Iron in PDB 8d8p: Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium

The structure of Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium, PDB code: 8d8p was solved by P.S.Vieira, M.T.Murakami, L.M.Zanphorlin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.41 / 2.75
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	57.545, 203.38, 316.351, 90, 90, 90
R / Rfree (%)	22.8 / 26.9

The binding sites of Iron atom in the Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium (pdb code 8d8p). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium, PDB code: 8d8p:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:68.0 occ:1.00 FE A:HEM501 0.0 68.0 1.0 NA A:HEM501 2.0 68.7 1.0 NB A:HEM501 2.0 67.0 1.0 ND A:HEM501 2.0 70.3 1.0 NC A:HEM501 2.0 69.1 1.0 SG A:CYS378 2.3 73.9 1.0 C1A A:HEM501 3.1 67.7 1.0 C4D A:HEM501 3.1 69.6 1.0 C1B A:HEM501 3.1 65.8 1.0 C4A A:HEM501 3.1 66.9 1.0 C4B A:HEM501 3.1 67.9 1.0 C4C A:HEM501 3.1 68.3 1.0 C1C A:HEM501 3.1 69.0 1.0 C1D A:HEM501 3.1 68.2 1.0 CHA A:HEM501 3.4 67.8 1.0 CHB A:HEM501 3.4 65.0 1.0 CHD A:HEM501 3.4 67.5 1.0 CHC A:HEM501 3.4 68.0 1.0 CB A:CYS378 3.6 67.3 1.0 C2A A:HEM501 4.3 68.2 1.0 C3D A:HEM501 4.3 68.6 1.0 C3A A:HEM501 4.3 67.5 1.0 C3B A:HEM501 4.3 67.9 1.0 C2B A:HEM501 4.3 66.8 1.0 C3C A:HEM501 4.3 67.6 1.0 C2D A:HEM501 4.3 68.6 1.0 C2C A:HEM501 4.3 67.8 1.0 O2 A:PLM502 4.4 72.1 1.0 C2 A:PLM502 4.4 66.0 1.0 CB A:PRO247 4.4 69.0 1.0 CA A:CYS378 4.5 69.2 1.0 OE1 A:GLN367 4.7 68.3 1.0 C1 A:PLM502 4.8 69.0 1.0 CG A:PRO247 4.9 69.0 1.0

Iron binding site 2 out of 2 in the Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:78.8 occ:1.00 FE B:HEM501 0.0 78.8 1.0 NA B:HEM501 2.0 71.7 1.0 NB B:HEM501 2.0 72.5 1.0 NC B:HEM501 2.0 73.3 1.0 ND B:HEM501 2.1 74.4 1.0 SG B:CYS378 2.3 75.4 1.0 C1A B:HEM501 3.0 72.9 1.0 C4A B:HEM501 3.1 71.5 1.0 C1B B:HEM501 3.1 72.0 1.0 C4C B:HEM501 3.1 71.7 1.0 C1C B:HEM501 3.1 73.6 1.0 C1D B:HEM501 3.1 73.8 1.0 C4B B:HEM501 3.1 71.7 1.0 C4D B:HEM501 3.1 72.2 1.0 CB B:CYS378 3.2 74.2 1.0 CHB B:HEM501 3.4 71.5 1.0 CHD B:HEM501 3.4 74.3 1.0 CHA B:HEM501 3.4 71.8 1.0 CHC B:HEM501 3.4 72.7 1.0 CA B:CYS378 4.2 74.4 1.0 C2A B:HEM501 4.3 73.8 1.0 C3A B:HEM501 4.3 72.8 1.0 C2C B:HEM501 4.3 73.2 1.0 C3C B:HEM501 4.3 70.2 1.0 C2B B:HEM501 4.3 71.5 1.0 C3B B:HEM501 4.3 71.5 1.0 C2D B:HEM501 4.3 73.4 1.0 C3D B:HEM501 4.3 71.8 1.0 CB B:PRO247 4.4 70.3 1.0 OE1 B:GLN367 4.4 75.7 1.0 C2 B:PLM502 4.6 68.6 1.0 O B:PRO379 4.8 85.1 1.0 CG B:PRO247 5.0 71.9 1.0

P.S.Vieira, M.T.Murakami, L.M.Zanphorlin. Crystal Structure of A Novel Fatty Acid Decarboxylase From Rothia Nasimurium Proc.Natl.Acad.Sci.Usa 2023.
ISSN: ESSN 1091-6490