1.0
ND1 C:HIS61 2.4 55.4 1.0
CD C:GLU58 2.9 55.7 1.0
OE2 C:GLU58 3.1 55.7 1.0
CD C:GLU23 3.2 52.6 1.0
ND2 C:ASN106 3.2 55.8 0.5
CE1 C:HIS61 3.3 55.4 1.0
CG C:HIS61 3.5 55.4 1.0
OE2 C:GLU23 3.7 52.6 1.0
CB C:HIS61 3.8 55.4 1.0
O C:HOH365 3.9 57.8 1.0
O C:HOH303 4.1 58.1 1.0
CG C:GLU58 4.2 55.7 1.0
OE1 C:GLN137 4.3 57.3 1.0
O C:HOH311 4.3 59.8 1.0
CA C:GLU58 4.4 55.7 1.0
CG C:ASN106 4.4 55.8 0.5
ND2 C:ASN106 4.4 55.8 0.5
CG C:GLU23 4.5 52.6 1.0
NE2 C:HIS61 4.5 55.4 1.0
CB C:GLU58 4.5 55.7 1.0
CD2 C:HIS61 4.6 55.4 1.0
CB C:GLU23 4.8 52.6 1.0
O C:HOH305 4.8 55.6 1.0
OD1 C:ASN106 4.9 55.8 0.5

Iron binding site 3 out of 24 in 8cu8

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Iron binding site 3 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:56.3
occ:0.50
 O D:HOH359 2.0 58.3 1.0
OE1 D:GLU58 2.1 55.8 1.0
OE1 D:GLU23 2.1 52.6 1.0
ND1 D:HIS61 2.4 55.4 1.0
CD D:GLU58 2.9 55.8 1.0
OE2 D:GLU58 3.1 55.8 1.0
CD D:GLU23 3.2 52.6 1.0
ND2 D:ASN106 3.2 55.8 0.5
CE1 D:HIS61 3.3 55.4 1.0
CG D:HIS61 3.5 55.4 1.0
OE2 D:GLU23 3.7 52.6 1.0
CB D:HIS61 3.8 55.4 1.0
O D:HOH365 3.9 57.7 1.0
O D:HOH303 4.1 58.3 1.0
CG D:GLU58 4.2 55.8 1.0
OE1 D:GLN137 4.3 57.3 1.0
O D:HOH309 4.3 59.2 1.0
CA D:GLU58 4.4 55.8 1.0
CG D:ASN106 4.4 55.8 0.5
ND2 D:ASN106 4.4 55.8 0.5
CG D:GLU23 4.5 52.6 1.0
NE2 D:HIS61 4.5 55.4 1.0
CB D:GLU58 4.5 55.8 1.0
CD2 D:HIS61 4.6 55.4 1.0
CB D:GLU23 4.8 52.6 1.0
O D:HOH306 4.8 55.7 1.0
OD1 D:ASN106 4.9 55.8 0.5

Iron binding site 4 out of 24 in 8cu8

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Iron binding site 4 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:55.8
occ:0.50
 O E:HOH359 2.0 57.7 1.0
OE1 E:GLU58 2.1 55.6 1.0
OE1 E:GLU23 2.1 52.5 1.0
ND1 E:HIS61 2.4 55.4 1.0
CD E:GLU58 2.9 55.6 1.0
OE2 E:GLU58 3.1 55.6 1.0
CD E:GLU23 3.2 52.5 1.0
ND2 E:ASN106 3.2 55.6 0.5
CE1 E:HIS61 3.3 55.4 1.0
CG E:HIS61 3.5 55.4 1.0
OE2 E:GLU23 3.7 52.5 1.0
CB E:HIS61 3.8 55.4 1.0
O E:HOH365 3.9 57.8 1.0
O E:HOH303 4.1 58.1 1.0
CG E:GLU58 4.2 55.6 1.0
OE1 E:GLN137 4.3 57.2 1.0
O E:HOH309 4.3 58.9 1.0
CA E:GLU58 4.4 55.6 1.0
CG E:ASN106 4.4 55.6 0.5
ND2 E:ASN106 4.4 55.6 0.5
CG E:GLU23 4.5 52.5 1.0
NE2 E:HIS61 4.5 55.4 1.0
CB E:GLU58 4.5 55.6 1.0
CD2 E:HIS61 4.6 55.4 1.0
CB E:GLU23 4.8 52.5 1.0
O E:HOH306 4.8 55.6 1.0
OD1 E:ASN106 4.9 55.6 0.5

Iron binding site 5 out of 24 in 8cu8

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Iron binding site 5 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:55.8
occ:0.50
 O F:HOH359 2.0 57.8 1.0
OE1 F:GLU58 2.1 55.5 1.0
OE1 F:GLU23 2.1 52.4 1.0
ND1 F:HIS61 2.4 55.1 1.0
CD F:GLU58 2.9 55.5 1.0
OE2 F:GLU58 3.1 55.5 1.0
CD F:GLU23 3.2 52.4 1.0
ND2 F:ASN106 3.2 55.8 0.5
CE1 F:HIS61 3.3 55.1 1.0
CG F:HIS61 3.5 55.1 1.0
OE2 F:GLU23 3.7 52.4 1.0
CB F:HIS61 3.8 55.1 1.0
O F:HOH365 3.9 58.0 1.0
O F:HOH303 4.1 58.0 1.0
CG F:GLU58 4.2 55.5 1.0
OE1 F:GLN137 4.3 57.3 1.0
O F:HOH309 4.3 59.3 1.0
CA F:GLU58 4.4 55.5 1.0
CG F:ASN106 4.4 55.8 0.5
ND2 F:ASN106 4.4 55.8 0.5
CG F:GLU23 4.5 52.4 1.0
NE2 F:HIS61 4.5 55.1 1.0
CB F:GLU58 4.5 55.5 1.0
CD2 F:HIS61 4.6 55.1 1.0
CB F:GLU23 4.8 52.4 1.0
O F:HOH304 4.8 55.9 1.0
OD1 F:ASN106 4.9 55.8 0.5

Iron binding site 6 out of 24 in 8cu8

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Iron binding site 6 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:56.0
occ:0.50
 O G:HOH359 2.0 57.9 1.0
OE1 G:GLU58 2.1 55.6 1.0
OE1 G:GLU23 2.1 52.6 1.0
ND1 G:HIS61 2.4 55.5 1.0
CD G:GLU58 2.9 55.6 1.0
OE2 G:GLU58 3.1 55.6 1.0
CD G:GLU23 3.2 52.6 1.0
ND2 G:ASN106 3.2 55.9 0.5
CE1 G:HIS61 3.3 55.5 1.0
CG G:HIS61 3.5 55.5 1.0
OE2 G:GLU23 3.7 52.6 1.0
CB G:HIS61 3.8 55.5 1.0
O G:HOH365 3.9 57.9 1.0
O G:HOH303 4.1 58.4 1.0
CG G:GLU58 4.2 55.6 1.0
OE1 G:GLN137 4.3 57.4 1.0
O G:HOH311 4.3 60.2 1.0
CA G:GLU58 4.4 55.6 1.0
CG G:ASN106 4.4 55.9 0.5
ND2 G:ASN106 4.4 55.9 0.5
CG G:GLU23 4.5 52.6 1.0
NE2 G:HIS61 4.5 55.5 1.0
CB G:GLU58 4.5 55.6 1.0
CD2 G:HIS61 4.6 55.5 1.0
CB G:GLU23 4.8 52.6 1.0
O G:HOH305 4.8 56.0 1.0
OD1 G:ASN106 4.9 55.9 0.5

Iron binding site 7 out of 24 in 8cu8

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Iron binding site 7 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:55.9
occ:0.50
 O H:HOH360 2.0 58.1 1.0
OE1 H:GLU58 2.1 55.7 1.0
OE1 H:GLU23 2.1 52.5 1.0
ND1 H:HIS61 2.4 55.2 1.0
CD H:GLU58 2.9 55.7 1.0
OE2 H:GLU58 3.1 55.7 1.0
CD H:GLU23 3.2 52.5 1.0
ND2 H:ASN106 3.2 55.9 0.5
CE1 H:HIS61 3.3 55.2 1.0
CG H:HIS61 3.5 55.2 1.0
OE2 H:GLU23 3.7 52.5 1.0
CB H:HIS61 3.8 55.2 1.0
O H:HOH368 3.9 57.6 1.0
O H:HOH304 4.1 58.1 1.0
CG H:GLU58 4.2 55.7 1.0
OE1 H:GLN137 4.3 57.3 1.0
O H:HOH310 4.3 59.5 1.0
CA H:GLU58 4.4 55.7 1.0
CG H:ASN106 4.4 55.9 0.5
ND2 H:ASN106 4.4 55.9 0.5
CG H:GLU23 4.5 52.5 1.0
NE2 H:HIS61 4.5 55.2 1.0
CB H:GLU58 4.5 55.7 1.0
CD2 H:HIS61 4.6 55.2 1.0
CB H:GLU23 4.8 52.5 1.0
O H:HOH307 4.8 55.4 1.0
OD1 H:ASN106 4.9 55.9 0.5

Iron binding site 8 out of 24 in 8cu8

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Iron binding site 8 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:56.4
occ:0.50
 O I:HOH359 2.0 58.2 1.0
OE1 I:GLU58 2.1 55.9 1.0
OE1 I:GLU23 2.1 52.7 1.0
ND1 I:HIS61 2.4 55.9 1.0
CD I:GLU58 2.9 55.9 1.0
OE2 I:GLU58 3.1 55.9 1.0
CD I:GLU23 3.2 52.7 1.0
ND2 I:ASN106 3.2 55.8 0.5
CE1 I:HIS61 3.3 55.9 1.0
CG I:HIS61 3.5 55.9 1.0
OE2 I:GLU23 3.7 52.7 1.0
CB I:HIS61 3.8 55.9 1.0
O I:HOH365 3.9 58.2 1.0
O I:HOH303 4.1 58.1 1.0
CG I:GLU58 4.2 55.9 1.0
OE1 I:GLN137 4.3 57.6 1.0
O I:HOH309 4.3 59.9 1.0
CA I:GLU58 4.4 55.9 1.0
CG I:ASN106 4.4 55.8 0.5
ND2 I:ASN106 4.4 55.8 0.5
CG I:GLU23 4.5 52.7 1.0
NE2 I:HIS61 4.5 55.9 1.0
CB I:GLU58 4.5 55.9 1.0
CD2 I:HIS61 4.6 55.9 1.0
CB I:GLU23 4.8 52.7 1.0
O I:HOH305 4.8 56.0 1.0
OD1 I:ASN106 4.9 55.8 0.5

Iron binding site 9 out of 24 in 8cu8

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Iron binding site 9 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:56.3
occ:0.50
 O J:HOH360 2.0 58.4 1.0
OE1 J:GLU58 2.1 56.0 1.0
OE1 J:GLU23 2.1 52.7 1.0
ND1 J:HIS61 2.4 55.6 1.0
CD J:GLU58 2.9 56.0 1.0
OE2 J:GLU58 3.1 56.0 1.0
CD J:GLU23 3.2 52.7 1.0
ND2 J:ASN106 3.2 56.0 0.5
CE1 J:HIS61 3.3 55.6 1.0
CG J:HIS61 3.5 55.6 1.0
OE2 J:GLU23 3.7 52.7 1.0
CB J:HIS61 3.8 55.6 1.0
O J:HOH368 3.9 57.7 1.0
O J:HOH304 4.1 58.1 1.0
CG J:GLU58 4.2 56.0 1.0
OE1 J:GLN137 4.3 57.5 1.0
O J:HOH311 4.3 59.5 1.0
CA J:GLU58 4.4 56.0 1.0
CG J:ASN106 4.4 56.0 0.5
ND2 J:ASN106 4.4 56.0 0.5
CG J:GLU23 4.5 52.7 1.0
NE2 J:HIS61 4.5 55.6 1.0
CB J:GLU58 4.5 56.0 1.0
CD2 J:HIS61 4.6 55.6 1.0
CB J:GLU23 4.8 52.7 1.0
O J:HOH307 4.8 55.9 1.0
OD1 J:ASN106 4.9 56.0 0.5

Iron binding site 10 out of 24 in 8cu8

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Iron binding site 10 out of 24 in the Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Ferritin 2 From Caenorhabditis Elegans, Ftn-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe201

b:56.3
occ:0.50
 O K:HOH359 2.0 58.4 1.0
OE1 K:GLU58 2.1 56.0 1.0
OE1 K:GLU23 2.1 52.7 1.0
ND1 K:HIS61 2.4 55.7 1.0
CD K:GLU58 2.9 56.0 1.0
OE2 K:GLU58 3.1 56.0 1.0
CD K:GLU23 3.2 52.7 1.0
ND2 K:ASN106 3.2 55.6 0.5
CE1 K:HIS61 3.3 55.7 1.0
CG K:HIS61 3.5 55.7 1.0
OE2 K:GLU23 3.7 52.7 1.0
CB K:HIS61 3.8 55.7 1.0
O K:HOH365 3.9 57.7 1.0
O K:HOH303 4.1 57.8 1.0
CG K:GLU58 4.2 56.0 1.0
OE1 K:GLN137 4.3 57.3 1.0
O K:HOH309 4.3 59.4 1.0
CA K:GLU58 4.4 56.0 1.0
CG K:ASN106 4.4 55.6 0.5
ND2 K:ASN106 4.4 55.6 0.5
CG K:GLU23 4.5 52.7 1.0
NE2 K:HIS61 4.5 55.7 1.0
CB K:GLU58 4.5 56.0 1.0
CD2 K:HIS61 4.6 55.7 1.0
CB K:GLU23 4.8 52.7 1.0
O K:HOH306 4.8 55.8 1.0
OD1 K:ASN106 4.9 55.6 0.5

Reference:

S.M.M.Mubarak, T.R.Malcolm, H.G.Brown, E.Hanssen, M.J.Maher, G.Mccoll, G.N.L.Jameson. Biochemical Characterization of Caenorhabditis Elegans Ferritins To Be Published.
Page generated: Thu Jul 27 16:35:23 2023

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